mRNA_H-akashiwo_Contig93.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.8.1
Unique NamemRNA_H-akashiwo_Contig93.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7S3BX20_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BX20_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 3.430e-15
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:  158 TGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR 385
            +G+VKW+D +KG+GFI+  D  KD FVH   I+  GFR L+++  V FD +E+ DGK+KAVNV+ PDG  + G +PR
Sbjct:   20 SGAVKWFDTEKGYGFIIPDDGSKDVFVHQMQIHAPGFRSLDKDEPVEFDLEEQQDGKIKAVNVTGPDGEYVKG-APR 95
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A058ZFV8_FONAL (CSD domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZFV8_FONAL)

HSP 1 Score: 78.6 bits (192), Expect = 4.800e-15
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  146 RSFATGSVKWYDRKKGFGFILGA-DEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSP---IPGYSPR 385
            R +ATG+VKW++  +GFGFI    D+K+YFVH TSINM GFR L E   V FD  E   G   A N+S PDG P   +PG   R
Sbjct:   20 RGYATGTVKWFNMTRGFGFITNEEDDKEYFVHQTSINMIGFRGLIEGERVQFDITENDKGPF-ATNISAPDGRPLHTVPGRELR 102
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A1V5K129_9BACT (Cold shock protein CspB n=1 Tax=Candidatus Aminicenantes bacterium ADurb.Bin508 TaxID=1852832 RepID=A0A1V5K129_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 5.670e-15
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  161 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSL 349
            G VKW+D KKG+GFI   D KDYFVHYTSI  DGFR LEE   V+F+  E+  G  KAVNV++
Sbjct:    4 GKVKWFDTKKGYGFIQSEDGKDYFVHYTSIMGDGFRNLEEGQSVTFEITEDTKGP-KAVNVTV 65
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: H2J320_MARPK (Cold shock protein n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) TaxID=443254 RepID=H2J320_MARPK)

HSP 1 Score: 76.3 bits (186), Expect = 7.560e-15
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  161 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNV 343
            G VKW+D KKGFGFI G D  D FVH+T+I MDGF+ LEE  EV ++ +E A G ++AVNV
Sbjct:    3 GKVKWFDAKKGFGFISGEDGNDVFVHFTAITMDGFKTLEEEQEVEYEIQENAKG-LQAVNV 62
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7S1E601_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E601_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.780e-15
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:  146 RSFATGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR 385
            RS  TG VKW+D KKGFGFI+  D   D FVHY+ +N +GF+ L +  +V FD     DG++KA NV+ PDG+ + G + R
Sbjct:   46 RSGMTGVVKWFDAKKGFGFIVPDDGSSDVFVHYSVVNGNGFKSLADGEQVEFDIISSDDGRIKATNVTGPDGTTVQGAARR 126
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7S1SU53_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SU53_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.400e-14
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 2 
Query:  155 ATGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR 385
            +TG VKW++ +KGFGFI   D ++D FVH +SI+  GFR L+EN +V +D ++  DG++KAVNV+ P+G  + G +PR
Sbjct:    8 STGKVKWFNSQKGFGFITPDDGQEDIFVHQSSIHSQGFRSLDENEDVEYDLEQGNDGRLKAVNVTGPNGDYVKG-APR 84
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BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A6P6RVZ6_9EIME (glycine-rich protein 2 n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RVZ6_9EIME)

HSP 1 Score: 78.6 bits (192), Expect = 1.470e-14
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2 
Query:  161 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR 385
            G+ KW+D KKGFGFI   D  D FVH T I  DGFR L E  EV F  +   DG+ KAV V+ P G+P+ G + R
Sbjct:    7 GTCKWFDSKKGFGFITADDGTDLFVHQTEIKADGFRNLSEGEEVEFQVQAGEDGRKKAVRVTGPGGAPVKGDTRR 81
[Close]
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: H2J321_MARPK (Cold shock protein n=3 Tax=Marinitoga TaxID=160798 RepID=H2J321_MARPK)

HSP 1 Score: 75.5 bits (184), Expect = 1.490e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  161 GSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNV 343
            G VKW+D KKG+GFI G D KD FVH+T+I MDGF+ LEE  EV ++ +E   G ++AVNV
Sbjct:    3 GKVKWFDAKKGYGFISGEDGKDVFVHFTAITMDGFKTLEEGQEVEYEVQENEKG-LQAVNV 62
[Close]
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A7R9ZID0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZID0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.570e-14
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2 
Query:  155 ATGSVKWYDRKKGFGFILGAD-EKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYSPR*VAE 397
            +TGSVKW+D KKGFGFI+  D   D FVH++ I+ DGFR L +  +V FD  EEA+G+ +A  V+ PDG+ + G +PR  A 
Sbjct:   53 STGSVKWFDPKKGFGFIVPDDGSDDIFVHHSCIHADGFRSLADGEDVEFDIVEEANGRRRAEAVTGPDGAAVQG-APRRFAN 133
[Close]
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Match: A0A524L4F8_9DELT (Cold shock domain-containing protein n=1 Tax=Syntrophobacterales bacterium TaxID=2282155 RepID=A0A524L4F8_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 3.000e-14
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:  155 ATGSVKWYDRKKGFGFILGADEKDYFVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLP 352
            A+G VKW++ KKGFGFI   D +D FVHY+SINMDGF+ L E  EV FD  EE D   +A NVS P
Sbjct:    2 ASGIVKWFNEKKGFGFIQQEDGQDLFVHYSSINMDGFKTLIEGDEVVFDV-EETDRGFQAKNVSRP 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3BX20_9EUKA3.430e-1550.65Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A058ZFV8_FONAL4.800e-1551.19CSD domain-containing protein n=1 Tax=Fonticula al... [more]
A0A1V5K129_9BACT5.670e-1560.32Cold shock protein CspB n=1 Tax=Candidatus Aminice... [more]
H2J320_MARPK7.560e-1559.02Cold shock protein n=1 Tax=Marinitoga piezophila (... [more]
A0A7S1E601_9STRA9.780e-1548.15Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1SU53_9CHLO1.400e-1448.72Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A6P6RVZ6_9EIME1.470e-1450.67glycine-rich protein 2 n=1 Tax=Cyclospora cayetane... [more]
H2J321_MARPK1.490e-1457.38Cold shock protein n=3 Tax=Marinitoga TaxID=160798... [more]
A0A7R9ZID0_9STRA1.570e-1450.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A524L4F8_9DELT3.000e-1459.09Cold shock domain-containing protein n=1 Tax=Syntr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:630735..634212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog443254.Marpi_1308
PFAMsCSD
Model size687
Max annot lvl200918|Thermotogae
KEGG koko:K03704
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.65e-17
EggNOG OGsCOG1278@1|root,COG1278@2|Bacteria,2GDFN@200918|Thermotogae
DescriptionPFAM Cold-shock protein, DNA-binding
Cds size309
COG categoryK
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.9480815-UTR-H-akashiwo_Contig93:630734..6310331681388046.9480815-UTR-H-akashiwo_Contig93:630734..631033Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 630735..631033 -
1681388046.992138-UTR-H-akashiwo_Contig93:634133..6342121681388046.992138-UTR-H-akashiwo_Contig93:634133..634212Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 634134..634212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.9605098-CDS-H-akashiwo_Contig93:631033..6311441681388046.9605098-CDS-H-akashiwo_Contig93:631033..631144Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 631034..631144 -
1681388046.9706306-CDS-H-akashiwo_Contig93:633771..6338331681388046.9706306-CDS-H-akashiwo_Contig93:633771..633833Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 633772..633833 -
1681388046.9810944-CDS-H-akashiwo_Contig93:633997..6341331681388046.9810944-CDS-H-akashiwo_Contig93:633997..634133Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 633998..634133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.8.1prot_H-akashiwo_Contig93.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 631034..634133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.8.1

>prot_H-akashiwo_Contig93.8.1 ID=prot_H-akashiwo_Contig93.8.1|Name=mRNA_H-akashiwo_Contig93.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MAFLSSQCHLLKKVLSPGGFHFRSFATGSVKWYDRKKGFGFILGADEKDY
FVHYTSINMDGFRFLEENLEVSFDTKEEADGKMKAVNVSLPDGSPIPGYS
PR*
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mRNA from alignment at H-akashiwo_Contig93:630735..634212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.8.1 ID=mRNA_H-akashiwo_Contig93.8.1|Name=mRNA_H-akashiwo_Contig93.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3478bp|location=Sequence derived from alignment at H-akashiwo_Contig93:630735..634212- (Heterosigma akashiwo CCMP452)
CCAGCGCATTGTTATTCTATACCCACTTAGTAAGTTGTTCACAACAACAG
GACTACTGTTGTAGTAAAGTTGTAGAAAAATGGCCTTTTTAAGCTCGCAA
TGCCATCTTCTGAAAAAGGTCCTGAGCCCAGGAGGCTTCCACTTTCGATC
TTTCGCTACAGGTTCCGTCAAGTGGTATGATAGGAAAAAAGGTTTTGGCT
TCATCTTAGGGGCAGGTACGCATCCTTTTCTATTTGTATTCATCAGCGCC
TTTTTTTTTTTTTTTTTTTTTTTTTAATTTTGAAATATTTTGAGCTCTGT
CTGATTGATCAAGCCAGAGTTTATTCAGACCACTTTGCCATCATATCTTG
TAACTGCTGTTGAATCTGACACCTGCCAGATGAGAAGGACTACTTTGTGC
ATTACACTTCAATAAATATGGATGGCTTCAGGTTCCTTGAGGTAAACCTG
GTTGTTTTGCCATAACATATAACCCGCATGAACCAGCAGTTAATATGAAG
AAGGAGAAGGGGAAAATGTTTCAACAGTTTGGAGGTGGCTTGTTTCAGTT
TGACAAGCTGAACAAACCTCTTGCGAGATGGGCGTGTGGCTTGCATTTAC
TGCTGCCGGTTTTCTTTTGCTTCGCACAACTACATTACACATCTTCATCA
CTACCCACCTTCATTTGGTTTATTAGTACTGTCGATAAAATATTCTGGTG
AAGGTTGGCCACGCCACCAGTTGCGGCTGGCGGTGTGTCAGAAACAGCGT
GTACTATGCCAATCCAATGCCTTCTCCCACACGTCATATGGCATCTGAGG
ATTTCGTCGGATGATGCTTTGCTGCTGACCAACTTGGAAGTTCCAACGGT
GTGGTGCAAAGCCCTACATGTTCTGTTGCTCTTTAGCCCAGGTTCAGTCT
TTCAATTTTCTCTTCCATTGGTGCTTCCTCCAACAATTCACGTCCCTATG
AGACAAGGAGGAAGCAGATGGTAAGACGAAGGCTGATATTTTCTTCTGTA
ACCGAGCCAGTCTGTGAGACAAGGGTCACGGTCACATCATCCTTGTCCCA
AAAGGGTACTCCCCCTCCCACCCGGGCGCCACTTATGCCCCCCTCCCCGC
CGTCTGGGCACCATCATTTTTAAAGCACAAAAAATATGTGTTTTTATCAT
TTGCTGGCAAAGGAAGGAGAGGTTTATTCCTATGGTGGGCAGTGCCCCGT
GTCCTTGGACAGGAGCCTGAAGCTGTTGGTCTGCTGTGACGCATTTGGAG
GGGTGCTGTACTTGGGGATTTTGAATCGGAGACTGCACGTTGATGTACTA
GGTCTGCGTGGTGCAGAGCCAAAACTGATTCAGGTCATCCCAAAGTGCAA
GGATGACAGAGCTTTGGGACAGGACAGAAACAACAACATACTAGATGTAC
AACAAGAATTGAATGTCTTCATGGCGCAGCTCTTTTCAAAATGAGAAGGT
CCCAACAGTAGAGAAATCGCGTTGGCCCAGCTGTCAAGGAGAGCGGATTT
CGGACATTCAGGTGATTTCGTTGATGGCGCAAGTTCGAAGCTGATTATCT
AATCTGAACCTGATGACTTCATCACTTTGTCTGCGAGCCGTGGTGAGGTG
GTGAGTTGCTTTCCTGGGAACATTCCTGTTAATTATCTTAGGAAGTTTCT
CGGACTTGTGCAGATCGGTCTGAGACCTACTCTTTTCTTTTCTTTTCTTT
TCTTTTTTTCTACGTTCTACTTGCAGTGCGCCCCTTCACATCCCGAGCCA
CACAACCACCGTCTATTTGCAGGCTGCCTTGACATCTGAGCACTTCGTCG
GACTAAGTCTGGCTACTGACTAAACCGAGGCTTCCAGCTGCCCTTAACCC
GACATGCTCTTTTGCCTTTTGGCCTCATCGCCCTCTTTCAGTTGTCTCTA
CCATGGGCGCTTCCTCTGGCAACTCACATCCATCGACGAGTGCATCTTCT
CCTTCCCGCAGGTCGAGGGTGTATCATCTGGACAGATGCAGTCACCCTCT
CATTTCGCAGCACGAGTGCTGCTTCCTAGCCCGTTTTTCTAATTTGTACA
AGGTACGGAGTAACTTCCACAAACCGGCCTCATCAACAGTAGGCGATGCT
CATGTTTCAACAACCGCCATTTGCGTAGATCATCGATCGTCTACAGCTAT
TTAACGGGAGGACATTCCGCGCAGCCCCCAGGGAATTTTCTGAAGAAGAA
CTTTGCTGTTGCCCAAAGGCGGAGCTAAAGCAGGGACTCGTACCGATGAC
CTCACGCATGCGAGTCGAGCGCTCTGCCAACTGAAACAGAAGCGCTTTAC
TATAGGGTTAGGATGTGTTGATCATGATTGATAACATTCAGGGGCGTTCC
ACGGAATCGTCCTCGTGGAGCGTGTAGGCGTCGCAGTTGCATCTATAACT
GACAGTGTTGAAAACGAGCAGGCAGCCAGGGCTCGGCGGCTGGTCATAGA
GTTGAGAATCCTCGAATCTCGAAGATCATAAGCGTCGTGGCGAAAAGTAC
CTATAGTATACTTCGCAACCAGAGGGAGAATGACCATGTCTATGGGAACT
TCCTCGACTCACAGGATGGAGATAGATTCACTGATCATGGCAGGGGGTTG
GTTGCCGGAGGAAGCGCCAACGGATGAGACAACCGAAAGGCTGGATCTGG
GCCAAAGGGCAAAAATAGCATGAAGGGCTTTGCGCAAATGGAATTTCAAG
TTGGTGACTAGCGAGACACTGCCCGACGATGTGCTCAGAAGCCATGGCTG
GCACGTGCAAGAAGACCATTTTTGTGCTCAGGAAGTGAGAGAAGCACGTA
GCATGGGACAAGCATAGAAAAAGAAGAAAAAATGGGTATTCTACTGACTG
GGATGAACATATATCTGTTGTGTGAAACATCTCATCATCACTTATTTTAT
ATTTTGTTTATTATATTATATACATGAACCCTTCGTTGCCATCGTCATTA
AAAACATTACTACCACCAACATTGAGGGGGAGAAGAGAGAAATAGAACAA
CACCAACAATTAAAAAAACAAATGAAACTTTAAAATACATTTTTGCTATG
CCAAAATGATAATCATAGGAAAATCTTGAAGTGTCATTTGACACAAAGGA
GGAAGCAGATGGTAAGATGAAGGCTGTCAATGTTTCACTCCCTGATGGAA
GCCCGATTCCGGGTTACTCTCCAAGATAAGTTGCTGAATAACGATGGTAG
CCCCCTGGTGGCTTCTTCTTCTTTTCCTTTTGTTTAGACTCTCATAATAT
TTCCCCCTAGATGTGTGTGAAGAAGATCGTAGCGGAGATGCTGTGGTGTG
GTGCTGTTATTGTTGGAATCATGATAATTATTATTTAAGTTTTGGCCCAA
CCACTCATCGCTGACCTCATCATTTTATTTTACTAGTATCAGAAAGAAAA
GGAGAGGAGTATTTAATAATAATTGCAGTAATAAATTTTTTATATATATA
TAAATAAGAGAAGGATGATGTATTATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:630735..634212-

>mRNA_H-akashiwo_Contig93.8.1 ID=mRNA_H-akashiwo_Contig93.8.1|Name=mRNA_H-akashiwo_Contig93.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig93:630735..634212- (Heterosigma akashiwo CCMP452)
ATGGCCTTTTTAAGCTCGCAATGCCATCTTCTGAAAAAGGTCCTGAGCCC
AGGAGGCTTCCACTTTCGATCTTTCGCTACAGGTTCCGTCAAGTGGTATG
ATAGGAAAAAAGGTTTTGGCTTCATCTTAGGGGCAGATGAGAAGGACTAC
TTTGTGCATTACACTTCAATAAATATGGATGGCTTCAGGTTCCTTGAGGA
AAATCTTGAAGTGTCATTTGACACAAAGGAGGAAGCAGATGGTAAGATGA
AGGCTGTCAATGTTTCACTCCCTGATGGAAGCCCGATTCCGGGTTACTCT
CCAAGATAA
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