prot_H-elongata_contig100343.36.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100343.36.1
Unique Nameprot_H-elongata_contig100343.36.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length221
Homology
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 160 bits (404), Expect = 1.780e-41
Identity = 85/214 (39.72%), Postives = 133/214 (62.15%), Query Frame = 0
Query:    4 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVF-RKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVET 216
            K +++ K G DGK++KYK RLVA+GF QV GV YT+ ++P    AS R+LLA A   + E+   D + AFL  D++EE++M+ P  +Q+    V RL K++YGL QA R W         ++G+ +   D  VF ++  DGD  V V V+ D++   AKD+A +D   +ELG  +EM+D+G+AR+ +G  I  +R  + + + QH YVE++++T
Sbjct: 1011 KWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQDKAHVWRLQKSLYGLKQASREWYKKVRALFESLGYSRSNADHSVFYKRGKDGDLTV-VAVYVDDMLIFAKDRAAVDHIKLELGVPYEMSDLGEARWILGMEIIHDRARKTITLSQHQYVENILKT 1223          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 157 bits (398), Expect = 1.140e-40
Identity = 84/208 (40.38%), Postives = 126/208 (60.58%), Query Frame = 0
Query:    4 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVE 211
            K ++K K G DG++EKYK RLVA+GF QV G+ + E ++P    AS R LLA A   + E+   D + AFL  D+DEE+YMK+P  +   +  V +LNKA+YGL QAGR W      +  A+GF +  +D  VF K  DG   +++ ++ D++   + +   +     +L  +FEM D+G+AR+ +G  ITR+R  R L++ QH YVE
Sbjct:  973 KWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVE 1179          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 157 bits (397), Expect = 1.540e-40
Identity = 82/222 (36.94%), Postives = 131/222 (59.01%), Query Frame = 0
Query:    1 LAQKILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDEL-FTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVKE 221
            +  K ++K K G DG+VEKYK RLVAQGF QV G+ Y E ++P   + S R+LLA A   + E+   D + AFL  +++EE+YMK+P  ++  + AV RL KA+YGL QA R W      ++  +GF + + D CVF K +D    ++ V   D +  + + D  T  +   +LG +F+M D+G+  + +   +TRNR+ R +++ Q  Y+E ++E   + E
Sbjct: 1039 IGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTK--SDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAE 1258          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.920e-40
Identity = 77/211 (36.49%), Postives = 128/211 (60.66%), Query Frame = 0
Query:   10 KVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVK 220
            K   +GK+ K+K RLVA+GF ++  V Y    SP P++AS +++LA A  K   L H+D +QA+  A +DEE+++++P    + S  +G+  +AIYGL Q+GR W     + +   GFEQ K DPCVFRK+VD    +++V++ D++     D+   +     L +KF   ++G+  ++  C I R+ +A  LKI Q  Y+++MV+ F+V+
Sbjct:  216 KTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQ 425          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 146 bits (368), Expect = 4.170e-40
Identity = 75/211 (35.55%), Postives = 126/211 (59.72%), Query Frame = 0
Query:    4 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 214
            K ++++K  K+G+V KYK RLVAQG+ Q+ G+ + E ++P     S R +LA AV  N E+   D + A+L  D+ EE+YM+ PE + + S  V RL+K +YGL Q+G  WN      +T +G++Q + DPCV+ +   G+ ++ + V  D+L         M+    +L   FE+ D+G+ +  +G  I R+R+A +++I Q  Y+ES++
Sbjct:   19 KWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIIGFEIERDREAGKIQILQQHYIESIL 228          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 155 bits (393), Expect = 5.100e-40
Identity = 82/208 (39.42%), Postives = 126/208 (60.58%), Query Frame = 0
Query:    4 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVE 211
            K ++K K G DG++EKYK RLVA+GF QV G+ + E ++P    AS R LLA A   + E+   D + AFL  D+DEE+YMK+P  ++  +  + +LNKA+YGL QAGR W      +  A+GF +  +D  VF K  DG   +++ ++ D++   + +   +     +L  +FEM D+G+AR+ +G  I R+R  R L++ QH YVE
Sbjct:  650 KWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVE 856          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.070e-40
Identity = 81/220 (36.82%), Postives = 132/220 (60.00%), Query Frame = 0
Query:    1 LAQKILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVK 220
            ++ K  +  K  K+GK++K+K R+VA+GF Q+  V Y    SP P++AS  ++LA A  K   L H+D +QA   A +DEE++ ++P    + S  + +  +AIYGL Q+GR W     + +   GFEQ K DPCVFRK+VD    +++V++ D++     D+   +     L +KF   ++G+ +++ GC I R+ +A  L+I Q  Y++SMVE F+VK
Sbjct:  891 VSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1109          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 155 bits (391), Expect = 9.850e-40
Identity = 81/212 (38.21%), Postives = 125/212 (58.96%), Query Frame = 0
Query:    4 KILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE 215
            K ++K K G DG +EKYK RLVA+GF QV G+ YT+ ++P    AS R +LA A   + ++   D + AFL  D+DEE+YM  P  +   + +V RL K++YGL QA R W     ++   +GFE+   D  +F KV +G   +++ ++ D++     D+ T+D F   L ++FEM D+G AR+ +G  I R+R    L I Q  Y+E ++E
Sbjct: 1036 KWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENG-VILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILE 1246          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 154 bits (388), Expect = 2.190e-39
Identity = 85/215 (39.53%), Postives = 128/215 (59.53%), Query Frame = 0
Query:    6 LYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTA-VGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNV 219
            +Y+ K   DG++ +YK RLVAQGF Q  G+ Y E ++P   T S R+LLA A  +N EL  FD   A+L AD+DEE+YM+ P  Y+E S  + RL KA+YGL QAG  WN+     +TA +GF++  +DPCV+ K        +V +H D++   A     MD     L + +++ D+G  R  +G  I+R+RK R L I Q  Y++++++ F +
Sbjct:   64 VYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKK-SPKGLTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKM 277          
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.180e-38
Identity = 80/211 (37.91%), Postives = 122/211 (57.82%), Query Frame = 0
Query:   10 KVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATASTRILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRLNKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVVVHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETFNVK 220
            K  KDGK+EK+K RLVA+GF Q+  V Y    SP P++AS +++LA A  K+ +L H+D +QAF  A +DE++++++P    E S  V +  +AIYGL Q+GR W     + +   GFEQ K DPCVFRK+ D           D +     D    +  A  L + F   D+G+  ++ GC + R+ +A  L+I Q  Y++S+V  F+V+
Sbjct:   54 KTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLA-SLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQ 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100343.36.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060SSE0_PYCCI1.780e-4139.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A401G4V0_9APHY1.140e-4040.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK1.540e-4036.94Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JLS1_9PHAE2.920e-4036.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GXA0_9APHY4.170e-4035.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H123_9APHY5.100e-4039.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JQW4_9PHAE7.070e-4036.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU9.850e-4038.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V3W8_TRAPU2.190e-3939.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JCG0_9PHAE1.180e-3837.91Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..220
e-value: 1.4E-46
score: 159.1
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100343contigH-elongata_contig100343:197..859 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100343.36.1mRNA_H-elongata_contig100343.36.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100343 197..859 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100343.36.1 ID=prot_H-elongata_contig100343.36.1|Name=mRNA_H-elongata_contig100343.36.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
LAQKILYKRKVGKDGKVEKYKCRLVAQGFWQVGGVHYTEKYSPTPATAST
RILLATAVAKNGELRHFDTEQAFLKADIDEELYMKIPEEYQEFSRAVGRL
NKAIYGLVQAGRCWNNTFCNDMTAVGFEQEKTDPCVFRKVVDGDAKVMVV
VHRDELFTHAKDKATMDRFAVELGQKFEMNDMGDARYYMGCHITRNRKAR
ELKIDQHLYVESMVETFNVKE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2