mRNA_H-akashiwo_Contig971.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig971.5.1
Unique NamemRNA_H-akashiwo_Contig971.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig971.5.1 vs. uniprot
Match: A0A7S3XNC5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNC5_HETAK)

HSP 1 Score: 146 bits (368), Expect = 1.720e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 RIRTPSGSLKRVEVFGTSTLKDLRSQLEAEGLVNSPKDKLLKGEHPIENETKTVDELGMKNGDILDLQSAEPRAP 225
            RIRTPSGSLKRVEVFGTSTLKDLRSQLEAEGLVNSPKDKLLKGEHPIENETKTVDELGMKNGDILDLQSAEPRAP
Sbjct:   33 RIRTPSGSLKRVEVFGTSTLKDLRSQLEAEGLVNSPKDKLLKGEHPIENETKTVDELGMKNGDILDLQSAEPRAP 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig971.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XNC5_HETAK1.720e-42100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig971contigH-akashiwo_Contig971:181272..181771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size230
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionNuclear pore localisation protein NPL4
Ec32 orthologEc-02_003900.1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388063.3356466-CDS-H-akashiwo_Contig971:181271..1812961681388063.3356466-CDS-H-akashiwo_Contig971:181271..181296Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig971 181272..181296 -
1681388063.3461092-CDS-H-akashiwo_Contig971:181458..1815831681388063.3461092-CDS-H-akashiwo_Contig971:181458..181583Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig971 181459..181583 -
1681388063.354594-CDS-H-akashiwo_Contig971:181693..1817711681388063.354594-CDS-H-akashiwo_Contig971:181693..181771Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig971 181694..181771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig971.5.1prot_H-akashiwo_Contig971.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig971 181272..181771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig971.5.1

>prot_H-akashiwo_Contig971.5.1 ID=prot_H-akashiwo_Contig971.5.1|Name=mRNA_H-akashiwo_Contig971.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
RIRTPSGSLKRVEVFGTSTLKDLRSQLEAEGLVNSPKDKLLKGEHPIENE
TKTVDELGMKNGDILDLQSAEPRAPP
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mRNA from alignment at H-akashiwo_Contig971:181272..181771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig971.5.1 ID=mRNA_H-akashiwo_Contig971.5.1|Name=mRNA_H-akashiwo_Contig971.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=500bp|location=Sequence derived from alignment at H-akashiwo_Contig971:181272..181771- (Heterosigma akashiwo CCMP452)
CGAATCCGAACCCCTAGTGGCTCTTTGAAAAGAGTTGAAGTGTTTGGCAC
CTCAACTTTAAAGGATCTGAGGTCCCAGGTAGCAATAAAGAGCACTTTCT
TGTTCTATCTTCTGCTTTTTTCTGTTCAAGATTTTGAAATTCCCCAAAGC
ATCCTTATCCTTTTACTGATTACATCAACCTCCTGTAGCTGGAAGCTGAG
GGCCTTGTAAACTCTCCAAAGGACAAGCTTTTGAAAGGGGAACATCCCAT
CGAGAATGAAACAAAGACTGTTGATGAATTAGGCATGAAGAATGGAGACA
TTCTTGACCTTCAGTAAGCCAAGCAAAAAAAACACCACAACTGTTTCTTC
CTGCTTCACATCTTCTTGGCTCCAGTGGTCCATCATGTGCTATTTGGCCA
AAAGCTTCACCACTGCCTTAGTAAAACAACATTCATCAACCCAGCAATAC
CAGTCCTTCCTCCTCCCTCCCCCAGGTCTGCAGAGCCTCGGGCGCCCCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig971:181272..181771-

>mRNA_H-akashiwo_Contig971.5.1 ID=mRNA_H-akashiwo_Contig971.5.1|Name=mRNA_H-akashiwo_Contig971.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig971:181272..181771- (Heterosigma akashiwo CCMP452)
CGAATCCGAACCCCTAGTGGCTCTTTGAAAAGAGTTGAAGTGTTTGGCAC
CTCAACTTTAAAGGATCTGAGGTCCCAGCTGGAAGCTGAGGGCCTTGTAA
ACTCTCCAAAGGACAAGCTTTTGAAAGGGGAACATCCCATCGAGAATGAA
ACAAAGACTGTTGATGAATTAGGCATGAAGAATGGAGACATTCTTGACCT
TCAGTCTGCAGAGCCTCGGGCGCCCCCC
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