mRNA_H-akashiwo_Contig999.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig999.2.1
Unique NamemRNA_H-akashiwo_Contig999.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK)

HSP 1 Score: 138 bits (348), Expect = 5.850e-40
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 PPSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            P  +AVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT
Sbjct:   39 PARKAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 109
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BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: D8LNY9_ECTSI (DNA repair helicase rad5,16, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.870e-25
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 PPSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNL 210
            P ++AVVFSQWT+MLDL E  + R GW   RLDG+MSQQQRE AL+ FAT+  + VML+SLKAGGVGLNL
Sbjct:    6 PGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNL 75
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BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.130e-22
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 PPSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            P ++AVVFSQWT+MLDL E  + R GW   RLDG+MSQQQRE AL+ FAT+  + VML+SLKAGGVGLNLT
Sbjct: 1462 PGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLT 1532
[Close]
BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A0L0H763_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H763_SPIPD)

HSP 1 Score: 90.1 bits (222), Expect = 1.990e-19
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    4 PSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            P +AVVFSQWT MLDL+E  LR  G+   RLDG MS+Q R DA+E F T+  + VML+SLKAGGVGLNLT
Sbjct: 1103 PIKAVVFSQWTNMLDLLEPSLRTYGFGFVRLDGKMSRQDRTDAMESFKTDPSVTVMLVSLKAGGVGLNLT 1172
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BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: UPI00192EDC85 (DNA repair protein RAD5A-like n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EDC85)

HSP 1 Score: 82.0 bits (201), Expect = 1.240e-18
Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    7 SQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNL 210
            S+++VFSQWT  LDL+++ L R      RLDGS+SQQQRE+ ++RF+ + DI V+L+SLKAGGVG+NL
Sbjct:    8 SKSIVFSQWTAFLDLLQIPLSRNKIPFVRLDGSLSQQQRENVIKRFSEDNDILVLLMSLKAGGVGVNL 75
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BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A7S3ZFV6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZFV6_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 2.060e-18
Identity = 38/67 (56.72%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:   10 QAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNL 210
            ++VVFSQWT+MLDL+E  L   G+++ RLDGSM+++QRE  L++F  + +  V+L+SLKAGGVGLNL
Sbjct:   32 KSVVFSQWTHMLDLIEPALTEKGFKYVRLDGSMNRKQREKVLDQFRGDAETEVILISLKAGGVGLNL 98
[Close]
BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A4D9CS79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS79_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.420e-18
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 PSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            P++AV+FSQWT MLDLVE  L   GW + RLDG  S  QR + L+ FA+   + VM+LSL+AGGVGLNLT
Sbjct: 1709 PAKAVIFSQWTGMLDLVETALEGRGWGYVRLDGGTSHAQRREVLQEFASNPRVRVMVLSLRAGGVGLNLT 1778
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BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: D8RRU1_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RRU1_SELML)

HSP 1 Score: 85.9 bits (211), Expect = 2.620e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 SQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            S++VVFSQWT  LDL+E+ L+R  +R  RLDG++SQ +RE  L+ F+   D+ VML+SLKAGGVGLNLT
Sbjct:  189 SKSVVFSQWTAFLDLLEIPLKRKNFRFVRLDGTLSQHKREQVLKDFSNIPDVAVMLISLKAGGVGLNLT 257
[Close]
BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A139AVK7_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AVK7_GONPJ)

HSP 1 Score: 86.7 bits (213), Expect = 3.280e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    4 PSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            P ++VVFSQWT  LD++ V LR  G++  RLDG MS+ +R  A+ERF T+ D+ VML+SLKAGGVGLNLT
Sbjct: 1034 PEKSVVFSQWTTFLDIIAVHLRTGGFQFVRLDGKMSRPERNLAMERFKTDPDVLVMLVSLKAGGVGLNLT 1103
[Close]
BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Match: A0A425DCE9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DCE9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.330e-18
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   10 QAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 213
            + VVFSQWT+MLDL++  L + G+ H R DGS+ Q  RE  L RF T+ D+ V+++SLKAGGVGLNLT
Sbjct:  400 KVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLT 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig999.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1XFX6_HETAK5.850e-4095.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LNY9_ECTSI3.870e-2567.14DNA repair helicase rad5,16, putative (Partial) (F... [more]
A0A6H5KHD4_9PHAE1.130e-2267.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0H763_SPIPD1.990e-1964.29Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
UPI00192EDC851.240e-1857.35DNA repair protein RAD5A-like n=1 Tax=Eucalyptus g... [more]
A0A7S3ZFV6_9EUKA2.060e-1856.72Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A4D9CS79_9STRA2.420e-1858.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D8RRU1_SELML2.620e-1859.42Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A139AVK7_GONPJ3.280e-1860.00Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A425DCE9_9STRA4.330e-1857.35Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig999contigH-akashiwo_Contig999:29082..31385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNY9
PFAMsHIRAN,Helicase_C,SNF2_N,UBA_4,zf-C3HC4,zf-C3HC4_3,zf-RING_2
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.34e-26
EggNOG OGsCOG0553@1|root,KOG1001@2759|Eukaryota
Descriptionhelicase activity
Cds size213
COG categoryKL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388071.125727-CDS-H-akashiwo_Contig999:29081..291541681388071.125727-CDS-H-akashiwo_Contig999:29081..29154Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig999 29082..29154 -
1681388071.135758-CDS-H-akashiwo_Contig999:31245..313851681388071.135758-CDS-H-akashiwo_Contig999:31245..31385Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig999 31246..31385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig999.2.1prot_H-akashiwo_Contig999.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig999 29082..31385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig999.2.1

>prot_H-akashiwo_Contig999.2.1 ID=prot_H-akashiwo_Contig999.2.1|Name=mRNA_H-akashiwo_Contig999.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
PPSQAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFAT
ETDIPVMLLSLKAGGVGLNLT
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mRNA from alignment at H-akashiwo_Contig999:29082..31385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig999.2.1 ID=mRNA_H-akashiwo_Contig999.2.1|Name=mRNA_H-akashiwo_Contig999.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2304bp|location=Sequence derived from alignment at H-akashiwo_Contig999:29082..31385- (Heterosigma akashiwo CCMP452)
CCGCCCTCCCAGGCCGTCGTGTTCTCTCAGTGGACCTACATGCTTGACCT
TGTCGAAGTTTTGCTCAGGCGGATGGGTTGGCGGCACACGCGGCTGGATG
GGTCAATGAGCCAGCAGCAGAGGGAAGACGCCCTTGAACGGTGGGGGGGG
GGGGCATAGAGGGAAGCTCTCTGGCATTGCACACTGCTTGTCCAAGGATC
TGTGTACAAAAGCGGGTTCAGTTTGTGTTTTTTGGCGGGTAAGTGCGCCT
TAAGTAATCTGTCTAAATATATTATATAGCCTCAAGCAGCATTTTCTTTC
CATGGGTATGGGTGTTCGTGGAGTGTGCGCAGCAACGAAGCTTCACCTGC
TCCTTGCATATATATATAACGGGAACGAACAGAGCATGAGGCAAAGGCGA
AGGAAGAGGATAGAAGGGACCGTCTGCGTCAGCACCGGGAGTGGGCTGCG
GCGACACAAGCACACCAGCTTCCTCTCCTCCCGGTGAAGAACCCACTTTC
TCCCCACCCTCTCCAAACCCTGAATTGTGGATGATAATTGGTCGGCCCTG
CCCGAGCATTGCTGAAAATTCCAAGCTGTTGTCCTTTTCCTCCCTGATCA
CCCCCCCCAGCTGCTCAATTTCGGCCTCTCTCACCCCCTCCCCCCTGCTT
GTCCCCTTCGTCGTTGTTCCGCTGCTGCTGCCTATTCTGCTGCTGATGCT
GATGCTGCTGCTCGGCCGCAGCAGCGCCAGCTGCGTCATCATCATCAGCA
GCAGCAGGCAGAAGAGCTACGTTGTTCATCGAAGGCTCGAGCAGCCCTTT
GATCTGCTGCTAGGCGAACCCTTCTGAGCTCGGCCTCTCTTTGCCTGCGC
AATTTTCGACGGGCTTTGTGGCTCTTGCTTTTGCTCCCATTGCGTGCCCC
TTCTCGAATAGTCCTTGGCGTCGTCGTGACATCCCCCAGTTCCGGAAAAC
CCGCAAGATCAGGTTCCCTAATCCTTCTTGCAGCATAACGCCTTCTCCAT
TCAAACCCATTGACTGGGCCTGGAACGAGCCAAGCATCGTCGCTGCTGCC
ACAGACGAAGCCCCCCGAGAACAGCACATGCCGAACTGCCCAGCCCCTCC
CCCCAACCCCCACTTCCTTTGTGCAAGCCATTGGTGCTTTCATTTTGCCG
CCGTAAATCCAGGGCAACTGAGTCGTATTGATTGAAGCCCAGTGCTCAAA
CGGGCAATCCAGCAGCTTAGGACACTCTCTCCTCTGAACATTGTGCCGGC
ATCGCACCCGAACCGATCCAAGCATCCTGTGCATGTTCGCAAATTGTGGG
CACTGTGCGCCAACCAAACCCCGTACCCCTACCCCCTGTTGAGGGCAGGA
GTGCACCCCCCCGGCGGTCTGCGGTCCATTAACCGGGACCTCTGTGTTCA
TACTAATTTTTCCAGAATTGCTACTACTAATAACTTTAAAAGAAGTGGGA
GTATATATATATATATTATATATATATATATATATATCGCGCTCATCAAA
GCGGTGGATCTGCGGACCAGGGGCTCCAGGAAGAGGTGGAGGAGCTCGGG
GTTCGAGGATGGCGAGGGGATTGCCACTCTCTTCCAGAGATAGTGGGGTG
TGTTGTATTTGATGTTCTGTATTGATTTGGGTTTTGGGATTTCATGTGTA
GGTTTTGATATATTACCACAGGGACATCTGCATAGATGCAAGGCGTAGGT
TGTTTTGTTTAAATTTAACTCTATATATATATATATATATGATGATGATG
ATGATGATGATGATGTTAAACTTAGTTTATACAGGTCTCGGTAATTCACT
CACACTAGGAGGGAGTGCCCTCCTGCGGCGACAACCAGACCTGCACCATC
GCCATACCCACTGCCATAAGCCCCACGACAAGCCCGCATAAGTTGCCAGT
TTTATCCCCCGCTCTCAGAACAAACCATTATCAAACCCATTGCCTCTCCC
CTCTCCTGATCTCCAGTCTCCCCGTCAATCTCACAAACCTGGCCAGCCTG
CCCACCTCCTGCAACAAAGCCTGAAGGCTGGCCTCCTCATTTCCTTTGTC
TATTAGATCTGAAACCTCATATATATATAATAATTCTCACTTGTGAATAT
GTCTTGCGCGTGCCTGGCATGTTATATGACTGAGTCATAGAGATAATAGT
TCCTCTCTGTCATGCTAAATCATGCTATTATATGTATATACTTTGCGGCG
CACATCATCGTTGCCTGCTGCTCAAATGCAGGTTTGCCACAGAAACGGAC
ATCCCGGTAATGCTTCTGTCCCTCAAAGCCGGTGGCGTTGGACTCAATCT
GACT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig999:29082..31385-

>mRNA_H-akashiwo_Contig999.2.1 ID=mRNA_H-akashiwo_Contig999.2.1|Name=mRNA_H-akashiwo_Contig999.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig999:29082..31385- (Heterosigma akashiwo CCMP452)
CCGCCCTCCCAGGCCGTCGTGTTCTCTCAGTGGACCTACATGCTTGACCT
TGTCGAAGTTTTGCTCAGGCGGATGGGTTGGCGGCACACGCGGCTGGATG
GGTCAATGAGCCAGCAGCAGAGGGAAGACGCCCTTGAACGGTTTGCCACA
GAAACGGACATCCCGGTAATGCTTCTGTCCCTCAAAGCCGGTGGCGTTGG
ACTCAATCTGACT
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