mRNA_H-elongata_contig100.3.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100.3.1
Unique NamemRNA_H-elongata_contig100.3.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Match: A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.200e-5
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:    3 PITSGYLMRRLVISEGTKLIAKRGDHNLGD-IEGKRAVTDADFVDMKLTQ 149
            P TSGYLM+RL +S  T  IA    + L +  EGK  +TDADF+DM LTQ
Sbjct:  548 PSTSGYLMQRLAVSASTTAIAAARANELEEGPEGKMILTDADFLDMNLTQ 597
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BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Match: D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 6.000e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:    3 PITSGYLMRRLVISEGTKLIAKRGDHNLGD-IEGKRAVTDADFVDMKLTQ 149
            P TSGYLM+RL +S  T +IA    + L +  EGK  +TDADF+D+ LTQ
Sbjct:  663 PSTSGYLMQRLAVSASTTVIATARANELEEGPEGKMILTDADFLDINLTQ 712
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDY1_9PHAE3.200e-554.00WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G5G6_ECTSI6.000e-552.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100contigH-elongata_contig100:23978..24638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-22_000530.1
Exons2
Model size259
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100.3.1prot_H-elongata_contig100.3.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100 24001..24543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.6806433-UTR-H-elongata_contig100:23977..240001622929542.6806433-UTR-H-elongata_contig100:23977..24000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100 23978..24000 +
1691679060.5734808-UTR-H-elongata_contig100:23977..240001691679060.5734808-UTR-H-elongata_contig100:23977..24000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100 23978..24000 +
1622929542.7241936-UTR-H-elongata_contig100:24543..246381622929542.7241936-UTR-H-elongata_contig100:24543..24638Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100 24544..24638 +
1691679060.6743608-UTR-H-elongata_contig100:24543..246381691679060.6743608-UTR-H-elongata_contig100:24543..24638Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100 24544..24638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.697278-CDS-H-elongata_contig100:24000..240471622929542.697278-CDS-H-elongata_contig100:24000..24047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100 24001..24047 +
1691679060.6237316-CDS-H-elongata_contig100:24000..240471691679060.6237316-CDS-H-elongata_contig100:24000..24047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100 24001..24047 +
1622929542.7130284-CDS-H-elongata_contig100:24449..245431622929542.7130284-CDS-H-elongata_contig100:24449..24543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100 24450..24543 +
1691679060.642328-CDS-H-elongata_contig100:24449..245431691679060.642328-CDS-H-elongata_contig100:24449..24543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100 24450..24543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100.3.1

>prot_H-elongata_contig100.3.1 ID=prot_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MRRLVISEGTKLIAKRGDHNLGDIEGKRAVTDADFVDMKLTQALTM*
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mRNA from alignment at H-elongata_contig100:23978..24638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100.3.1 ID=mRNA_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=661bp|location=Sequence derived from alignment at H-elongata_contig100:23978..24638+ (Himanthalia elongata Himel1 dioecious)
ATCCGATCACTTCGGGGTATCTTATGCGGCGGCTCGTAATCTCAGAGGGT
ACCAAGTTGATCGCGAAGAGGTACGCGAACATTATTCGGATATTTATTGG
ACGTATAATTGTGGTAAAACACGTGTCCGGGACCTTTACCCAACGTGGGA
TACGCGGAGCCTGCCGCAGGTTGGATTGTGCGGTTCAGATACAAAAATAG
AGGACGTTGCAGGGAATGAGCGGGTTCTAATGATATATCTTCATTATAAT
ATAAGTGAGAGATGGTTGACCGTTCAACATGTTATCTCGCAAGGCGTTGT
TTGCAAGAGAACGCCATAATATATCCCGGCGCGTATCTTAAATAATTAAT
GATACATGTTGGTAAGTTATTGGCTCGAAAAGCTCCTACTATCACCTCAG
CAGCAATATGTAATTAAAGGGACATTATGAGTACTCCTCTTGTCTATGTG
CCATGGTCAAAACGCTATGCAGGGGAGACCATAATTTGGGAGATATCGAA
GGGAAACGTGCTGTCACCGACGCCGACTTCGTGGACATGAAGCTGACTCA
GGCACTAACTATGTAGGGTTCACGAGGGGCAGAATGAATAGCACGACACT
ACCCCACGGGGCTGACACTCTCACCCGAACAGGGCGAAGGACGAAAAAAA
ACAATATCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig100:23978..24638+

>mRNA_H-elongata_contig100.3.1 ID=mRNA_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig100:23978..24638+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCGGCTCGTAATCTCAGAGGGTACCAAGTTGATCGCGAAGAGATG
CGGCGGCTCGTAATCTCAGAGGGTACCAAGTTGATCGCGAAGAGGGGAGA
CCATAATTTGGGAGATATCGAAGGGAAACGTGCTGTCACCGACGCCGACT
TCGTGGACATGAAGCTGACTCAGGCACTAACTATGTAGGGGAGACCATAA
TTTGGGAGATATCGAAGGGAAACGTGCTGTCACCGACGCCGACTTCGTGG
ACATGAAGCTGACTCAGGCACTAACTATGTAG
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