mRNA_H-akashiwo_Contig797.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig797.7.1
Unique NamemRNA_H-akashiwo_Contig797.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: A0A7S4D527_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D527_HETAK)

HSP 1 Score: 124 bits (311), Expect = 5.610e-34
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    1 GPLPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGL 159
            GPLPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGL
Sbjct:   47 GPLPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGL 99          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: D6MKI6_9ASPA (Transcription factor (Fragment) n=1 Tax=Lycoris longituba TaxID=272140 RepID=D6MKI6_9ASPA)

HSP 1 Score: 66.2 bits (160), Expect = 4.030e-12
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRPGEQGCYLFQQSG 207
            LP  P   +C++YM  G C++G+ CKY HP E   E     +  TLGP GLPLRPG   C  +   G
Sbjct:   85 LPERPDQPECQYYMKTGSCKYGTNCKYHHPKESYTE-----SPFTLGPLGLPLRPGHAICTFYTMYG 146          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: A0A4P1RMT6_LUPAN (Uncharacterized protein n=3 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RMT6_LUPAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.240e-11
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRPGEQGCY 189
            LP  P   +C++YM  G+C+FGS C+Y HPP++    +A  A  TL P GLPLRP  +  Y
Sbjct:  307 LPERPDQPECQYYMRTGECKFGSSCRYHHPPDM----SASKATVTLSPAGLPLRPERRSLY 363          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: A0A7S3XQZ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQZ8_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 2.940e-11
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTL 144
            LP++PG E C FY+ NGKC++G  CK+DHP  +L+EI  K++ T L
Sbjct:  246 LPLHPGQEPCTFYVQNGKCKYGVACKFDHPVAILEEIKTKVSATVL 291          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: A0A059B4D7_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059B4D7_EUCGR)

HSP 1 Score: 66.6 bits (161), Expect = 3.260e-11
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRPGEQGCYLF 195
             PV PG  +C+ Y+  G CR+GS CKY HPP+     NA   +  L P GLP++PG   C  F
Sbjct:  313 FPVRPGQPECQHYLKTGDCRYGSSCKYHHPPDW----NALNVNIVLSPTGLPIQPGAPPCMHF 371          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: UPI0011D2AC1F (zinc finger CCCH domain-containing protein 58-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2AC1F)

HSP 1 Score: 66.6 bits (161), Expect = 3.260e-11
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRPGEQGCYLF 195
             P  PG  +C+ YM  G C++GS CKY HPP+    +NA   +  L P GLP RPG   C  F
Sbjct:  309 FPERPGQPECQHYMKTGDCKYGSSCKYHHPPD----LNALNVNFVLSPTGLPFRPGAPPCMHF 367          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: UPI00192ED5DB (zinc finger CCCH domain-containing protein 34 isoform X1 n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192ED5DB)

HSP 1 Score: 66.6 bits (161), Expect = 3.300e-11
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRPGEQGCYLF 195
             PV PG  +C+ Y+  G CR+GS CKY HPP+     NA   +  L P GLP++PG   C  F
Sbjct:  489 FPVRPGQPECQHYLKTGDCRYGSSCKYHHPPDW----NALNVNIVLSPTGLPIQPGAPPCMHF 547          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: A0A6A2YPC4_HIBSY (Zinc finger CCCH domain-containing protein 34 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YPC4_HIBSY)

HSP 1 Score: 65.5 bits (158), Expect = 7.120e-11
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRPGEQ 180
             P  PG  +C++YM  G+C++GS C+Y HPPEV     A      L P GLPLRP EQ
Sbjct:  286 FPERPGQPECQYYMKTGRCKYGSSCRYHHPPEVF----APKKDVILSPLGLPLRPIEQ 339          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: A0A2K1L7Z1_PHYPA (Uncharacterized protein n=8 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L7Z1_PHYPA)

HSP 1 Score: 65.5 bits (158), Expect = 8.430e-11
Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAH------------TTLGPHGLPLRPGEQGCYLFQQSG 207
            LP  P    C ++M  G+CR+GSKC+++HP E L+  N                 TT    GLPLRPGE  C  + ++G
Sbjct:  150 LPQRPTEPDCAYFMKTGECRYGSKCRFNHPKEKLESSNTDEQSSVVNQAAPINPATTFNSKGLPLRPGEGNCVFYGKTG 228          
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Match: UPI00092F9318 (zinc finger CCCH domain-containing protein 34-like isoform X3 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F9318)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-10
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    7 LPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGPHGLPLRP 171
            LP  P   +C++YM  G+C+FGS C+Y HPP++    +A  A  TL P GLPLRP
Sbjct:  307 LPERPDQPECQYYMRTGECKFGSSCRYHHPPDM----SASKATVTLSPAGLPLRP 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig797.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D527_HETAK5.610e-34100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D6MKI6_9ASPA4.030e-1243.28Transcription factor (Fragment) n=1 Tax=Lycoris lo... [more]
A0A4P1RMT6_LUPAN2.240e-1145.90Uncharacterized protein n=3 Tax=Lupinus angustifol... [more]
A0A7S3XQZ8_HETAK2.940e-1152.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A059B4D7_EUCGR3.260e-1144.44Uncharacterized protein n=1 Tax=Eucalyptus grandis... [more]
UPI0011D2AC1F3.260e-1144.44zinc finger CCCH domain-containing protein 58-like... [more]
UPI00192ED5DB3.300e-1144.44zinc finger CCCH domain-containing protein 34 isof... [more]
A0A6A2YPC4_HIBSY7.120e-1148.28Zinc finger CCCH domain-containing protein 34 n=1 ... [more]
A0A2K1L7Z1_PHYPA8.430e-1136.71Uncharacterized protein n=8 Tax=Physcomitrium pate... [more]
UPI00092F93181.410e-1049.09zinc finger CCCH domain-containing protein 34-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig797contigH-akashiwo_Contig797:261084..261493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog71139.XP_010024647.1
PFAMszf-CCCH
Model size208
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Exons2
Evalue5.34e-12
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota,37RPU@33090|Viridiplantae,3G783@35493|Streptophyta
Descriptionzinc finger CCCH domain-containing protein
Cds size207
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387979.546298-CDS-H-akashiwo_Contig797:261083..2612091681387979.546298-CDS-H-akashiwo_Contig797:261083..261209Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig797 261084..261209 +
1681387979.5575929-CDS-H-akashiwo_Contig797:261412..2614931681387979.5575929-CDS-H-akashiwo_Contig797:261412..261493Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig797 261413..261493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig797.7.1prot_H-akashiwo_Contig797.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig797 261084..261493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig797.7.1

>prot_H-akashiwo_Contig797.7.1 ID=prot_H-akashiwo_Contig797.7.1|Name=mRNA_H-akashiwo_Contig797.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
GPLPVNPGAEKCKFYMDNGKCRFGSKCKYDHPPEVLQEINAKLAHTTLGP
HGLPLRPGEQGCYLFQQSG
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mRNA from alignment at H-akashiwo_Contig797:261084..261493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig797.7.1 ID=mRNA_H-akashiwo_Contig797.7.1|Name=mRNA_H-akashiwo_Contig797.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=410bp|location=Sequence derived from alignment at H-akashiwo_Contig797:261084..261493+ (Heterosigma akashiwo CCMP452)
GGGCCTTTGCCCGTAAACCCAGGCGCAGAGAAATGTAAATTCTACATGGA CAATGGAAAGTGTCGGTTCGGCAGCAAGTGCAAGTACGACCATCCCCCAG AAGTGCTCCAGGAAATCAATGCCAAGGTAGGAACGCATCGCCTGTTCCAG ATCCTGCGCCTCGTTCTGGATAGCACCACTACTAGTAATATATTGCATGA GTGTTATTATAAGTATCCACAAGACTGCATCTGGCTTGTCAAGTGGACCT GTGACGTGAGAATGCAGAGAAATCGATTGCCCCCTCGGCCTGCTGCCGCC GCCGCCGCCGCCCCGCCGGGGGCGCGCAGCTGGCGCACACGACGCTGGGC CCCCACGGGCTGCCCCTCCGCCCGGGCGAGCAGGGCTGCTACCTCTTCCA GCAGTCCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig797:261084..261493+

>mRNA_H-akashiwo_Contig797.7.1 ID=mRNA_H-akashiwo_Contig797.7.1|Name=mRNA_H-akashiwo_Contig797.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig797:261084..261493+ (Heterosigma akashiwo CCMP452)
GGGCCTTTGCCCGTAAACCCAGGCGCAGAGAAATGTAAATTCTACATGGA
CAATGGAAAGTGTCGGTTCGGCAGCAAGTGCAAGTACGACCATCCCCCAG
AAGTGCTCCAGGAAATCAATGCCAAGCTGGCGCACACGACGCTGGGCCCC
CACGGGCTGCCCCTCCGCCCGGGCGAGCAGGGCTGCTACCTCTTCCAGCA
GTCCGGC
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