mRNA_H-elongata_contig100445.45.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match: A0A6H5KHA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHA4_9PHAE) HSP 1 Score: 322 bits (826), Expect = 1.520e-108 Identity = 163/232 (70.26%), Postives = 188/232 (81.03%), Query Frame = 1 Query: 1 RCSATPVRLTADSPLRFVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYYAELRDPSSGTVLAKHELVSLAQHPSRDVAALGFKDEDDALG------DIRSRGLPFRALTLRQRLLGEKDSLKIVGYEVRERSGAEA-GEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRATM 675
RCSATPVR T SPLRF+AA HAV+PW+FPGY S AWLKF+DET+VRYYAELRDP +G VLA+HEL+SLA+HPSRD+AALG K DD G D+ S+G+PF L LR+RL+ +SL+IVGYEVRE+ G GEDP M+M+RAKG+LAARTA QAFV T HATLNPGMCG AVLD++ ELCGCVEGVVPTAPPEA V+ VRALQGMPCVVEWKDLD+LL ATM
Sbjct: 23 RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPFTGAVLAQHELISLARHPSRDMAALGLKGGDDGDGESRFLRDVGSKGIPFSPLPLRRRLIEPSESLRIVGYEVREQPGGLGQGEDPGMMMVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAA-VEAHVRALQGMPCVVEWKDLDTLLTATM 253
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match: D7G6F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F8_ECTSI) HSP 1 Score: 175 bits (444), Expect = 2.360e-52 Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 1 Query: 313 TLRQRLLGEKDSLKIVGYEVRERSGAEA-GEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRATM 675
+LR+RL+ +SL+IVGYEVRE+ G GEDP M+++RAKG+LAARTA QAFV T HATLNPGMCG AVLD++ ELCGCVEGVVPTAPPEAE V+ VRALQGMPCVVEWKDLD+LL ATM
Sbjct: 24 SLRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAE-VEAHVRALQGMPCVVEWKDLDTLLTATM 144
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Match: A0A7S2CK26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK26_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.230e-15 Identity = 57/208 (27.40%), Postives = 102/208 (49.04%), Query Frame = 1 Query: 49 FVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYYAELRDPSSGTVLAKHEL-VSLAQHPSRDVAALGFKDEDDALGDIRSRGLPFRALTLRQRLLGEKDSLKIVGYEVRERSGAEAGEDPNMVMIRAKGELAARTAKQAFVRTNHATLNPGMCGGAVLDANLELCGCVEGVVPTAPPEAEEVDPQVRALQGMPCVVEWKDLDSLLRA 669
F+ + H V PW + Y+ W++ ++ ++ +Y E+RD +G V H L + H + D+A L + D ++ + P L L R L E ++++G+E+ + G + + + G + RT+ ++F++T L GMCGG VLD +L+ G +EG+VP + + + L G VE +L S LR+
Sbjct: 38 FLTSSHVVAPWKWRNYYPQD--WIEHVNASNTKYSIEIRDRETGRVRLSHSLELPAVCHETLDIAMLEHQPWSD---EVMAHMEP---LQLASRQLEEGQDVRVMGHEIVDEPGDDIDDVREQLPRDVPGRMLRRTSGRSFIKTA-TVLGDGMCGGPVLDPDLQCHGVIEGIVPPS-------NLALGDLAGAAAFVEATELTSWLRS 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100445.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100445.45.1 >prot_H-elongata_contig100445.45.1 ID=prot_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp RCSATPVRLTADSPLRFVAAGHAVIPWSFPGYFGNSKAWLKFLDETHVRYback to top mRNA from alignment at H-elongata_contig100445:177..1369- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100445.45.1 ID=mRNA_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-elongata_contig100445:177..1369- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100445:177..1369- >mRNA_H-elongata_contig100445.45.1 ID=mRNA_H-elongata_contig100445.45.1|Name=mRNA_H-elongata_contig100445.45.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig100445:177..1369- (Himanthalia elongata Himel1 dioecious)back to top |