prot_H-akashiwo_Contig93.8.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig93.8.1
Unique Nameprot_H-akashiwo_Contig93.8.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length103
Homology
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A1V5K129_9BACT (Cold shock protein CspB n=1 Tax=Candidatus Aminicenantes bacterium ADurb.Bin508 TaxID=1852832 RepID=A0A1V5K129_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-16
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0
Query:   28 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSL 90
            G VKW+D KKG+GFI   D KDYFVHYTSI  DGFR LEE   V+F+  E+  G  KAVNV++
Sbjct:    4 GKVKWFDTKKGYGFIQSEDGKDYFVHYTSIMGDGFRNLEEGQSVTFEITEDTKGP-KAVNVTV 65          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A058ZFV8_FONAL (CSD domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZFV8_FONAL)

HSP 1 Score: 78.6 bits (192), Expect = 1.360e-16
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   23 RSFATGSVKWYDRKKGFGFILGA-DEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPI 96
            R +ATG+VKW++  +GFGFI    D+K+YFVH TSINM GFR L E   V FD  E   G   A N+S PDG P+
Sbjct:   20 RGYATGTVKWFNMTRGFGFITNEEDDKEYFVHQTSINMIGFRGLIEGERVQFDITENDKGPF-ATNISAPDGRPL 93          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7S3BX20_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BX20_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 1.380e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 0
Query:   27 TGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPG 98
            +G+VKW+D +KG+GFI+  D  KD FVH   I+  GFR L+++  V FD +E+ DGK+KAVNV+ PDG  + G
Sbjct:   20 SGAVKWFDTEKGYGFIIPDDGSKDVFVHQMQIHAPGFRSLDKDEPVEFDLEEQQDGKIKAVNVTGPDGEYVKG 92          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: H2J320_MARPK (Cold shock protein n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) TaxID=443254 RepID=H2J320_MARPK)

HSP 1 Score: 76.6 bits (187), Expect = 1.620e-16
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   28 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNV 88
            G VKW+D KKGFGFI G D  D FVH+T+I MDGF+ LEE  EV ++ +E A G ++AVNV
Sbjct:    3 GKVKWFDAKKGFGFISGEDGNDVFVHFTAITMDGFKTLEEEQEVEYEIQENAKG-LQAVNV 62          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: H2J321_MARPK (Cold shock protein n=3 Tax=Marinitoga TaxID=160798 RepID=H2J321_MARPK)

HSP 1 Score: 75.9 bits (185), Expect = 3.260e-16
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   28 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNV 88
            G VKW+D KKG+GFI G D KD FVH+T+I MDGF+ LEE  EV ++ +E   G ++AVNV
Sbjct:    3 GKVKWFDAKKGYGFISGEDGKDVFVHFTAITMDGFKTLEEGQEVEYEVQENEKG-LQAVNV 62          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7S1E601_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E601_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.790e-16
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 0
Query:   23 RSFATGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR 102
            RS  TG VKW+D KKGFGFI+  D   D FVHY+ +N +GF+ L +  +V FD     DG++KA NV+ PDG+ + G + R
Sbjct:   46 RSGMTGVVKWFDAKKGFGFIVPDDGSSDVFVHYSVVNGNGFKSLADGEQVEFDIISSDDGRIKATNVTGPDGTTVQGAARR 126          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7S1SU53_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SU53_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 5.710e-16
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   26 ATGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPG 98
            +TG VKW++ +KGFGFI   D ++D FVH +SI+  GFR L+EN +V +D ++  DG++KAVNV+ P+G  + G
Sbjct:    8 STGKVKWFNSQKGFGFITPDDGQEDIFVHQSSIHSQGFRSLDENEDVEYDLEQGNDGRLKAVNVTGPNGDYVKG 81          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A6P6RVZ6_9EIME (glycine-rich protein 2 n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RVZ6_9EIME)

HSP 1 Score: 78.2 bits (191), Expect = 5.830e-16
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:   28 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR 102
            G+ KW+D KKGFGFI   D  D FVH T I  DGFR L E  EV F  +   DG+ KAV V+ P G+P+ G + R
Sbjct:    7 GTCKWFDSKKGFGFITADDGTDLFVHQTEIKADGFRNLSEGEEVEFQVQAGEDGRKKAVRVTGPGGAPVKGDTRR 81          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A524L4F8_9DELT (Cold shock domain-containing protein n=1 Tax=Syntrophobacterales bacterium TaxID=2282155 RepID=A0A524L4F8_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 6.720e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 0
Query:   26 ATGSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLP 91
            A+G VKW++ KKGFGFI   D +D FVHY+SINMDGF+ L E  EV FD  EE D   +A NVS P
Sbjct:    2 ASGIVKWFNEKKGFGFIQQEDGQDLFVHYSSINMDGFKTLIEGDEVVFDV-EETDRGFQAKNVSRP 66          
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7R9ZID0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZID0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.770e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   26 ATGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPG 98
            +TGSVKW+D KKGFGFI+  D   D FVH++ I+ DGFR L +  +V FD  EEA+G+ +A  V+ PDG+ + G
Sbjct:   53 STGSVKWFDPKKGFGFIVPDDGSDDIFVHHSCIHADGFRSLADGEDVEFDIVEEANGRRRAEAVTGPDGAAVQG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V5K129_9BACT1.200e-1660.32Cold shock protein CspB n=1 Tax=Candidatus Aminice... [more]
A0A058ZFV8_FONAL1.360e-1653.33CSD domain-containing protein n=1 Tax=Fonticula al... [more]
A0A7S3BX20_9EUKA1.380e-1650.68Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
H2J320_MARPK1.620e-1659.02Cold shock protein n=1 Tax=Marinitoga piezophila (... [more]
H2J321_MARPK3.260e-1657.38Cold shock protein n=3 Tax=Marinitoga TaxID=160798... [more]
A0A7S1E601_9STRA3.790e-1648.15Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1SU53_9CHLO5.710e-1648.65Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A6P6RVZ6_9EIME5.830e-1650.67glycine-rich protein 2 n=1 Tax=Cyclospora cayetane... [more]
A0A524L4F8_9DELT6.720e-1659.09Cold shock domain-containing protein n=1 Tax=Syntr... [more]
A0A7R9ZID0_9STRA8.770e-1651.35Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 28..43
score: 57.09
coord: 48..57
score: 53.82
coord: 63..81
score: 33.47
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 27..90
e-value: 1.8E-20
score: 72.5
IPR002059Cold-shock protein, DNA-bindingPROSITEPS51857CSD_2coord: 25..90
score: 25.887815
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 27..90
e-value: 1.07908E-21
score: 78.7746
IPR011129Cold shock domainSMARTSM00357csp_8coord: 27..91
e-value: 9.0E-18
score: 75.0
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 23..99
e-value: 2.3E-22
score: 81.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 26..90
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 26..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:631034..634133 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.8.1mRNA_H-akashiwo_Contig93.8.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig93 630735..634212 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig93.8.1 ID=prot_H-akashiwo_Contig93.8.1|Name=mRNA_H-akashiwo_Contig93.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MAFLSSQCHLLKKVLSPGGFHFRSFATGSVKWYDRKKGFGFILGADEKDY
FVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYS
PR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR012340NA-bd_OB-fold