mRNA_H-elongata_contig100.3.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Match: A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE) HSP 1 Score: 50.4 bits (119), Expect = 3.200e-5 Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 3 PITSGYLMRRLVISEGTKLIAKRGDHNLGD-IEGKRAVTDADFVDMKLTQ 149
P TSGYLM+RL +S T IA + L + EGK +TDADF+DM LTQ
Sbjct: 548 PSTSGYLMQRLAVSASTTAIAAARANELEEGPEGKMILTDADFLDMNLTQ 597
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Match: D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI) HSP 1 Score: 49.7 bits (117), Expect = 6.000e-5 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 3 PITSGYLMRRLVISEGTKLIAKRGDHNLGD-IEGKRAVTDADFVDMKLTQ 149
P TSGYLM+RL +S T +IA + L + EGK +TDADF+D+ LTQ
Sbjct: 663 PSTSGYLMQRLAVSASTTVIATARANELEEGPEGKMILTDADFLDINLTQ 712 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100.3.1 >prot_H-elongata_contig100.3.1 ID=prot_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp MRRLVISEGTKLIAKRGDHNLGDIEGKRAVTDADFVDMKLTQALTM*back to top mRNA from alignment at H-elongata_contig100:23978..24638+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100.3.1 ID=mRNA_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=661bp|location=Sequence derived from alignment at H-elongata_contig100:23978..24638+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100:23978..24638+ >mRNA_H-elongata_contig100.3.1 ID=mRNA_H-elongata_contig100.3.1|Name=mRNA_H-elongata_contig100.3.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig100:23978..24638+ (Himanthalia elongata Himel1 dioecious)back to top |