mRNA_H-elongata_contig100343.36.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY) HSP 1 Score: 157 bits (398), Expect = 1.140e-40 Identity = 84/208 (40.38%), Postives = 126/208 (60.58%), Query Frame = 1 Query: 10 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVE 633 K ++K K G DG++EKYK RLVA+GF QV G+ + E ++P AS R LLA A + E+ D + AFL D+DEE+YMK+P + + V +LNKA+YGL QAGR W + A+GF + +D VF K DG +++ ++ D++ + + + +L +FEM D+G+AR+ +G ITR+R R L++ QH YVE Sbjct: 973 KWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVE 1179
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 157 bits (397), Expect = 1.540e-40 Identity = 82/222 (36.94%), Postives = 131/222 (59.01%), Query Frame = 1 Query: 1 LAQKILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDEL-FTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVKE 663 + K ++K K G DG+VEKYK RLVAQGF QV G+ Y E ++P + S R+LLA A + E+ D + AFL +++EE+YMK+P ++ + AV RL KA+YGL QA R W ++ +GF + + D CVF K +D ++ V D + + + D T + +LG +F+M D+G+ + + +TRNR+ R +++ Q Y+E ++E + E Sbjct: 1039 IGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTK--SDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAE 1258
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.920e-40 Identity = 77/211 (36.49%), Postives = 128/211 (60.66%), Query Frame = 1 Query: 28 KVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVK 660 K +GK+ K+K RLVA+GF ++ V Y SP P++AS +++LA A K L H+D +QA+ A +DEE+++++P + S +G+ +AIYGL Q+GR W + + GFEQ K DPCVFRK+VD +++V++ D++ D+ + L +KF ++G+ ++ C I R+ +A LKI Q Y+++MV+ F+V+ Sbjct: 216 KTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQ 425
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 146 bits (368), Expect = 4.170e-40 Identity = 75/211 (35.55%), Postives = 126/211 (59.72%), Query Frame = 1 Query: 10 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 642 K ++++K K+G+V KYK RLVAQG+ Q+ G+ + E ++P S R +LA AV N E+ D + A+L D+ EE+YM+ PE + + S V RL+K +YGL Q+G WN +T +G++Q + DPCV+ + G+ ++ + V D+L M+ +L FE+ D+G+ + +G I R+R+A +++I Q Y+ES++ Sbjct: 19 KWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIIGFEIERDREAGKIQILQQHYIESIL 228
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY) HSP 1 Score: 155 bits (393), Expect = 5.100e-40 Identity = 82/208 (39.42%), Postives = 126/208 (60.58%), Query Frame = 1 Query: 10 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVE 633 K ++K K G DG++EKYK RLVA+GF QV G+ + E ++P AS R LLA A + E+ D + AFL D+DEE+YMK+P ++ + + +LNKA+YGL QAGR W + A+GF + +D VF K DG +++ ++ D++ + + + +L +FEM D+G+AR+ +G I R+R R L++ QH YVE Sbjct: 650 KWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVE 856
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 155 bits (392), Expect = 7.070e-40 Identity = 81/220 (36.82%), Postives = 132/220 (60.00%), Query Frame = 1 Query: 1 LAQKILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVK 660 ++ K + K K+GK++K+K R+VA+GF Q+ V Y SP P++AS ++LA A K L H+D +QA A +DEE++ ++P + S + + +AIYGL Q+GR W + + GFEQ K DPCVFRK+VD +++V++ D++ D+ + L +KF ++G+ +++ GC I R+ +A L+I Q Y++SMVE F+VK Sbjct: 891 VSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1109
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 155 bits (391), Expect = 9.850e-40 Identity = 81/212 (38.21%), Postives = 125/212 (58.96%), Query Frame = 1 Query: 10 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE 645 K ++K K G DG +EKYK RLVA+GF QV G+ YT+ ++P AS R +LA A + ++ D + AFL D+DEE+YM P + + +V RL K++YGL QA R W ++ +GFE+ D +F KV +G +++ ++ D++ D+ T+D F L ++FEM D+G AR+ +G I R+R L I Q Y+E ++E Sbjct: 1036 KWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENG-VILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILE 1246
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 154 bits (388), Expect = 2.190e-39 Identity = 85/215 (39.53%), Postives = 128/215 (59.53%), Query Frame = 1 Query: 16 LYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTA-VGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNV 657 +Y+ K DG++ +YK RLVAQGF Q G+ Y E ++P T S R+LLA A +N EL FD A+L AD+DEE+YM+ P Y+E S + RL KA+YGL QAG WN+ +TA +GF++ +DPCV+ K +V +H D++ A MD L + +++ D+G R +G I+R+RK R L I Q Y++++++ F + Sbjct: 64 VYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKK-SPKGLTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKM 277
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.180e-38 Identity = 80/211 (37.91%), Postives = 122/211 (57.82%), Query Frame = 1 Query: 28 KVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVK 660 K KDGK+EK+K RLVA+GF Q+ V Y SP P++AS +++LA A K+ +L H+D +QAF A +DE++++++P E S V + +AIYGL Q+GR W + + GFEQ K DPCVFRK+ D D + D + A L + F D+G+ ++ GC + R+ +A L+I Q Y++S+V F+V+ Sbjct: 54 KTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLA-SLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQ 263
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A4Y2KUR8_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KUR8_ARAVE) HSP 1 Score: 148 bits (373), Expect = 2.630e-38 Identity = 81/217 (37.33%), Postives = 127/217 (58.53%), Query Frame = 1 Query: 19 YKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRA--VGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVKE 663 +K K G +E+YK RLVAQGF Q G Y E ++P + R LA A KN + H D + AFL ++++E+YM PE Y E + V +LNKAIYGL QA R W+ + GFEQ K DPC+F+ +G+ + ++V+ D+L KD+ + +F EL +++E+ ++G+ YY+G +I R ++ ++Q +E ++E FN+KE Sbjct: 45 FKAKYDSKGNIERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLFKFANNGNP-MYIIVYVDDLLIAGKDE-DIRKFIKELEEEYELKNLGEVNYYLGINIERTKEGN-FALNQKNKIEEIIEKFNLKE 258 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100343.36.1 >prot_H-elongata_contig100343.36.1 ID=prot_H-elongata_contig100343.36.1|Name=mRNA_H-elongata_contig100343.36.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp LAQKILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTback to top mRNA from alignment at H-elongata_contig100343:197..859+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100343.36.1 ID=mRNA_H-elongata_contig100343.36.1|Name=mRNA_H-elongata_contig100343.36.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig100343:197..859+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100343:197..859+ >mRNA_H-elongata_contig100343.36.1 ID=mRNA_H-elongata_contig100343.36.1|Name=mRNA_H-elongata_contig100343.36.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig100343:197..859+ (Himanthalia elongata Himel1 dioecious)back to top |