mRNA_H-elongata_contig100445.45.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100445.45.1
Unique NamemRNA_H-elongata_contig100445.45.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match: A0A6H5KHA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHA4_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 1.520e-108
Identity = 163/232 (70.26%), Postives = 188/232 (81.03%), Query Frame = 1 
Query:    1 RCSATPVRLTADSPLRFVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYYAELRDPSSGTVLAKHELVSLAQHPSRDVAALGFKDEDDALG------DIRSRGLPFRALTLRQRLLGEKDSLKIVGYEVRERSGAEA-GEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRATM 675
            RCSATPVR T  SPLRF+AA HAV+PW+FPGY   S AWLKF+DET+VRYYAELRDP +G VLA+HEL+SLA+HPSRD+AALG K  DD  G      D+ S+G+PF  L LR+RL+   +SL+IVGYEVRE+ G    GEDP M+M+RAKG+LAARTA QAFV T HATLNPGMCG AVLD++ ELCGCVEGVVPTAPPEA  V+  VRALQGMPCVVEWKDLD+LL ATM
Sbjct:   23 RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPFTGAVLAQHELISLARHPSRDMAALGLKGGDDGDGESRFLRDVGSKGIPFSPLPLRRRLIEPSESLRIVGYEVREQPGGLGQGEDPGMMMVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAA-VEAHVRALQGMPCVVEWKDLDTLLTATM 253
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BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match: D7G6F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F8_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.360e-52
Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:  313 TLRQRLLGEKDSLKIVGYEVRERSGAEA-GEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRATM 675
            +LR+RL+   +SL+IVGYEVRE+ G    GEDP M+++RAKG+LAARTA QAFV T HATLNPGMCG AVLD++ ELCGCVEGVVPTAPPEAE V+  VRALQGMPCVVEWKDLD+LL ATM
Sbjct:   24 SLRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAE-VEAHVRALQGMPCVVEWKDLDTLLTATM 144
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BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match: A0A7S2CK26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK26_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.230e-15
Identity = 57/208 (27.40%), Postives = 102/208 (49.04%), Query Frame = 1 
Query:   49 FVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYYAELRDPSSGTVLAKHEL-VSLAQHPSRDVAALGFKDEDDALGDIRSRGLPFRALTLRQRLLGEKDSLKIVGYEVRERSGAEAGEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRA 669
            F+ + H V PW +  Y+     W++ ++ ++ +Y  E+RD  +G V   H L +    H + D+A L  +   D   ++ +   P   L L  R L E   ++++G+E+ +  G +  +    +     G +  RT+ ++F++T    L  GMCGG VLD +L+  G +EG+VP +       +  +  L G    VE  +L S LR+
Sbjct:   38 FLTSSHVVAPWKWRNYYPQD--WIEHVNASNTKYSIEIRDRETGRVRLSHSLELPAVCHETLDIAMLEHQPWSD---EVMAHMEP---LQLASRQLEEGQDVRVMGHEIVDEPGDDIDDVREQLPRDVPGRMLRRTSGRSFIKTA-TVLGDGMCGGPVLDPDLQCHGVIEGIVPPS-------NLALGDLAGAAAFVEATELTSWLRS 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHA4_9PHAE1.520e-10870.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G6F8_ECTSI2.360e-5273.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CK26_9STRA2.230e-1527.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100445contigH-elongata_contig100445:177..1369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue5.2e-87
Seed eggNOG ortholog2880.D8LC89
EggNOG OGs2C4U2@1,2S2WK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size675
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.7183194-CDS-H-elongata_contig100445:176..6831622929546.7183194-CDS-H-elongata_contig100445:176..683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100445 177..683 -
1691679063.5867605-CDS-H-elongata_contig100445:176..6831691679063.5867605-CDS-H-elongata_contig100445:176..683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100445 177..683 -
1622929546.7306898-CDS-H-elongata_contig100445:1201..13691622929546.7306898-CDS-H-elongata_contig100445:1201..1369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100445 1202..1369 -
1691679063.6063874-CDS-H-elongata_contig100445:1201..13691691679063.6063874-CDS-H-elongata_contig100445:1201..1369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100445 1202..1369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100445.45.1prot_H-elongata_contig100445.45.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100445 177..1369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100445.45.1

>prot_H-elongata_contig100445.45.1 ID=prot_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
RCSATPVRLTADSPLRFVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRY
YAELRDPSSGTVLAKHELVSLAQHPSRDVAALGFKDEDDALGDIRSRGLP
FRALTLRQRLLGEKDSLKIVGYEVRERSGAEAGEDPNMVMIRAKGELAAR
TAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDP
QVRALQGMPCVVEWKDLDSLLRATM
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mRNA from alignment at H-elongata_contig100445:177..1369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100445.45.1 ID=mRNA_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-elongata_contig100445:177..1369- (Himanthalia elongata Himel1 dioecious)
AGGTGCAGCGCGACGCCCGTGAGGCTTACCGCCGACTCGCCGCTGCGTTT
CGTCGCCGCGGGGCACGCAGTGATCCCTTGGTCCTTCCCTGGATACTTCG
GGAATTCTAAGGCCTGGCTCAAGTTCTTGGACGAAACACATGTTCGGTAC
TACGCCGAGCTGAGAGACGTGAGGTTCTAGGATCCTAACGCATCGCGGCA
TCTCCCGTGCCATCCCATGCGGGCATGTTATTTCTTCCCTCCTGGATGAG
GTCGTCATGTCCCAGGGATTTTCTACCCCGTCCGGGGTGCGACCACACTT
GCGCATATTAAATTTCCAAATTTTGGCTCTCTCTGTACGAGTCCTTGCCA
CTACTTACGGGTAGCCTACTATGTAATTTGTTTGTGGCCGTGGGGGTTCT
TTTTAGTTCAAAAGTAGGGCTCACCCTCGAAATGTGCCCCCCCCCCACCT
CCGTAAATTCACGTTTTATTCTAATCCTTGTCTAGCCGCGATCAGCTCCT
TCGGGTGTTTTTTAACTTGATGTGTGTGTGTGTTTTTTTTTCGTCTCGAA
GCGGGTTGTAAAAATTCTGCCTCGAACCAGACGACCATTTCCCCTATCAA
AACTATCCCTTCCCTTCACCTCCTCAACGTTTCCATCACCATTCGCCCAA
TTGACTTTCCGCTCCTTGCTCATCTTGACACGATAGCCGTCTTCGGGGAC
GGTACTCGCCAAGCATGAGCTTGTCAGTCTTGCGCAACACCCCTCGCGCG
ACGTTGCCGCCCTGGGTTTTAAGGACGAGGACGACGCTCTCGGCGACATT
CGCTCGCGGGGGCTTCCTTTTAGGGCCCTCACTCTGCGGCAGCGACTGCT
CGGGGAGAAAGACTCCCTAAAGATTGTTGGGTACGAGGTCAGGGAGCGGT
CGGGAGCTGAGGCTGGGGAAGACCCGAACATGGTCATGATTCGGGCAAAG
GGGGAGCTCGCAGCGCGCACGGCGAAGCAAGCCTTCGTGCGCACTAACCA
CGCGACGCTCAACCCAGGAATGTGCGGCGGCGCGGTTCTGGACGCGAATC
TGGAGCTGTGTGGCTGCGTAGAGGGCGTGGTGCCCACCGCGCCGCCCGAG
GCGGAGGAAGTGGACCCGCAAGTCAGGGCGCTGCAAGGGATGCCGTGCGT
TGTCGAATGGAAAGATTTGGACTCTCTGCTGAGAGCTACGATG
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Coding sequence (CDS) from alignment at H-elongata_contig100445:177..1369-

>mRNA_H-elongata_contig100445.45.1 ID=mRNA_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig100445:177..1369- (Himanthalia elongata Himel1 dioecious)
AGGTGCAGCGCGACGCCCGTGAGGCTTACCGCCGACTCGCCGCTGCGTTT
CGTCGCCGCGGGGCACGCAGTGATCCCTTGGTCCTTCCCTGGATACTTCG
GGAATTCTAAGGCCTGGCTCAAGTTCTTGGACGAAACACATGTTCGGTAC
TACGCCGAGCTGAGAGACAGGTGCAGCGCGACGCCCGTGAGGCTTACCGC
CGACTCGCCGCTGCGTTTCGTCGCCGCGGGGCACGCAGTGATCCCTTGGT
CCTTCCCTGGATACTTCGGGAATTCTAAGGCCTGGCTCAAGTTCTTGGAC
GAAACACATGTTCGGTACTACGCCGAGCTGAGAGACCCGTCTTCGGGGAC
GGTACTCGCCAAGCATGAGCTTGTCAGTCTTGCGCAACACCCCTCGCGCG
ACGTTGCCGCCCTGGGTTTTAAGGACGAGGACGACGCTCTCGGCGACATT
CGCTCGCGGGGGCTTCCTTTTAGGGCCCTCACTCTGCGGCAGCGACTGCT
CGGGGAGAAAGACTCCCTAAAGATTGTTGGGTACGAGGTCAGGGAGCGGT
CGGGAGCTGAGGCTGGGGAAGACCCGAACATGGTCATGATTCGGGCAAAG
GGGGAGCTCGCAGCGCGCACGGCGAAGCAAGCCTTCGTGCGCACTAACCA
CGCGACGCTCAACCCAGGAATGTGCGGCGGCGCGGTTCTGGACGCGAATC
TGGAGCTGTGTGGCTGCGTAGAGGGCGTGGTGCCCACCGCGCCGCCCGAG
GCGGAGGAAGTGGACCCGCAAGTCAGGGCGCTGCAAGGGATGCCGTGCGT
TGTCGAATGGAAAGATTTGGACTCTCTGCTGAGAGCTACGATGCCGTCTT
CGGGGACGGTACTCGCCAAGCATGAGCTTGTCAGTCTTGCGCAACACCCC
TCGCGCGACGTTGCCGCCCTGGGTTTTAAGGACGAGGACGACGCTCTCGG
CGACATTCGCTCGCGGGGGCTTCCTTTTAGGGCCCTCACTCTGCGGCAGC
GACTGCTCGGGGAGAAAGACTCCCTAAAGATTGTTGGGTACGAGGTCAGG
GAGCGGTCGGGAGCTGAGGCTGGGGAAGACCCGAACATGGTCATGATTCG
GGCAAAGGGGGAGCTCGCAGCGCGCACGGCGAAGCAAGCCTTCGTGCGCA
CTAACCACGCGACGCTCAACCCAGGAATGTGCGGCGGCGCGGTTCTGGAC
GCGAATCTGGAGCTGTGTGGCTGCGTAGAGGGCGTGGTGCCCACCGCGCC
GCCCGAGGCGGAGGAAGTGGACCCGCAAGTCAGGGCGCTGCAAGGGATGC
CGTGCGTTGTCGAATGGAAAGATTTGGACTCTCTGCTGAGAGCTACGATG
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