mRNA_H-akashiwo_Contig81.41.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.41.1
Unique NamemRNA_H-akashiwo_Contig81.41.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A7S3USK8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USK8_HETAK)

HSP 1 Score: 129 bits (323), Expect = 3.850e-36
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
Query:    1 SVCPYYVPPGAQGPEDCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 183
            SVCPYYVPPGAQGPEDCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE
Sbjct:  107 SVCPYYVPPGAQGPEDCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 167          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A090AHW0_9GAMM (NUDIX hydrolase n=1 Tax=Thioploca ingrica TaxID=40754 RepID=A0A090AHW0_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 4.200e-11
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 VCPYYVPPGAQGPEDCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 183
            V PY+  P    P   EV+LIKEFRSP +T D F+HELPGGS+FK  EP+  A+ ELHEE
Sbjct:  248 VVPYWKHP--TDPLASEVILIKEFRSPGRTKDGFVHELPGGSSFKKGEPLQIASDELHEE 305          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A496V7H5_9GAMM (NUDIX hydrolase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496V7H5_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-9
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   46 DCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 183
            D E+VLIKEFRSPA+T D F+HELPGGSAFK    +  A+ EL+EE
Sbjct:  262 DSEIVLIKEFRSPARTKDGFVHELPGGSAFKRSGILQVASDELYEE 307          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A496VW41_9GAMM (NUDIX hydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496VW41_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 4.680e-9
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 VCPYYVPPGAQGPEDCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAAS-ELHEE 183
            V PY+  P    P   E+VLIKEFRSPA+T D F+HELPGGS FK     ++ AS ELHEE
Sbjct:  250 VVPYWKHP--TDPLQSEIVLIKEFRSPARTADGFVHELPGGSNFKTGNDQLQLASDELHEE 308          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A0G1AVP6_9BACT (Uncharacterized protein n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A0G1AVP6_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 8.740e-9
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   55 VVLIKEFRSPAKTDDCFIHELPGGSAFKAQ-EPVVEAASELHEE 183
            +VL+KEFRSP +T D FIHELPGGSAFK   EP++ AA E+ EE
Sbjct:  255 IVLVKEFRSPGRTSDGFIHELPGGSAFKNNVEPIILAAEEIFEE 298          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: UPI001F2566FB (hypothetical protein n=1 Tax=Amycolatopsis sp. GM8 TaxID=2896530 RepID=UPI001F2566FB)

HSP 1 Score: 58.2 bits (139), Expect = 2.240e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   46 DCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 183
            D EVV+++EFRSPA T D F+ ELPGGS FK   P+ +A +EL EE
Sbjct:  254 DTEVVIVREFRSPATTADGFVRELPGGSGFKPASPIEQAVAELAEE 299          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: UPI001E3EFF15 (NUDIX domain-containing protein n=1 Tax=Streptomyces kaniharaensis TaxID=212423 RepID=UPI001E3EFF15)

HSP 1 Score: 55.8 bits (133), Expect = 3.900e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   46 DCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 183
            D E+VL++EFRSPA+T D +I E+PGGS+ K  +P V AA+E  EE
Sbjct:   20 DTEIVLVREFRSPARTPDAYIREVPGGSSAKPGDPRVTAATEFTEE 65          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A3D0YSH6_9BACT (NUDIX hydrolase n=1 Tax=Candidatus Falkowbacteria bacterium TaxID=2053554 RepID=A0A3D0YSH6_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.070e-7
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   46 DCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQE-PVVEAASELHEE 183
            D +VVLI+EFRSPA TDD FI E+PGGS++K  E P V AA EL EE
Sbjct:  249 DSQVVLIREFRSPATTDDGFIREVPGGSSWKPGENPFVTAAHELAEE 295          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A6N7L3M4_9ACTN (NUDIX hydrolase n=1 Tax=Streptomyces kaniharaensis TaxID=212423 RepID=A0A6N7L3M4_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.470e-7
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   46 DCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEPVVEAASELHEE 183
            D E+VL++EFRSPA+T D +I E+PGGS+ K  +P V AA+E  EE
Sbjct:  249 DTEIVLVREFRSPARTPDAYIREVPGGSSAKPGDPRVTAATEFTEE 294          
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Match: A0A6J5RX26_9CAUD (Nucleoside 2-deoxyribosyltransferase like n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5RX26_9CAUD)

HSP 1 Score: 55.8 bits (133), Expect = 1.470e-7
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   43 EDCEVVLIKEFRSPAKTDDCFIHELPGGSA-FKAQEPVVEAASELHEE 183
            E+ EVV+IKEFRSPA+T+D FI EL GGS+  K  +P+  AA E+HEE
Sbjct:  260 ENSEVVIIKEFRSPARTEDGFIRELAGGSSPKKGSDPLETAAEEIHEE 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3USK8_HETAK3.850e-36100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A090AHW0_9GAMM4.200e-1158.33NUDIX hydrolase n=1 Tax=Thioploca ingrica TaxID=40... [more]
A0A496V7H5_9GAMM1.830e-965.22NUDIX hydrolase n=2 Tax=Gammaproteobacteria TaxID=... [more]
A0A496VW41_9GAMM4.680e-957.38NUDIX hydrolase n=1 Tax=Gammaproteobacteria bacter... [more]
A0A0G1AVP6_9BACT8.740e-965.91Uncharacterized protein n=2 Tax=Parcubacteria grou... [more]
UPI001F2566FB2.240e-858.70hypothetical protein n=1 Tax=Amycolatopsis sp. GM8... [more]
UPI001E3EFF153.900e-856.52NUDIX domain-containing protein n=1 Tax=Streptomyc... [more]
A0A3D0YSH6_9BACT1.070e-765.96NUDIX hydrolase n=1 Tax=Candidatus Falkowbacteria ... [more]
A0A6N7L3M4_9ACTN1.470e-756.52NUDIX hydrolase n=1 Tax=Streptomyces kaniharaensis... [more]
A0A6J5RX26_9CAUD1.470e-760.42Nucleoside 2-deoxyribosyltransferase like n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:1629481..1629664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121946.AUAX01000031_gene1016
PFAMsNuc_deoxyri_tr2
Model size185
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.53e-07
EggNOG OGs2DVN6@1|root,33WG4@2|Bacteria,2IJCQ@201174|Actinobacteria,4DK24@85008|Micromonosporales
DescriptionNucleoside 2-deoxyribosyltransferase like
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.3819578-CDS-H-akashiwo_Contig81:1629480..16296631681387994.3819578-CDS-H-akashiwo_Contig81:1629480..1629663Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1629481..1629663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.41.1prot_H-akashiwo_Contig81.41.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 1629481..1629663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.41.1

>prot_H-akashiwo_Contig81.41.1 ID=prot_H-akashiwo_Contig81.41.1|Name=mRNA_H-akashiwo_Contig81.41.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
SVCPYYVPPGAQGPEDCEVVLIKEFRSPAKTDDCFIHELPGGSAFKAQEP
VVEAASELHEE
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mRNA from alignment at H-akashiwo_Contig81:1629481..1629664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.41.1 ID=mRNA_H-akashiwo_Contig81.41.1|Name=mRNA_H-akashiwo_Contig81.41.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=184bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1629481..1629664+ (Heterosigma akashiwo CCMP452)
TCTGTGTGCCCATATTACGTCCCTCCTGGAGCACAGGGCCCCGAAGACTG TGAGGTTGTGCTGATCAAAGAGTTTCGGTCCCCGGCCAAAACGGACGACT GCTTCATCCACGAGCTGCCGGGGGGCTCGGCCTTCAAAGCGCAGGAGCCC GTGGTGGAGGCCGCCAGCGAGCTGCACGAGGAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig81:1629481..1629664+

>mRNA_H-akashiwo_Contig81.41.1 ID=mRNA_H-akashiwo_Contig81.41.1|Name=mRNA_H-akashiwo_Contig81.41.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1629481..1629664+ (Heterosigma akashiwo CCMP452)
TCTGTGTGCCCATATTACGTCCCTCCTGGAGCACAGGGCCCCGAAGACTG
TGAGGTTGTGCTGATCAAAGAGTTTCGGTCCCCGGCCAAAACGGACGACT
GCTTCATCCACGAGCTGCCGGGGGGCTCGGCCTTCAAAGCGCAGGAGCCC
GTGGTGGAGGCCGCCAGCGAGCTGCACGAGGAG
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