mRNA_H-akashiwo_Contig1213.2.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 464 bits (1194), Expect = 1.060e-164 Identity = 225/236 (95.34%), Postives = 232/236 (98.31%), Query Frame = 1
Query: 1 LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPEL 708
+D+QQT+SPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGA+TDDVYVRQPP YV+PQHPNKVWKLNKALYGLKQSPRVWYMELHDHL SLGF RSGHESCLY+HRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHL QTSFIKDALAKFGLDYLPACKTP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPEL
Sbjct: 4 IDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPEL 239
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 303 bits (776), Expect = 7.760e-100 Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1
Query: 250 MELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPEL 708
MELHDHL SLGF RSGHESCLY+HRDGGNELMVAVYVDDLVISGSSQA+VSEFKQSLASKY+LTDQGELTQILGIKVVRDKRNKCFHL QTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPEL
Sbjct: 1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPEL 153
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK) HSP 1 Score: 283 bits (724), Expect = 3.150e-91 Identity = 133/217 (61.29%), Postives = 170/217 (78.34%), Query Frame = 1
Query: 4 DYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDG--GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDAN 648
D+ T+SPV+ A SLRL+L+I+ANKG+AV++LDISTAFLN I DVYV+QPPG+V+ HP+KVWKL KALYGL+QSPR+WY LH+ L+ F RS +ESCLY ++ G + MVAVYVDDLV+S + ++VS K S S++++TD G LT ILGIKV RD NKCF+L Q SF++DA++KFGLDYLPAC+TP+ + DLTPTPGFKA L DAN
Sbjct: 193 DFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK) HSP 1 Score: 204 bits (519), Expect = 3.420e-60 Identity = 99/167 (59.28%), Postives = 127/167 (76.05%), Query Frame = 1
Query: 4 DYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDG--GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRN 498
D+ T+SPVV A SLRL+L+I+ANKG+AV++LDISTAFLN I DVYV+QPPG+V+ HP+KVWKL KALYGL+QSPR+WY LH+ L+ F RS +ESCLY ++ G + MVAVYVDDLV+S + ++VS K S S++++TD G LT ILGIKV RD N
Sbjct: 264 DFSATYSPVVAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTN 430
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM) HSP 1 Score: 194 bits (492), Expect = 1.120e-55 Identity = 96/240 (40.00%), Postives = 152/240 (63.33%), Query Frame = 1
Query: 1 LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTP---GFKAELSDANL-YRSMVGTLAWVANWTRPEL 708
+DY +TF+PV S+R++L+++A G + +D+ TAFLNG + +D+Y+ QP GYV+ HP+ V KL ++LYGLKQSPR+W + D ++ LGF + + C+Y+ RDG + + VA+YVDDLV++ SS ++ + KQ+L+ ++ +TD G+L LG+++ +D + QT F KD L KF +D KTP D + LT G K + + N+ YR+ VG L ++ TRP+L
Sbjct: 102 IDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGHDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDL 341
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: H3GB73_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB73_PHYRM) HSP 1 Score: 191 bits (484), Expect = 1.690e-55 Identity = 93/240 (38.75%), Postives = 151/240 (62.92%), Query Frame = 1
Query: 1 LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTP---GFKAELSDANL-YRSMVGTLAWVANWTRPEL 708
+DY +TF+PV S+R++L+++A G + +D+ TAFL+G + +D+Y+ QP GYVN HP+ V KL ++LYGLKQSPR+W + D ++ LGF + + C+Y+ RDG + + VA+Y++D V++ SS I+ + KQ+L+ ++ +TD G+L LG+++ +D + QT F KD + KF +D KTP D + LT G K + + N+ YR+ VG L ++ TRP+L
Sbjct: 72 IDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLDGVLDEDIYMAQPDGYVNEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGQDMIFVALYINDFVLASSSDKILLDTKQALSKRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDIMQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDL 311
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 199 bits (507), Expect = 3.210e-55 Identity = 102/239 (42.68%), Postives = 157/239 (65.69%), Query Frame = 1
Query: 4 DYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLY--VHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPEL 708
DY TFSPVV++ASLR +L I+A++ + +DI TAFL+G + +D+Y++QP GY P +KV KL K+LYGLKQ+P+ WY L+ L+ G+TR+G++SC+Y V GG L ++VYVDD+V++ S ++ +S K++++ YN++D GE+ ILGIKV RD+ + L Q SFI++A KF + P++ +D+ LS +A +RS+VGT+ W+A WT PE+
Sbjct: 563 DYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTL-ISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEV 800
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM) HSP 1 Score: 191 bits (486), Expect = 1.380e-54 Identity = 95/240 (39.58%), Postives = 150/240 (62.50%), Query Frame = 1
Query: 1 LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTP---GFKAELSDANL-YRSMVGTLAWVANWTRPEL 708
+DY +TF+PV S+R++L+++A G + +D+ TAFLNG + +D+Y+ QP GYV+ HP+ V KL ++LYGLKQSPR+W + D ++ LGF + + C+Y+ RDG + + VA+YVDDLV++ S+ ++ K +L+ ++ +TD GEL LG+++ +D + QT F KD L KF +D KTP D + LT G K + + N+ YR+ VG L ++ TRP+L
Sbjct: 239 IDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDL 478
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 185 bits (470), Expect = 2.310e-54 Identity = 91/232 (39.22%), Postives = 147/232 (63.36%), Query Frame = 1
Query: 1 LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTP---GFKAELSDANL-YRSMVGTLAWV 684
+DY +TF+PV S+R++L+++A G + +D+ TAFLNG + +D+Y+ QP GYV+ HP+ V KL ++LYGLKQSPR+W + D ++ LGF + + C+Y+ RDG + + VA+YVDDLV++ S+ ++ K +L+ ++ +TD GEL LG+++ D+ + + QT F+K L KFG+ KTP D + LT + G + E + N+ YRS VG L ++
Sbjct: 63 IDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKSMCEGGCQHEDTMKNVPYRSAVGALMYL 294
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM) HSP 1 Score: 194 bits (492), Expect = 3.020e-53 Identity = 96/240 (40.00%), Postives = 152/240 (63.33%), Query Frame = 1
Query: 1 LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVRQPPGYVNPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLVSLGFTRSGHESCLYVHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLPQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTP---GFKAELSDANL-YRSMVGTLAWVANWTRPEL 708
+DY +TF+PV S+R++L+++A G + +D+ TAFLNG + +D+Y+ QP GYV+ HP+ V KL ++LYGLKQSPR+W + D ++ LGF + + C+Y+ RDG + + VA+YVDDLV++ SS ++ + KQ+L+ ++ +TD G+L LG+++ +D + QT F KD L KF +D KTP D + LT G K + + N+ YR+ VG L ++ TRP+L
Sbjct: 496 IDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDL 735 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1213.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1213.2.1 >prot_H-akashiwo_Contig1213.2.1 ID=prot_H-akashiwo_Contig1213.2.1|Name=mRNA_H-akashiwo_Contig1213.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=236bp LDYQQTFSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAITDDVYVback to top mRNA from alignment at H-akashiwo_Contig1213:72816..73523+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1213.2.1 ID=mRNA_H-akashiwo_Contig1213.2.1|Name=mRNA_H-akashiwo_Contig1213.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=708bp|location=Sequence derived from alignment at H-akashiwo_Contig1213:72816..73523+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1213:72816..73523+ >mRNA_H-akashiwo_Contig1213.2.1 ID=mRNA_H-akashiwo_Contig1213.2.1|Name=mRNA_H-akashiwo_Contig1213.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=708bp|location=Sequence derived from alignment at H-akashiwo_Contig1213:72816..73523+ (Heterosigma akashiwo CCMP452)back to top |