mRNA_H-akashiwo_Contig1112.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1112.5.1
Unique NamemRNA_H-akashiwo_Contig1112.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A7S1UJY0_9STRA (Protein yippee-like n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJY0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.170e-53
Identity = 76/113 (67.26%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNWS 339
            MGRIF+RYL+ P+IY C  CGTH+S+N QIISR+FHGRGGRA+LF+TA+N++ GPPE+R L+TG+H+V DIYCI CQ L+GW YE+AFE +QKYK GKFILEKTK+ +   WS
Sbjct:    1 MGRIFRRYLEGPKIYCCEGCGTHLSTNDQIISRAFHGRGGRAFLFNTAINVSTGPPERRMLITGMHVVADIYCIQCQALIGWTYEQAFEPTQKYKEGKFILEKTKISKVE-WS 112          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A7S2SVP3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVP3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 6.180e-51
Identity = 73/113 (64.60%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNWS 339
            MGR+ + +L+ P+I+ C++C TH+S+N +IIS++FHGRGGRAYLFDTA+N++ GP E+R L+TGLHIVCD+YCI C +++GWKYEEAFEESQKYKVGKFILEK KL +  +W+
Sbjct:   30 MGRLHRVHLEGPDIFVCVECRTHLSTNDKIISKAFHGRGGRAYLFDTAVNVSTGPLEKRVLITGLHIVCDLYCISCGSVVGWKYEEAFEESQKYKVGKFILEKPKLAK-EDWA 141          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A835Z468_9STRA (Protein yippee-like n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z468_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.540e-50
Identity = 70/106 (66.04%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKL 318
            MGRIFKRYL+ P+IY+C++CGTH ++   IIS +FHGRGGRA+LF+ A+N+T GP E+R L+TG+H V DIYC+ CQ+L+GW+YE AFEESQKYK GKFILEKT++
Sbjct:    1 MGRIFKRYLEGPQIYSCLECGTHFTTKQDIISENFHGRGGRAFLFNQAVNVTQGPLEKRMLITGMHTVADIYCVDCQSLVGWRYERAFEESQKYKEGKFILEKTRM 106          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A7R9U7K2_9STRA (Protein yippee-like n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7K2_9STRA)

HSP 1 Score: 163 bits (412), Expect = 6.460e-50
Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNWS 339
            MGRIF+RYL+ P+IY C  CGTH+S+N QIISR F GRGG+AYLF+ A+N+  GP E+R L+TGLH+V DIYCI C++L+GW YEEAF+ SQKYK GKFILEKTK+ + + WS
Sbjct:    1 MGRIFRRYLEGPKIYCCSTCGTHLSTNDQIISRRFRGRGGQAYLFNRAVNVMTGPSERRVLITGLHVVADIYCIQCESLIGWTYEEAFDRSQKYKEGKFILEKTKITK-SEWS 112          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A5B8MU59_9CHLO (Protein yippee-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MU59_9CHLO)

HSP 1 Score: 155 bits (393), Expect = 4.210e-47
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNW 336
            MGR+FK+YL+ P IY+C +C  H S + +I+S++F GR GRAYLF+  +N+T GP E R L+TGLH V DIYC CCQ +LGWKYE+AFEESQKYK GK+I+EK K+ +  +W
Sbjct:    1 MGRLFKQYLNGPRIYSCSNCRCHTSDHDEIVSKAFQGRHGRAYLFNNVVNVTLGPKEDRLLITGLHTVADIYCSCCQQVLGWKYEQAFEESQKYKEGKYIIEKAKMVKEGSW 112          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A7S0WSD2_9CHLO (Protein yippee-like n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSD2_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 2.430e-46
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNW 336
            MGR+FK+YL  P IY+C +C TH + + +IIS+SF GR GRA+LF   +N+T GP E R L+TGLH V DIYC CCQ +LGWKYE+AFEE+QKYK GKFI+EK K+ +   W
Sbjct:    1 MGRLFKQYLSGPRIYSCSNCRTHSADHDEIISKSFQGRHGRAFLFSNVVNVTLGPKEDRLLITGLHTVADIYCSCCQAVLGWKYEQAFEENQKYKEGKFIVEKAKMMKEGTW 112          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: E1ZGW0_CHLVA (Protein yippee-like n=3 Tax=Chlorella clade TaxID=2511126 RepID=E1ZGW0_CHLVA)

HSP 1 Score: 150 bits (380), Expect = 4.020e-45
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNW 336
            MG +FK+YL   +IYTC  C TH + +GQ+IS++F GR GRAYLF   +N+T GP E R L+TGLH VCD YCI C ++LGWKYE A+EESQKYK GK+ILEK K+ +  +W
Sbjct:    1 MGVLFKQYLSGDKIYTCSQCKTHCTDHGQLISKAFQGRHGRAYLFSDVVNVTLGPREDRMLITGLHTVCDCYCITCNSVLGWKYEVAYEESQKYKEGKYILEKAKVQKEGSW 112          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A2D4BE37_PYTIN (Protein yippee-like n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE37_PYTIN)

HSP 1 Score: 148 bits (374), Expect = 3.100e-44
Identity = 62/108 (57.41%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGR 324
            MGR+FK+YL+  ++++C +C TH+SS   I+S++FHGR G+AYLFD  +N+T GPPE+R L+TGLH+V D+YC  C N LGWKYEEA EE +KYK+GK +LE  K  R
Sbjct:    1 MGRVFKQYLESSKVFSCRECKTHLSSADAIVSKTFHGRTGKAYLFDKCVNITTGPPEERMLMTGLHVVVDVYCNTCWNHLGWKYEEAHEEKEKYKIGKIVLELAKTNR 108          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A6A5BX87_NAEFO (Protein yippee-like n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BX87_NAEFO)

HSP 1 Score: 148 bits (373), Expect = 4.980e-44
Identity = 62/112 (55.36%), Postives = 89/112 (79.46%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNW 336
            MGR++ +YL+   IY C +C +H+S N +IIS+ FHGR G+AYLF+ A+N+T GP E+R L+TGLH+VCDIYC+ C+  +GWKY++A+E S++YKVGKF+LEK KL + N +
Sbjct:    1 MGRLYLKYLNGSSIYVCSNCNSHLSMNDEIISKHFHGRFGKAYLFNKAINVTTGPCEERQLMTGLHVVCDIYCVNCKANVGWKYKKAYESSEQYKVGKFVLEKAKLKKENTF 112          
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Match: A0A1Y1IRS2_KLENI (Protein yippee-like n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRS2_KLENI)

HSP 1 Score: 149 bits (375), Expect = 6.230e-44
Identity = 64/112 (57.14%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMNLTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFILEKTKLGRYNNW 336
            MGRIF++YL+ P IY+C +C  H + + +IIS+ F GR GRAYLF++ +N+T GP E R+L TGLH V DIYC CCQ +LGWKYE+A++ESQKYK GK+I+EK ++ +  NW
Sbjct:   34 MGRIFRQYLNGPRIYSCSNCRCHSADHDEIISKQFQGRYGRAYLFNSVVNVTLGPKEDRHLTTGLHTVADIYCSCCQQILGWKYEQAYDESQKYKEGKYIIEKARMMK-ENW 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1112.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UJY0_9STRA6.170e-5367.26Protein yippee-like n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7S2SVP3_9STRA6.180e-5164.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z468_9STRA3.540e-5066.04Protein yippee-like n=1 Tax=Tribonema minus TaxID=... [more]
A0A7R9U7K2_9STRA6.460e-5065.49Protein yippee-like n=1 Tax=Pinguiococcus pyrenoid... [more]
A0A5B8MU59_9CHLO4.210e-4758.93Protein yippee-like n=1 Tax=Chloropicon primus Tax... [more]
A0A7S0WSD2_9CHLO2.430e-4659.82Protein yippee-like n=1 Tax=Pyramimonas obovata Ta... [more]
E1ZGW0_CHLVA4.020e-4558.93Protein yippee-like n=3 Tax=Chlorella clade TaxID=... [more]
A0A2D4BE37_PYTIN3.100e-4457.41Protein yippee-like n=1 Tax=Pythium insidiosum Tax... [more]
A0A6A5BX87_NAEFO4.980e-4455.36Protein yippee-like n=2 Tax=Naegleria TaxID=5761 R... [more]
A0A1Y1IRS2_KLENI6.230e-4457.14Protein yippee-like n=1 Tax=Klebsormidium nitens T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1112contigH-akashiwo_Contig1112:142489..142830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog554065.XP_005847110.1
PFAMsYippee-Mis18
Model size342
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.59e-46
EggNOG OGsKOG3399@1|root,KOG3399@2759|Eukaryota,3840B@33090|Viridiplantae,34M5W@3041|Chlorophyta
DescriptionBelongs to the yippee family
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.8254228-CDS-H-akashiwo_Contig1112:142488..1428301681387085.8254228-CDS-H-akashiwo_Contig1112:142488..142830Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1112 142489..142830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1112.5.1prot_H-akashiwo_Contig1112.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1112 142489..142830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1112.5.1

>prot_H-akashiwo_Contig1112.5.1 ID=prot_H-akashiwo_Contig1112.5.1|Name=mRNA_H-akashiwo_Contig1112.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
MGRIFKRYLDCPEIYTCIDCGTHVSSNGQIISRSFHGRGGRAYLFDTAMN
LTYGPPEQRNLLTGLHIVCDIYCICCQNLLGWKYEEAFEESQKYKVGKFI
LEKTKLGRYNNWS*
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mRNA from alignment at H-akashiwo_Contig1112:142489..142830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1112.5.1 ID=mRNA_H-akashiwo_Contig1112.5.1|Name=mRNA_H-akashiwo_Contig1112.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1112:142489..142830- (Heterosigma akashiwo CCMP452)
ATGGGTAGAATCTTTAAGCGTTATTTGGACTGCCCTGAAATATACACGTG TATTGACTGCGGGACACACGTTTCTTCAAACGGGCAAATTATTTCGCGCT CATTTCATGGACGAGGAGGGAGAGCTTATCTTTTTGATACAGCAATGAAC TTAACCTACGGCCCACCTGAACAAAGGAACCTCTTAACTGGGCTCCATAT CGTGTGTGACATATACTGCATATGCTGCCAAAATCTTCTGGGTTGGAAAT ACGAGGAGGCGTTTGAGGAGAGCCAAAAGTACAAAGTGGGGAAGTTTATA CTGGAAAAAACAAAGCTGGGTAGATACAACAATTGGTCTTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1112:142489..142830-

>mRNA_H-akashiwo_Contig1112.5.1 ID=mRNA_H-akashiwo_Contig1112.5.1|Name=mRNA_H-akashiwo_Contig1112.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1112:142489..142830- (Heterosigma akashiwo CCMP452)
ATGGGTAGAATCTTTAAGCGTTATTTGGACTGCCCTGAAATATACACGTG
TATTGACTGCGGGACACACGTTTCTTCAAACGGGCAAATTATTTCGCGCT
CATTTCATGGACGAGGAGGGAGAGCTTATCTTTTTGATACAGCAATGAAC
TTAACCTACGGCCCACCTGAACAAAGGAACCTCTTAACTGGGCTCCATAT
CGTGTGTGACATATACTGCATATGCTGCCAAAATCTTCTGGGTTGGAAAT
ACGAGGAGGCGTTTGAGGAGAGCCAAAAGTACAAAGTGGGGAAGTTTATA
CTGGAAAAAACAAAGCTGGGTAGATACAACAATTGGTCTTAG
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