Homology
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Match:
A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE)
HSP 1 Score: 50.4 bits (119), Expect = 3.200e-5
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query: 3 PITSGYLMRRLVISEGTKLIAKRGDHNLGD-IEGKRAVTDADFVDMKLTQ 149
P TSGYLM+RL +S T IA + L + EGK +TDADF+DM LTQ
Sbjct: 548 PSTSGYLMQRLAVSASTTAIAAARANELEEGPEGKMILTDADFLDMNLTQ 597
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Match:
D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI)
HSP 1 Score: 49.7 bits (117), Expect = 6.000e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query: 3 PITSGYLMRRLVISEGTKLIAKRGDHNLGD-IEGKRAVTDADFVDMKLTQ 149
P TSGYLM+RL +S T +IA + L + EGK +TDADF+D+ LTQ
Sbjct: 663 PSTSGYLMQRLAVSASTTVIATARANELEEGPEGKMILTDADFLDINLTQ 712
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.20e-5 / Id = 54.00 Expect = 6.00e-5 / Id = 52.00 Sequence A0A6H5KDY1_9PHAE D7G5G6_ECTSI
Match Name E-value Identity Description
A0A6H5KDY1_9PHAE 3.200e-5 54.00 WW domain-containing protein n=1 Tax=Ectocarpus sp... [more] D7G5G6_ECTSI 6.000e-5 52.00 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor Ec32 ortholog description WW domain Ec32 ortholog Ec-22_000530.1 Exons 2 Model size 259 Cds size 141 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929542.6806433-UTR-H-elongata_contig100:23977..24000 1622929542.6806433-UTR-H-elongata_contig100:23977..24000 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig100 23978..24000 + 1691679060.5734808-UTR-H-elongata_contig100:23977..24000 1691679060.5734808-UTR-H-elongata_contig100:23977..24000 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig100 23978..24000 + 1622929542.7241936-UTR-H-elongata_contig100:24543..24638 1622929542.7241936-UTR-H-elongata_contig100:24543..24638 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig100 24544..24638 + 1691679060.6743608-UTR-H-elongata_contig100:24543..24638 1691679060.6743608-UTR-H-elongata_contig100:24543..24638 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig100 24544..24638 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929542.697278-CDS-H-elongata_contig100:24000..24047 1622929542.697278-CDS-H-elongata_contig100:24000..24047 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100 24001..24047 + 1691679060.6237316-CDS-H-elongata_contig100:24000..24047 1691679060.6237316-CDS-H-elongata_contig100:24000..24047 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100 24001..24047 + 1622929542.7130284-CDS-H-elongata_contig100:24449..24543 1622929542.7130284-CDS-H-elongata_contig100:24449..24543 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100 24450..24543 + 1691679060.642328-CDS-H-elongata_contig100:24449..24543 1691679060.642328-CDS-H-elongata_contig100:24449..24543 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100 24450..24543 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100.3.1
>prot_H-elongata_contig100.3.1 ID=prot_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MRRLVISEGTKLIAKRGDHNLGDIEGKRAVTDADFVDMKLTQALTM* back to top mRNA from alignment at H-elongata_contig100:23978..24638+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100.3.1 ID=mRNA_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=661bp|location=Sequence derived from alignment at H-elongata_contig100:23978..24638+ (Himanthalia elongata Himel1 dioecious)ATCCGATCACTTCGGGGTATCTT ATGCGGCGGCTCGTAATCTCAGAGGGT
ACCAAGTTGATCGCGAAGAG GTACGCGAACATTATTCGGATATTTATTGG
ACGTATAATTGTGGTAAAACACGTGTCCGGGACCTTTACCCAACGTGGGA
TACGCGGAGCCTGCCGCAGGTTGGATTGTGCGGTTCAGATACAAAAATAG
AGGACGTTGCAGGGAATGAGCGGGTTCTAATGATATATCTTCATTATAAT
ATAAGTGAGAGATGGTTGACCGTTCAACATGTTATCTCGCAAGGCGTTGT
TTGCAAGAGAACGCCATAATATATCCCGGCGCGTATCTTAAATAATTAAT
GATACATGTTGGTAAGTTATTGGCTCGAAAAGCTCCTACTATCACCTCAG
CAGCAATATGTAATTAAAGGGACATTATGAGTACTCCTCTTGTCTATGTG
CCATGGTCAAAACGCTATGCAGGGGAGACCATAATTTGGGAGATATCGAA
GGGAAACGTGCTGTCACCGACGCCGACTTCGTGGACATGAAGCTGACTCA
GGCACTAACTATGTAG GGTTCACGAGGGGCAGAATGAATAGCACGACACT
ACCCCACGGGGCTGACACTCTCACCCGAACAGGGCGAAGGACGAAAAAAA
ACAATATCCAC back to top Coding sequence (CDS) from alignment at H-elongata_contig100:23978..24638+
>mRNA_H-elongata_contig100.3.1 ID=mRNA_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig100:23978..24638+ (Himanthalia elongata Himel1 dioecious) back to top