Homology
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
D7G200_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G200_ECTSI)
HSP 1 Score: 110 bits (275), Expect = 7.530e-27
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 1
Query: 22 TPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
TP +SLVFGY+VHVGCMKSVA+ TSG+RAGQLLVTGGADE +RIYDLRD+ ELGELQQH+GT+
Sbjct: 60 TPPQPLSLVFGYNVHVGCMKSVAIATSGSRAGQLLVTGGADERVRIYDLRDRTELGELQQHNGTI 124
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
A0A836CGS2_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS2_9STRA)
HSP 1 Score: 85.1 bits (209), Expect = 1.160e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 16 ATTPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
AT P + +S+ +GY VH GC+KS+A+ GT AG++LVTGG DE IRIYDL + E GELQQH GTV
Sbjct: 22 ATAPDT-LSMAYGYKVHAGCVKSLAIAEKGTLAGKMLVTGGTDERIRIYDLGQRTEKGELQQHSGTV 87
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
A0A7R9Y9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y4_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 1.430e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 31 SSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
S + L F Y H+GC+KS+A+ T+ R G LLV+GG DE IRIYDL K E+GELQQH+G V
Sbjct: 38 SPLQLSFAYRAHIGCIKSLALCTTQKRGGALLVSGGTDERIRIYDLALKAEVGELQQHNGAV 99
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
A0A7R9U2R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R5_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 3.200e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 31 SSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
S + L F Y H+GC+KS+A+ T+ R G LLV+GG DE IRIYDL K E+GELQQH+G V
Sbjct: 38 SPLQLSFAYRAHIGCIKSLALCTTQKRGGALLVSGGTDERIRIYDLALKAEVGELQQHNGAV 99
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
K8ZAK0_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAK0_NANGC)
HSP 1 Score: 73.2 bits (178), Expect = 1.780e-13
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 37 MSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
+ ++F Y+ H G ++S+A+ G +AG LLV+GG DEHIR+YDLR + E+GEL H GT+
Sbjct: 53 LKMIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTI 112
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
A0A7S3YLB8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLB8_HETAK)
HSP 1 Score: 68.6 bits (166), Expect = 2.720e-13
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 31 SSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
S + L + H G +K +++T +G + G++LVTGG DE IRIYDL K ELGELQQH GT+
Sbjct: 14 SDVQLSYALHAHEGSVKCLSITQTGAKQGRILVTGGNDELIRIYDLSKKVELGELQQHSGTI 75
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
W7TL70_9STRA (Pak1ip1 protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL70_9STRA)
HSP 1 Score: 72.4 bits (176), Expect = 3.270e-13
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 40 SLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
S +F Y+ H G ++S+A+ G +AG LLV+GG DEHIR+YDLR + E+GEL H GT+
Sbjct: 37 SQIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTI 95
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
A0A0C2X428_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2X428_9AGAM)
HSP 1 Score: 63.2 bits (152), Expect = 6.060e-10
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 QPVATATTPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
+P T +S +F + H+ C+K+VA + G G+ L +GG DE I+++DLR K+ELG LQQH G+V
Sbjct: 88 EPTGRETGQTSEFKPIFVFPAHISCVKAVAASPQG---GKWLASGGTDEIIKVWDLRRKKELGSLQQHQGSV 156
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
G4TBN7_SERID (Related to MAK11 protein (Maintenance of killer toxin-encoding satellite M1 dsRNA) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TBN7_SERID)
HSP 1 Score: 60.1 bits (144), Expect = 7.400e-9
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 46 VFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
VF + H+ C+K+VA + G G+ L TG DE I+I+DLR ++ELG LQQH G++
Sbjct: 106 VFCFPAHISCVKAVAASPQG---GKWLATGATDETIKIWDLRRRKELGSLQQHQGSI 159
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match:
A0A2G8RTK2_9APHY (Transporter n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RTK2_9APHY)
HSP 1 Score: 59.7 bits (143), Expect = 1.020e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 46 VFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
+F + HV C+KSVA++ G G+ L TG ADE I+++DLR ++ELG L QH G++
Sbjct: 126 IFIFPAHVSCIKSVAVSPQG---GKWLATGSADEIIKVWDLRRRKELGGLMQHQGSI 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 7.53e-27 / Id = 78.46 Expect = 1.16e-17 / Id = 59.70 Expect = 1.43e-15 / Id = 58.06 Expect = 3.20e-15 / Id = 58.06 Expect = 1.78e-13 / Id = 50.00 Expect = 2.72e-13 / Id = 51.61 Expect = 3.27e-13 / Id = 52.54 Expect = 6.06e-10 / Id = 41.67 Expect = 7.40e-9 / Id = 47.37 Expect = 1.02e-8 / Id = 47.37 Sequence D7G200_ECTSI A0A836CGS2_9STRA A0A7R9Y9Y4_9STRA A0A7R9U2R5_9STRA K8ZAK0_NANGC A0A7S3YLB8_HETAK W7TL70_9STRA A0A0C2X428_9AGAM G4TBN7_SERID A0A2G8RTK2_9APHY Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 112.1 Seed ortholog evalue 1.1e-22 Seed eggNOG ortholog 2880.D7G200 Preferred name PAK1IP1 KEGG ko ko:K11684,ko:K14830,ko:K18272 GOs GO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904 EggNOG free text desc. ribosomal large subunit biogenesis EggNOG OGs KOG0294@1,KOG0294@2759 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko03009,ko03036,ko04147 Hectar predicted targeting category other localisation Exons 1 Model size 216 Cds size 216 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929544.2052968-CDS-H-elongata_contig100166:20..236 1622929544.2052968-CDS-H-elongata_contig100166:20..236 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100166 21..236 + 1691679062.5180259-CDS-H-elongata_contig100166:20..236 1691679062.5180259-CDS-H-elongata_contig100166:20..236 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100166 21..236 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100166.19.1
>prot_H-elongata_contig100166.19.1 ID=prot_H-elongata_contig100166.19.1|Name=mRNA_H-elongata_contig100166.19.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QPVATATTPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEH back to top mRNA from alignment at H-elongata_contig100166:21..236+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100166.19.1 ID=mRNA_H-elongata_contig100166.19.1|Name=mRNA_H-elongata_contig100166.19.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig100166:21..236+ (Himanthalia elongata Himel1 dioecious)CAGCCAGTGGCCACAGCTACTACCCCCAGCAGCTCCATGTCTCTCGTGTT
TGGATATAGCGTTCACGTGGGCTGCATGAAATCAGTGGCAATGACTACGT
CTGGCACGCGCGCGGGTCAGCTCCTAGTAACGGGCGGGGCAGATGAGCAC
ATCCGAATCTACGACCTAAGAGACAAAAGGGAGCTTGGCGAGCTGCAGCA
GCACGACGGTACGGTG back to top Coding sequence (CDS) from alignment at H-elongata_contig100166:21..236+
>mRNA_H-elongata_contig100166.19.1 ID=mRNA_H-elongata_contig100166.19.1|Name=mRNA_H-elongata_contig100166.19.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig100166:21..236+ (Himanthalia elongata Himel1 dioecious) back to top