Homology
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match:
A0A6H5KHA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHA4_9PHAE)
HSP 1 Score: 322 bits (826), Expect = 1.520e-108
Identity = 163/232 (70.26%), Postives = 188/232 (81.03%), Query Frame = 1
Query: 1 RCSATPVRLTADSPLRFVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYYAELRDPSSGTVLAKHELVSLAQHPSRDVAALGFKDEDDALG------DIRSRGLPFRALTLRQRLLGEKDSLKIVGYEVRERSGAEA-GEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRATM 675
RCSATPVR T SPLRF+AA HAV+PW+FPGY S AWLKF+DET+VRYYAELRDP +G VLA+HEL+SLA+HPSRD+AALG K DD G D+ S+G+PF L LR+RL+ +SL+IVGYEVRE+ G GEDP M+M+RAKG+LAARTA QAFV T HATLNPGMCG AVLD++ ELCGCVEGVVPTAPPEA V+ VRALQGMPCVVEWKDLD+LL ATM
Sbjct: 23 RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPFTGAVLAQHELISLARHPSRDMAALGLKGGDDGDGESRFLRDVGSKGIPFSPLPLRRRLIEPSESLRIVGYEVREQPGGLGQGEDPGMMMVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAA-VEAHVRALQGMPCVVEWKDLDTLLTATM 253
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match:
D7G6F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F8_ECTSI)
HSP 1 Score: 175 bits (444), Expect = 2.360e-52
Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 313 TLRQRLLGEKDSLKIVGYEVRERSGAEA-GEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRATM 675
+LR+RL+ +SL+IVGYEVRE+ G GEDP M+++RAKG+LAARTA QAFV T HATLNPGMCG AVLD++ ELCGCVEGVVPTAPPEAE V+ VRALQGMPCVVEWKDLD+LL ATM
Sbjct: 24 SLRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAE-VEAHVRALQGMPCVVEWKDLDTLLTATM 144
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match:
A0A7S2CK26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK26_9STRA)
HSP 1 Score: 82.0 bits (201), Expect = 2.230e-15
Identity = 57/208 (27.40%), Postives = 102/208 (49.04%), Query Frame = 1
Query: 49 FVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYYAELRDPSSGTVLAKHEL-VSLAQHPSRDVAALGFKDEDDALGDIRSRGLPFRALTLRQRLLGEKDSLKIVGYEVRERSGAEAGEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRA 669
F+ + H V PW + Y+ W++ ++ ++ +Y E+RD +G V H L + H + D+A L + D ++ + P L L R L E ++++G+E+ + G + + + G + RT+ ++F++T L GMCGG VLD +L+ G +EG+VP + + + L G VE +L S LR+
Sbjct: 38 FLTSSHVVAPWKWRNYYPQD--WIEHVNASNTKYSIEIRDRETGRVRLSHSLELPAVCHETLDIAMLEHQPWSD---EVMAHMEP---LQLASRQLEEGQDVRVMGHEIVDEPGDDIDDVREQLPRDVPGRMLRRTSGRSFIKTA-TVLGDGMCGGPVLDPDLQCHGVIEGIVPPS-------NLALGDLAGAAAFVEATELTSWLRS 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.52e-108 / Id = 70.26 Expect = 2.36e-52 / Id = 73.77 Expect = 2.23e-15 / Id = 27.40 Sequence A0A6H5KHA4_9PHAE D7G6F8_ECTSI A0A7S2CK26_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 327.4 Seed ortholog evalue 5.2e-87 Seed eggNOG ortholog 2880.D8LC89 EggNOG OGs 2C4U2@1,2S2WK@2759 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Hectar predicted targeting category other localisation Exons 2 Model size 675 Cds size 675 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929546.7183194-CDS-H-elongata_contig100445:176..683 1622929546.7183194-CDS-H-elongata_contig100445:176..683 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100445 177..683 - 1691679063.5867605-CDS-H-elongata_contig100445:176..683 1691679063.5867605-CDS-H-elongata_contig100445:176..683 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100445 177..683 - 1622929546.7306898-CDS-H-elongata_contig100445:1201..1369 1622929546.7306898-CDS-H-elongata_contig100445:1201..1369 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100445 1202..1369 - 1691679063.6063874-CDS-H-elongata_contig100445:1201..1369 1691679063.6063874-CDS-H-elongata_contig100445:1201..1369 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100445 1202..1369 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100445.45.1
>prot_H-elongata_contig100445.45.1 ID=prot_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
RCSATPVRLTADSPLRFVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRY back to top mRNA from alignment at H-elongata_contig100445:177..1369-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100445.45.1 ID=mRNA_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-elongata_contig100445:177..1369- (Himanthalia elongata Himel1 dioecious)AGGTGCAGCGCGACGCCCGTGAGGCTTACCGCCGACTCGCCGCTGCGTTT
CGTCGCCGCGGGGCACGCAGTGATCCCTTGGTCCTTCCCTGGATACTTCG
GGAATTCTAAGGCCTGGCTCAAGTTCTTGGACGAAACACATGTTCGGTAC
TACGCCGAGCTGAGAGAC GTGAGGTTCTAGGATCCTAACGCATCGCGGCA
TCTCCCGTGCCATCCCATGCGGGCATGTTATTTCTTCCCTCCTGGATGAG
GTCGTCATGTCCCAGGGATTTTCTACCCCGTCCGGGGTGCGACCACACTT
GCGCATATTAAATTTCCAAATTTTGGCTCTCTCTGTACGAGTCCTTGCCA
CTACTTACGGGTAGCCTACTATGTAATTTGTTTGTGGCCGTGGGGGTTCT
TTTTAGTTCAAAAGTAGGGCTCACCCTCGAAATGTGCCCCCCCCCCACCT
CCGTAAATTCACGTTTTATTCTAATCCTTGTCTAGCCGCGATCAGCTCCT
TCGGGTGTTTTTTAACTTGATGTGTGTGTGTGTTTTTTTTTCGTCTCGAA
GCGGGTTGTAAAAATTCTGCCTCGAACCAGACGACCATTTCCCCTATCAA
AACTATCCCTTCCCTTCACCTCCTCAACGTTTCCATCACCATTCGCCCAA
TTGACTTTCCGCTCCTTGCTCATCTTGACACGATAGCCGTCTTCGGGGAC
GGTACTCGCCAAGCATGAGCTTGTCAGTCTTGCGCAACACCCCTCGCGCG
ACGTTGCCGCCCTGGGTTTTAAGGACGAGGACGACGCTCTCGGCGACATT
CGCTCGCGGGGGCTTCCTTTTAGGGCCCTCACTCTGCGGCAGCGACTGCT
CGGGGAGAAAGACTCCCTAAAGATTGTTGGGTACGAGGTCAGGGAGCGGT
CGGGAGCTGAGGCTGGGGAAGACCCGAACATGGTCATGATTCGGGCAAAG
GGGGAGCTCGCAGCGCGCACGGCGAAGCAAGCCTTCGTGCGCACTAACCA
CGCGACGCTCAACCCAGGAATGTGCGGCGGCGCGGTTCTGGACGCGAATC
TGGAGCTGTGTGGCTGCGTAGAGGGCGTGGTGCCCACCGCGCCGCCCGAG
GCGGAGGAAGTGGACCCGCAAGTCAGGGCGCTGCAAGGGATGCCGTGCGT
TGTCGAATGGAAAGATTTGGACTCTCTGCTGAGAGCTACGATG back to top Coding sequence (CDS) from alignment at H-elongata_contig100445:177..1369-
>mRNA_H-elongata_contig100445.45.1 ID=mRNA_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig100445:177..1369- (Himanthalia elongata Himel1 dioecious) back to top