mRNA_H-akashiwo_Contig1240.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1240.1.1
Unique NamemRNA_H-akashiwo_Contig1240.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A7S3Y8U8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U8_HETAK)

HSP 1 Score: 483 bits (1242), Expect = 3.240e-169
Identity = 244/254 (96.06%), Postives = 247/254 (97.24%), Query Frame = 1
Query:  106 VALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            VALDFK AFDKVWWRGLLAHLW VGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLF+RNVPQRVREALCLFYA DLTLQKDVDREEG  QRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTID  GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFV+SKIEYGNLIYWGAAEGYL+KLDRVQSSAVSML
Sbjct:    1 VALDFKGAFDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFIRNVPQRVREALCLFYADDLTLQKDVDREEGAAQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDPRGNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVRSKIEYGNLIYWGAAEGYLEKLDRVQSSAVSML 254          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A7S3Y8J9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J9_HETAK)

HSP 1 Score: 470 bits (1210), Expect = 2.810e-166
Identity = 240/264 (90.91%), Postives = 248/264 (93.94%), Query Frame = 1
Query:   85 ARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGG---VIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            ARKDVRLV LDFK A DKVWWRGLLAHLW VGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLF+RNVPQRVREALCLFYA DLTLQKDVDREEG  QRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITN   ++KVTHPPL MGG   +++EEKEQLEALGFTID  GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFV+SKIEYGNLIYWGAAEGYL+KLDRVQSSAVSML
Sbjct:    1 ARKDVRLVELDFKGACDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFIRNVPQRVREALCLFYADDLTLQKDVDREEGAAQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNLVADNKVTHPPLPMGGGVVMVIEEKEQLEALGFTIDPRGNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVRSKIEYGNLIYWGAAEGYLEKLDRVQSSAVSML 264          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 387 bits (995), Expect = 2.800e-126
Identity = 202/289 (69.90%), Postives = 231/289 (79.93%), Query Frame = 1
Query:    4 NQFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNS-AENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            NQFGFL  TGT+DVGVILAD+IS ALEARKDVRLVALDF+ AFDKVWWRGLLAHLW VGVRSKA++L +SYLSDRALFVVANG  S  +SIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYA DLTL K +DR     Q A  ELN DL+RL+ FGKEWLLEFE TKS  L I+NS  ++ K  H P  MGG  V+E+E LE LGF +D  GNWS  AEA A  AR+RLGA+RR+A +LDD    M YK FV+SKIEYG+L+YWGAA+G+L+ LD +Q SA+ +L
Sbjct:  419 NQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLSDRALFVVANGQISERVSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYADDLTLLKVIDRNNKAAQDAQLELNQDLERLFRFGKEWLLEFEATKSFGLTISNSKGKDLKGRHIPCRMGGHEVKEQEVLEILGFLVDNKGNWSKFAEATASAARQRLGALRRLAPLLDDDCINMVYKTFVRSKIEYGSLVYWGAADGHLRDLDAIQRSALKLL 707          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 181 bits (460), Expect = 3.840e-49
Identity = 116/236 (49.15%), Postives = 144/236 (61.02%), Query Frame = 1
Query:    4 NQFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGD----SSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQ-KDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGF-TIDL*GNWSLHAEAVAKEARK 693
            NQFGFL  TGT+DVGVILAD+IS ALEARKDVRLVALDF+ AFDKVWWRGLLAHLW VGVRSKA++L +SYL  +    +  G+     +S   I+       +  PL    FVRNV QRVR+ALCLFY  DLTL  K + R     Q    +L+ DL+RL+ FGKEWLLE E +                    L +G   V+E++ LE LGF   +  G WS  +++ A  AR+
Sbjct:  419 NQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLVGQG--PLRGGEWADLRASQHQIRCATGSYLVPPPL----FVRNVRQRVRKALCLFYVNDLTLLLKVIGRNNEAAQNVQWDLSQDLKRLFCFGKEWLLELEAS--------------------LGIGEHEVKEQKVLEILGFFNENNKGTWSQFSKSTATAARE 628          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A0P4VTV9_SCYOL (Reverse transcriptase domain-containing protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VTV9_SCYOL)

HSP 1 Score: 166 bits (421), Expect = 3.320e-43
Identity = 96/287 (33.45%), Postives = 161/287 (56.10%), Query Frame = 1
Query:    7 QFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            QFGF  G  T D+ ++L      AL+   D  +VALD   AFD+VW  GLL  L   G++    +L+  YL  R L VV NG +S  + +++ VPQG++  P+L++++V ++ +++       YA D TL     R E V  RAAEE+N  L  + E+G  W + F P K+Q ++++ S          LS GG+ +E +E ++ LG  +D    +  H + +A +A  R+ ++RR+A++LD R +++ YKA ++  +EY  L +   A  ++ KLD +Q  A+ ++
Sbjct:  322 QFGFRPGRSTSDLLMLLTGGWQDALDGGLDSVVVALDIAGAFDRVWHGGLLEKLRAKGIQGDLLQLLGDYLQGRTLQVVVNGQASESLPVRASVPQGSVLGPVLWNIYVDDLLRQLPAVSA--YADDCTLSCTYPRHESV--RAAEEINQQLGVIQEWGARWQVTFAPEKTQAMVVSRSPAAEPAVEGGLSFGGLPLELQESVKILGVEVDRGLRFDRHVKHIALKASHRVSSLRRVANLLDRRGRLLLYKAQIRPYLEYAALSWMSCAATHISKLDGIQRRALRLV 604          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A3D5S1K1_9BACT (Reverse transcriptase domain-containing protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5S1K1_9BACT)

HSP 1 Score: 161 bits (407), Expect = 5.710e-41
Identity = 95/282 (33.69%), Postives = 157/282 (55.67%), Query Frame = 1
Query:    7 QFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRA--AEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQ 846
            Q+GF  G  T D+  ++ +RI  +L A  + R VALD   AFDKVW  GL+  L   GV+   F +++S+LSDR + VV +G SS   S+ +GVPQG++  P LF +F+ ++P  +   L + YA D T+   ++    +  R   A EL  DL+ + E+G++WL+ F   K++ L +    E      P +SM G+ + E +  + LG T+    +W+ + E +A+ A +++G++ R    L + +    YKA ++  +EY   I+ GA+   L  LDR+Q
Sbjct:  566 QYGFRSGRSTADILTVINERIYRSLNASGETRAVALDISKAFDKVWHAGLMLKLTGYGVQGSLFDIIKSFLSDREIKVVLDGQSSKAYSVNAGVPQGSVLGPTLFLVFINDLPDNILSKLAI-YADDTTIYSPLESSVDLFDRVELAGELELDLRTVVEWGEKWLVSFNAAKTKLLSVNRFKEPFL---PSVSMNGLQLPESDHAKLLGLTLTNTFSWNQYIEDIARAAARKVGSLYRARGYLSEESIFYLYKATIRPCMEYCCHIWAGASRESLNLLDRIQ 843          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A2H9T4U7_9ZZZZ (Reverse transcriptase domain-containing protein n=1 Tax=invertebrate metagenome TaxID=1711999 RepID=A0A2H9T4U7_9ZZZZ)

HSP 1 Score: 156 bits (394), Expect = 3.350e-39
Identity = 93/289 (32.18%), Postives = 153/289 (52.94%), Query Frame = 1
Query:    1 PNQFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            P+Q GF HG   V+  + +   I  AL+  K++R+V  D   AFD+VW +GLL+ L   G+R    K  ++YL +R   VV  G  S+   IK+GVPQG+I  PLLF LF+ ++ + +R  + LF A D +L   +D      + +A +LN DL++++E+   WL+ F PTK++ L+I  S + +   HPPL M  +++ E      LG T+   G W+ H   +  +   +L  +RR    L   +    Y   ++   EYGN+++    +     L+ +Q  A  ++
Sbjct:  663 PHQSGFRHGDSPVNQLLAITHDIYSALDHGKEIRMVFCDISKAFDRVWHKGLLSKLSGFGIRGSLLKWFENYLYNRKQRVVIKGKFSNWSEIKAGVPQGSILGPLLFLLFINDIVKDIRANIKLF-ADDTSLYVIIDSP----RISAVDLNFDLRKIHEWSVNWLVNFNPTKTETLLI--SKKTNSPIHPPLHMNNILLSEVSSHRHLGLTLSNNGGWTDHINLIISKVSPKLNILRRFKFTLGRTSLQTLYFTLIRPIFEYGNIVWDNLTKTQSDMLENLQLEAARIV 944          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: T2M4I6_HYDVU (Patched domain-containing protein 2 (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M4I6_HYDVU)

HSP 1 Score: 154 bits (390), Expect = 1.140e-38
Identity = 93/290 (32.07%), Postives = 158/290 (54.48%), Query Frame = 1
Query:    4 NQFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRA--AEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            NQ+GF     T D+   + +R   AL+   + R +ALD   AFDKVW  GLL  L   GV  K F+ ++S+LS+R + V+  G  SS   + SGVPQG+I  P+LF +++ ++P  +   + LF A D TL   +D++  +  R   A +L  DL  + ++G +WL+ F   K+Q L+  N+  N  + + P+ M G  + E   L  LG ++    +W  + +++AK A  ++ ++ R  H L   + +  YK+ ++  +EY   I+ G++   L  LD+VQ   V+++
Sbjct:  854 NQYGFRSSRSTADLLTAVTERFYRALDGGSEARAIALDISKAFDKVWHAGLLHKLASYGVSGKVFESIKSFLSNRFIKVILEGQHSSLFPVTSGVPQGSILGPVLFLIYINDLPDNLSSKVALF-ADDSTLYSCLDKKSSLFDRLEQAADLESDLTSVIDWGSQWLVNFNSKKTQ-LLTANNYRN--MVNIPILMNGNPLTELSSLRLLGLSVTTDLSWKPYIQSIAKLASAKVASLYRARHFLTSDSILYLYKSLIRPCMEYCCHIWAGSSNDSLSLLDKVQKRIVNVV 1139          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A210QQ08_MIZYE (RNA-directed DNA polymerase from transposon BS n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QQ08_MIZYE)

HSP 1 Score: 151 bits (382), Expect = 1.370e-38
Identity = 87/289 (30.10%), Postives = 159/289 (55.02%), Query Frame = 1
Query:    1 PNQFGFLHGTGTVDVGVILADRISLALEARKDVRLVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            P+Q GF HG    +  + +   I LAL+  K++R+V  D   AFD+VW +GLL  L   G+R+      ++YLSDR   VV NG +S+ +++K+GVPQG+I  PLLF +++ ++ + ++  + LF A D +L   VD    + + +A+ LN DL + + + + WL+ F P+K++ L+I  S +  K  HPPL+M    + E    + LG  +   G+W+ H   +  +   ++  +R+    LD  +    Y   ++  ++YG++++    +   + L+ +Q  A  ++
Sbjct:   21 PHQSGFRHGDSPSNQLLAIIHDIYLALDNGKEIRMVFCDISKAFDRVWHKGLLCKLSSYGIRNSLLVWFENYLSDRKQRVVINGKNSNWLNVKAGVPQGSILGPLLFLIYINDIVKDIQAKIKLF-ADDTSLYVTVD----IPRVSADILNSDLNKFHNWSQRWLVNFNPSKTETLLI--SRKTIKPFHPPLNMNNTNISEVATHKHLGIFLSGNGHWNEHISYLISKISPKINILRKFKFSLDRYSLQTMYYTLIRPILDYGDILWDCLTKAQSELLENLQLEAARIV 302          
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Match: A0A2H9T4Y5_9ZZZZ (Reverse transcriptase domain-containing protein n=1 Tax=invertebrate metagenome TaxID=1711999 RepID=A0A2H9T4Y5_9ZZZZ)

HSP 1 Score: 141 bits (355), Expect = 4.640e-35
Identity = 84/255 (32.94%), Postives = 137/255 (53.73%), Query Frame = 1
Query:  103 LVALDFKDAFDKVWWRGLLAHLWVVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRVREALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEFEPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*GNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVQSKIEYGNLIYWGAAEGYLKKLDRVQSSAVSML 867
            ++  D   AFD+VW RGLL+ L   G+    F    +YL +R   VV NG  S+   I +GVPQG+I  PLLF +F+ ++   +  A+ LF A D +L   V+        +A  LND+L ++ E+ K WL+ F P+K+  L +T S + +K  HP L M   I+ E      LG T+   GNW+ H + +  +A K+L  +R +   +D ++    Y +F++  +EYG++++     G  K L+ +Q  A  ++
Sbjct:    1 MIFCDISKAFDRVWHRGLLSKLKSFGITGNLFLWFSNYLRNRCQSVVINGKQSNLAYITAGVPQGSILGPLLFLIFINDIVNNISCAIKLF-ADDTSLYVIVESP----HLSANLLNDNLSKINEWSKTWLVNFNPSKT--LTMTVSKKTNKPIHPSLFMNNTILTEVTSHTHLGITLSANGNWTDHLQHIISKASKKLAVLRNLKFSIDRKSLQTLYCSFIRPLLEYGDIVWDNITLGQSKLLESIQLEAARII 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1240.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8U8_HETAK3.240e-16996.06Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8J9_HETAK2.810e-16690.91Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y8N4_HETAK2.800e-12669.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8Z6_HETAK3.840e-4949.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P4VTV9_SCYOL3.320e-4333.45Reverse transcriptase domain-containing protein n=... [more]
A0A3D5S1K1_9BACT5.710e-4133.69Reverse transcriptase domain-containing protein n=... [more]
A0A2H9T4U7_9ZZZZ3.350e-3932.18Reverse transcriptase domain-containing protein n=... [more]
T2M4I6_HYDVU1.140e-3832.07Patched domain-containing protein 2 (Fragment) n=1... [more]
A0A210QQ08_MIZYE1.370e-3830.10RNA-directed DNA polymerase from transposon BS n=1... [more]
A0A2H9T4Y5_9ZZZZ4.640e-3532.94Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1240contigH-akashiwo_Contig1240:73427..74293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_013391-tr
Model size867
Max annot lvl7668.SPU_013391-tr|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.78e-13
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size441
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.3041742-UTR-H-akashiwo_Contig1240:73426..736301681387129.3041742-UTR-H-akashiwo_Contig1240:73426..73630Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1240 73427..73630 +
1681387129.3201435-UTR-H-akashiwo_Contig1240:74071..742931681387129.3201435-UTR-H-akashiwo_Contig1240:74071..74293Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1240 74072..74293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.312473-CDS-H-akashiwo_Contig1240:73630..740711681387129.312473-CDS-H-akashiwo_Contig1240:73630..74071Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1240 73631..74071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1240.1.1prot_H-akashiwo_Contig1240.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1240 73631..74071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1240.1.1

>prot_H-akashiwo_Contig1240.1.1 ID=prot_H-akashiwo_Contig1240.1.1|Name=mRNA_H-akashiwo_Contig1240.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=147bp
MQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFVRNVPQRV
REALCLFYAADLTLQKDVDREEGVVQRAAEELNDDLQRLYEFGKEWLLEF
EPTKSQELIITNSAENHKVTHPPLSMGGVIVEEKEQLEALGFTIDL*
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mRNA from alignment at H-akashiwo_Contig1240:73427..74293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1240.1.1 ID=mRNA_H-akashiwo_Contig1240.1.1|Name=mRNA_H-akashiwo_Contig1240.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=867bp|location=Sequence derived from alignment at H-akashiwo_Contig1240:73427..74293+ (Heterosigma akashiwo CCMP452)
CCCAACCAGTTTGGCTTCCTACATGGTACAGGGACCGTTGATGTCGGCGT CATCCTCGCCGACAGAATCTCCCTGGCCCTTGAAGCCAGGAAAGATGTGC GGTTGGTGGCACTCGACTTCAAGGATGCCTTTGATAAGGTGTGGTGGCgG GGTCTTCTTGCTCATCTCTGGGTGGTGGGTGTGCGCtCCAAGGCCTTCAA GCTGATGCAGAGCTACTTGTCAGACCGGGCCCTCTTTGTAGTGGCAAACG GTGACAGCTCCAGTCATATGAGCATCAAGTCTGGGGTGCCGCAGGGGGCC ATCTGGTCGCCTCTCCTCTTTGACCTCTTCGTTCGCAACGTCCCACAGCG AGTCAGGGAGGCTCTATGCCTCTTCTACGCAGCTGACCTCACCCTCCAGA AGGATGTAGACAGGGAAGAGGGGGTGGTGCAGAGGGCGGCAGAGGAGCTG AACGATGATCTGCAGCGCCTCTATGAGTTTGGCAAGGAGTGGCTACTAGA GTTTGAACCTACCAAGTCCCAGGAGCTGATCATCACCAACTCGGCTGAAA ATCACAAGGTGACTCACCCTCCTCTATCCATGGGGGGAGTGATTGTTGAA GAGAAGGAGCAGCTGGAGGCGCTGGGTTTCACCATTGATTTGTGAGGTAA CTGGTCCCTACATGCTGAGGCAGTAGCCAAGGAGGCCCGGAAGAGGCTTG GTGCCATTAGGAGGATCGCTCACATGCTGGATGATCGTGCCAAGATGATG GCCTACAAGGCTTTTGTACAATCAAAGATTGAGTACGGTAACCTCATCTA CTGGGGGGCGGCTGAGGGCTATCTCAAAAAACTTGACAGGGTTCAAAGCA GTGCTGTCTCGATGCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1240:73427..74293+

>mRNA_H-akashiwo_Contig1240.1.1 ID=mRNA_H-akashiwo_Contig1240.1.1|Name=mRNA_H-akashiwo_Contig1240.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=441bp|location=Sequence derived from alignment at H-akashiwo_Contig1240:73427..74293+ (Heterosigma akashiwo CCMP452)
ATGCAGAGCTACTTGTCAGACCGGGCCCTCTTTGTAGTGGCAAACGGTGA
CAGCTCCAGTCATATGAGCATCAAGTCTGGGGTGCCGCAGGGGGCCATCT
GGTCGCCTCTCCTCTTTGACCTCTTCGTTCGCAACGTCCCACAGCGAGTC
AGGGAGGCTCTATGCCTCTTCTACGCAGCTGACCTCACCCTCCAGAAGGA
TGTAGACAGGGAAGAGGGGGTGGTGCAGAGGGCGGCAGAGGAGCTGAACG
ATGATCTGCAGCGCCTCTATGAGTTTGGCAAGGAGTGGCTACTAGAGTTT
GAACCTACCAAGTCCCAGGAGCTGATCATCACCAACTCGGCTGAAAATCA
CAAGGTGACTCACCCTCCTCTATCCATGGGGGGAGTGATTGTTGAAGAGA
AGGAGCAGCTGGAGGCGCTGGGTTTCACCATTGATTTGTGA
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