mRNA_H-elongata_contig10004.8.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10004.8.1
Unique NamemRNA_H-elongata_contig10004.8.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10004.8.1 vs. uniprot
Match: D8LB37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB37_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.380e-41
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 3 
Query:    3 AASICRQGTRHTDGLLFGSVSKRLGTETHDTHEKRSTTHREAVLSGYVRSPERCWFYDALGVVDEKRLERLIPPGEQLAGFFVIRKGRSTRPSLREIE 296
            A S  R+GTR+TDGLLFGSV++R GTET D HE+R+TTHREA LSGYVRSP RC FYD  G +DE RL  LIP G++LAG+FV+ KG STRPSLREIE
Sbjct:   26 AGSEPRKGTRYTDGLLFGSVNRRQGTETEDDHERRATTHREAALSGYVRSPARCGFYDEFGAIDEGRLALLIPQGQRLAGYFVVHKGGSTRPSLREIE 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10004.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB37_ECTSI2.380e-4170.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10004contigH-elongata_contig10004:5919..7563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10004.8.1prot_H-elongata_contig10004.8.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10004 5919..7563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.291321-CDS-H-elongata_contig10004:5918..59881622929543.291321-CDS-H-elongata_contig10004:5918..5988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10004 5919..5988 -
1691679061.8364315-CDS-H-elongata_contig10004:5918..59881691679061.8364315-CDS-H-elongata_contig10004:5918..5988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10004 5919..5988 -
1622929543.306444-CDS-H-elongata_contig10004:6363..64641622929543.306444-CDS-H-elongata_contig10004:6363..6464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10004 6364..6464 -
1691679061.8580549-CDS-H-elongata_contig10004:6363..64641691679061.8580549-CDS-H-elongata_contig10004:6363..6464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10004 6364..6464 -
1622929543.320719-CDS-H-elongata_contig10004:7434..75631622929543.320719-CDS-H-elongata_contig10004:7434..7563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10004 7435..7563 -
1691679061.915522-CDS-H-elongata_contig10004:7434..75631691679061.915522-CDS-H-elongata_contig10004:7434..7563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10004 7435..7563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10004.8.1

>prot_H-elongata_contig10004.8.1 ID=prot_H-elongata_contig10004.8.1|Name=mRNA_H-elongata_contig10004.8.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MLPRSVDRVRVTRTACCSEALARGWGQRRMILMRNVRLRTGRPCSLVTCA
RRNVAGFMMLSEWWMRSDWRGSSLLASNSPASSSFEKEDPRDHHFEKLRR
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mRNA from alignment at H-elongata_contig10004:5919..7563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10004.8.1 ID=mRNA_H-elongata_contig10004.8.1|Name=mRNA_H-elongata_contig10004.8.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1645bp|location=Sequence derived from alignment at H-elongata_contig10004:5919..7563- (Himanthalia elongata Himel1 dioecious)
ATGCTGCCTCGATCTGTCGACAGGGTACGCGTCACACGGACGGCCTGCTG
TTCGGAAGCGTTAGCAAGAGGCTGGGGACAGAGACGCATGATACTCATGA
GAAACGTTCGACTACGCACAGGGAGGCCGGTAGGGCTTGGAAATTTGGGA
GGGGAGGAACTGGGTGGGGAACCTCGTCGTTTGTCAAAGCAATCCCTTGT
ATCATGGCGAAAAATACTATTGGGTCCATGAAAATAATTAGCTCGGGGAC
TGATTCACCCCGGTCTTCGGAGGTTTGTGCTTAGACGTACGATTCCCCCT
TGTGCTTCTTCTGGACTCAGCATCGCCAATATTTCGCCACCACACTCAAT
AAAGAATTGCCTACGGAACCCTATCCCACGATCGATGTCCTGTGAACATT
CGCGTTAGAGTACAATCGGTTCAACGTTTGTTTCTTCCCCGACATCATGT
TGTATAGTTTTTGCTGTTGCCAGTGTAACCGTCGACCCGATAGATTTATT
ATTGGGGAACACGATTAATCATATGACGATTTGTGCTCAAAAGTAGTAAT
GTACACATTCGAACCTGACGATAGTTGATCCGCTGGACTGCACTTCTCAC
GCGGCTAATGGATTTTCCGAGGCTGGGAATGAGTTCAAGGTTTTAAATAA
ATACCTAATTACCGGGGATTGAAATCAACGTTTCGTTTATGTTGAAAGTC
ATCTACCAACTTCAAACCGAAGTCACGCGAGGCCCCCTTTATTTTCAAGA
CGATTGGTATAAACAGTGTGTGGATTCTTGGAGGACTTGAACGCTTTACA
TAACTGTGTTTTAAATAAAACCAAGCACTTCAGATCTGACCGCTGCAACT
AGGGGCGGGGAGCAAGCCTCGCCTCCACCTTTTTTGTAGCCACGAAAATA
TGTTAAGTTACATCGCCCCCATTAATAGTGTGATTATTTGTCTTGAAACT
CGACCTAAGTGACTCCGGCAGTTTTTGTGTCTCATCAATTTTAAATGCTG
CAAAATGCAATGATGACAATATGAGAGTACTATCATTTCGGGACCTTGTC
TAACCCTAACTTAAGGATCCTTCGCTGCCCCACCCACGCCCACATGTAGT
GCTCTCTGGTTACGTGCGCTCGCCGGAACGTTGCTGGTTTTATGATGCTC
TCGGAGTGGTGGATGAGAAGCGACTGGAGAGGCTCATCCCTCCTGGCGAG
GTAACGCAGCGGGAGAGAGTTTGGAATTATCTCGGGGATAATCTTGACGG
GAGTCGTGGTGGATCAGGATGTGTCTGGCTCTCGTGAAGTTCACAGTAGC
GGGACAATGCTGCACCTCAGGAAGGTTTACCGGACCTCTCGTCGAAGCTC
TGTTTTCCTAAAGACTTGGAGACAATCCAGTCGTAGCTCCACGTCGGTGG
AGTGAAGTGTGATTTATTTCCAGCAAGGTAAAATAGACGTCTCAAGCTCA
CCTTAACGTGTGACTATACAAATGTGTGGAGCACTTGCAGCACTGCTTGC
TTGTCTAAGGTGCCAACCTCATCTATTGCCCCTCCCCCCTCCCCAACTCG
TTTGACGTATTCGATTCTTTGCTAGCAACTCGCCGGCTTCTTCGTCATTC
GAAAAGGAAGATCCACGCGACCATCACTTCGAGAAATTGAGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig10004:5919..7563-

>mRNA_H-elongata_contig10004.8.1 ID=mRNA_H-elongata_contig10004.8.1|Name=mRNA_H-elongata_contig10004.8.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig10004:5919..7563- (Himanthalia elongata Himel1 dioecious)
ATGCTGCCTCGATCTGTCGACAGGGTACGCGTCACACGGACGGCCTGCTG
TTCGGAAGCGTTAGCAAGAGGCTGGGGACAGAGACGCATGATACTCATGA
GAAACGTTCGACTACGCACAGGGAGGCCGATGCTGCCTCGATCTGTCGAC
AGGGTACGCGTCACACGGACGGCCTGCTGTTCGGAAGCGTTAGCAAGAGG
CTGGGGACAGAGACGCATGATACTCATGAGAAACGTTCGACTACGCACAG
GGAGGCCGTGCTCTCTGGTTACGTGCGCTCGCCGGAACGTTGCTGGTTTT
ATGATGCTCTCGGAGTGGTGGATGAGAAGCGACTGGAGAGGCTCATCCCT
CCTGGCGAGTGCTCTCTGGTTACGTGCGCTCGCCGGAACGTTGCTGGTTT
TATGATGCTCTCGGAGTGGTGGATGAGAAGCGACTGGAGAGGCTCATCCC
TCCTGGCGAGCAACTCGCCGGCTTCTTCGTCATTCGAAAAGGAAGATCCA
CGCGACCATCACTTCGAGAAATTGAGGCGACAACTCGCCGGCTTCTTCGT
CATTCGAAAAGGAAGATCCACGCGACCATCACTTCGAGAAATTGAGGCGA
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