Homology
BLAST of mRNA_H-elongata_contig10004.8.1 vs. uniprot
Match:
D8LB37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB37_ECTSI)
HSP 1 Score: 145 bits (367), Expect = 2.380e-41
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 3
Query: 3 AASICRQGTRHTDGLLFGSVSKRLGTETHDTHEKRSTTHREAVLSGYVRSPERCWFYDALGVVDEKRLERLIPPGEQLAGFFVIRKGRSTRPSLREIE 296
A S R+GTR+TDGLLFGSV++R GTET D HE+R+TTHREA LSGYVRSP RC FYD G +DE RL LIP G++LAG+FV+ KG STRPSLREIE
Sbjct: 26 AGSEPRKGTRYTDGLLFGSVNRRQGTETEDDHERRATTHREAALSGYVRSPARCGFYDEFGAIDEGRLALLIPQGQRLAGYFVVHKGGSTRPSLREIE 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10004.8.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.38e-41 / Id = 70.41 Sequence D8LB37_ECTSI
Match Name E-value Identity Description
D8LB37_ECTSI 2.380e-41 70.41 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 300 Cds size 300 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929543.291321-CDS-H-elongata_contig10004:5918..5988 1622929543.291321-CDS-H-elongata_contig10004:5918..5988 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10004 5919..5988 - 1691679061.8364315-CDS-H-elongata_contig10004:5918..5988 1691679061.8364315-CDS-H-elongata_contig10004:5918..5988 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10004 5919..5988 - 1622929543.306444-CDS-H-elongata_contig10004:6363..6464 1622929543.306444-CDS-H-elongata_contig10004:6363..6464 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10004 6364..6464 - 1691679061.8580549-CDS-H-elongata_contig10004:6363..6464 1691679061.8580549-CDS-H-elongata_contig10004:6363..6464 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10004 6364..6464 - 1622929543.320719-CDS-H-elongata_contig10004:7434..7563 1622929543.320719-CDS-H-elongata_contig10004:7434..7563 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10004 7435..7563 - 1691679061.915522-CDS-H-elongata_contig10004:7434..7563 1691679061.915522-CDS-H-elongata_contig10004:7434..7563 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10004 7435..7563 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10004.8.1
>prot_H-elongata_contig10004.8.1 ID=prot_H-elongata_contig10004.8.1|Name=mRNA_H-elongata_contig10004.8.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MLPRSVDRVRVTRTACCSEALARGWGQRRMILMRNVRLRTGRPCSLVTCA back to top mRNA from alignment at H-elongata_contig10004:5919..7563-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10004.8.1 ID=mRNA_H-elongata_contig10004.8.1|Name=mRNA_H-elongata_contig10004.8.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1645bp|location=Sequence derived from alignment at H-elongata_contig10004:5919..7563- (Himanthalia elongata Himel1 dioecious)ATGCTGCCTCGATCTGTCGACAGGGTACGCGTCACACGGACGGCCTGCTG
TTCGGAAGCGTTAGCAAGAGGCTGGGGACAGAGACGCATGATACTCATGA
GAAACGTTCGACTACGCACAGGGAGGCCG GTAGGGCTTGGAAATTTGGGA
GGGGAGGAACTGGGTGGGGAACCTCGTCGTTTGTCAAAGCAATCCCTTGT
ATCATGGCGAAAAATACTATTGGGTCCATGAAAATAATTAGCTCGGGGAC
TGATTCACCCCGGTCTTCGGAGGTTTGTGCTTAGACGTACGATTCCCCCT
TGTGCTTCTTCTGGACTCAGCATCGCCAATATTTCGCCACCACACTCAAT
AAAGAATTGCCTACGGAACCCTATCCCACGATCGATGTCCTGTGAACATT
CGCGTTAGAGTACAATCGGTTCAACGTTTGTTTCTTCCCCGACATCATGT
TGTATAGTTTTTGCTGTTGCCAGTGTAACCGTCGACCCGATAGATTTATT
ATTGGGGAACACGATTAATCATATGACGATTTGTGCTCAAAAGTAGTAAT
GTACACATTCGAACCTGACGATAGTTGATCCGCTGGACTGCACTTCTCAC
GCGGCTAATGGATTTTCCGAGGCTGGGAATGAGTTCAAGGTTTTAAATAA
ATACCTAATTACCGGGGATTGAAATCAACGTTTCGTTTATGTTGAAAGTC
ATCTACCAACTTCAAACCGAAGTCACGCGAGGCCCCCTTTATTTTCAAGA
CGATTGGTATAAACAGTGTGTGGATTCTTGGAGGACTTGAACGCTTTACA
TAACTGTGTTTTAAATAAAACCAAGCACTTCAGATCTGACCGCTGCAACT
AGGGGCGGGGAGCAAGCCTCGCCTCCACCTTTTTTGTAGCCACGAAAATA
TGTTAAGTTACATCGCCCCCATTAATAGTGTGATTATTTGTCTTGAAACT
CGACCTAAGTGACTCCGGCAGTTTTTGTGTCTCATCAATTTTAAATGCTG
CAAAATGCAATGATGACAATATGAGAGTACTATCATTTCGGGACCTTGTC
TAACCCTAACTTAAGGATCCTTCGCTGCCCCACCCACGCCCACATGTAGT
GCTCTCTGGTTACGTGCGCTCGCCGGAACGTTGCTGGTTTTATGATGCTC
TCGGAGTGGTGGATGAGAAGCGACTGGAGAGGCTCATCCCTCCTGGCGAG
GTAACGCAGCGGGAGAGAGTTTGGAATTATCTCGGGGATAATCTTGACGG
GAGTCGTGGTGGATCAGGATGTGTCTGGCTCTCGTGAAGTTCACAGTAGC
GGGACAATGCTGCACCTCAGGAAGGTTTACCGGACCTCTCGTCGAAGCTC
TGTTTTCCTAAAGACTTGGAGACAATCCAGTCGTAGCTCCACGTCGGTGG
AGTGAAGTGTGATTTATTTCCAGCAAGGTAAAATAGACGTCTCAAGCTCA
CCTTAACGTGTGACTATACAAATGTGTGGAGCACTTGCAGCACTGCTTGC
TTGTCTAAGGTGCCAACCTCATCTATTGCCCCTCCCCCCTCCCCAACTCG
TTTGACGTATTCGATTCTTTGCTAGCAACTCGCCGGCTTCTTCGTCATTC
GAAAAGGAAGATCCACGCGACCATCACTTCGAGAAATTGAGGCGA back to top Coding sequence (CDS) from alignment at H-elongata_contig10004:5919..7563-
>mRNA_H-elongata_contig10004.8.1 ID=mRNA_H-elongata_contig10004.8.1|Name=mRNA_H-elongata_contig10004.8.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig10004:5919..7563- (Himanthalia elongata Himel1 dioecious) back to top