mRNA_H-akashiwo_Contig967.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig967.6.1
Unique NamemRNA_H-akashiwo_Contig967.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A7S4DG95_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG95_HETAK)

HSP 1 Score: 206 bits (523), Expect = 2.910e-66
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 MEQEIPQAGHEDHQMVQPEQDDPPMVNGEGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQTEISTGKKA 303
            MEQEIPQAGHEDHQMVQPEQDDPPMVNGEGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQTEISTGKKA
Sbjct:    1 MEQEIPQAGHEDHQMVQPEQDDPPMVNGEGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQTEISTGKKA 101          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A7S2UXR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXR8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.120e-21
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1
Query:   91 WPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQ 276
            WP YCNP YKMP++IEV+V IEETGE RY+PV + + + RK+YLGGYRH++T  V+HHA  Q
Sbjct:   58 WPPYCNPTYKMPSVIEVQVHIEETGETRYLPVFVNKFQGRKRYLGGYRHRETQKVYHHASCQ 119          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A7S3H598_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H598_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.430e-14
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   91 WPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQT 279
            WP YCNP Y MP+ I+VKV +    +  Y P+ IE+A   KKYLGGYR+K  G V+HHA SQT
Sbjct:   56 WPSYCNPTYVMPDKIDVKVTV--GADTYYFPLDIEKASAPKKYLGGYRNKLNGYVYHHASSQT 116          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A482US05_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482US05_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 1.440e-12
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   76 VNGEGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQ 270
            V  E WP+Y NP Y MP++IEVKV ++   E    PV I +A+  K YLGGYR+K  GAVFHHA+
Sbjct:   18 VATERWPDYVNPHYVMPDMIEVKVTVD--SETFLFPVHIVKAQGGKTYLGGYRNKINGAVFHHAR 80          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A8J2SZI2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZI2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.650e-12
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   70 PMVNGEGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQTEI 285
            P    E WP Y +P+YKMP  IEV V  +   ++  + V IE+   RK YLGGYRHKKTG V+HHA SQ+ +
Sbjct:   13 PAAPTEEWPPYADPSYKMPASIEVTVQ-KRNEDDVTLTVNIEKENTRKPYLGGYRHKKTGRVYHHASSQSVV 83          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A7S2CMW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMW8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.190e-10
Identity = 41/93 (44.09%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   25 GHEDHQMVQPEQDDPPMVNGEGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIER-AEYRKKYLGGYRHKKTGAVFHHAQSQTEISTGKK 300
            G ED   +QPE           WP YC+P Y MPN + V V   + G      ++IE+ AE  K YLGGYRHK TG V+HHA SQT     K+
Sbjct:   21 GEEDTAPIQPE-----------WPSYCDPDYIMPNSMSVSVK-RQNGTIFKFDISIEKTAEKNKPYLGGYRHKGTGFVYHHASSQTPAGLDKR 101          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A8J6JPY1_ELECQ (Ubiquitin-like domain-containing protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6JPY1_ELECQ)

HSP 1 Score: 65.1 bits (157), Expect = 4.050e-10
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  115 YKMPNLIEVKVVIEETGEERY--IPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQT 279
            Y MP++I V+V   +TG+E Y  I V IER  YRK YLGGYRHK TG VFHHA +QT
Sbjct:  248 YSMPDVITVRV---QTGDEAYQDIAVEIERLNYRKPYLGGYRHKVTGVVFHHAGTQT 301          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: UPI001ABE68A9 (IQ and ubiquitin-like domain-containing protein n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABE68A9)

HSP 1 Score: 62.8 bits (151), Expect = 2.620e-9
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  115 YKMPNLIEVKVVIEETGEERY--IPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQT 279
            Y MP++I V+V   +TG+E Y  I V IER  YRK YLGGYRHK T  VFHHA +QT
Sbjct:  255 YSMPDVITVRV---QTGDETYQDIAVEIERLNYRKPYLGGYRHKVTSVVFHHAGTQT 308          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: A0A6I8RBR8_XENTR (IQ motif and ubiquitin domain-containing n=3 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8RBR8_XENTR)

HSP 1 Score: 60.8 bits (146), Expect = 1.250e-8
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query:  121 MPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQT 279
            MP++I V+V  +E G  R + V IER  YRK YLGGYRHK TG VFHHA +QT
Sbjct:  281 MPDVITVRVQTDE-GSYRDLVVEIERLNYRKPYLGGYRHKATGVVFHHAGTQT 332          
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Match: UPI0008549550 (IQ and ubiquitin-like domain-containing protein n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008549550)

HSP 1 Score: 60.8 bits (146), Expect = 1.250e-8
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  115 YKMPNLIEVKVVIEETGEERY--IPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQT 279
            Y MP++I V+V   +TGE+ Y  I V IER  YRK YLGGYRHK T  V+HHA +QT
Sbjct:  279 YSMPDVITVRV---QTGEDAYQDIAVEIERLNYRKPYLGGYRHKLTEVVYHHAGTQT 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig967.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DG95_HETAK2.910e-66100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UXR8_9STRA3.120e-2162.90Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3H598_9STRA4.430e-1455.56Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482US05_9ARCH1.440e-1253.85Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SZI2_9STRA8.650e-1250.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CMW8_9STRA1.190e-1044.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J6JPY1_ELECQ4.050e-1061.40Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
UPI001ABE68A92.620e-959.65IQ and ubiquitin-like domain-containing protein n=... [more]
A0A6I8RBR8_XENTR1.250e-860.38IQ motif and ubiquitin domain-containing n=3 Tax=X... [more]
UPI00085495501.250e-857.89IQ and ubiquitin-like domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig967contigH-akashiwo_Contig967:379625..380229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8364.ENSXETP00000047878
Preferred nameIQUB
PFAMsubiquitin
Model size305
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
Exons3
Evalue2.01e-09
EggNOG OGs28JBT@1|root,2QRQT@2759|Eukaryota,392X5@33154|Opisthokonta,3BGD5@33208|Metazoa,3CRAX@33213|Bilateria,482HU@7711|Chordata,48WCD@7742|Vertebrata
Descriptionsmoothened signaling pathway
Cds size303
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.6162424-CDS-H-akashiwo_Contig967:379624..3796511681388061.6162424-CDS-H-akashiwo_Contig967:379624..379651Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig967 379625..379651 -
1681388061.6266792-CDS-H-akashiwo_Contig967:379814..3800211681388061.6266792-CDS-H-akashiwo_Contig967:379814..380021Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig967 379815..380021 -
1681388061.63529-CDS-H-akashiwo_Contig967:380160..3802291681388061.63529-CDS-H-akashiwo_Contig967:380160..380229Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig967 380161..380229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig967.6.1prot_H-akashiwo_Contig967.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig967 379625..380229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig967.6.1

>prot_H-akashiwo_Contig967.6.1 ID=prot_H-akashiwo_Contig967.6.1|Name=mRNA_H-akashiwo_Contig967.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
MEQEIPQAGHEDHQMVQPEQDDPPMVNGEGWPEYCNPAYKMPNLIEVKVV
IEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQTEISTGKK
A
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mRNA from alignment at H-akashiwo_Contig967:379625..380229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig967.6.1 ID=mRNA_H-akashiwo_Contig967.6.1|Name=mRNA_H-akashiwo_Contig967.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=605bp|location=Sequence derived from alignment at H-akashiwo_Contig967:379625..380229- (Heterosigma akashiwo CCMP452)
ATGGAACAAGAAATACCTCAAGCAGGCCACGAAGATCATCAAATGGTACA ACCAGAACAGGATGATCCCGTAAGCATTTCTCCCCAAAAGGACATGGTAC AAAACATCAGGGTTTTACTGCTACAGATTGTATATGAATTTTGTGAGTAA AAGAGTAGATTTTGGCTACATGGTTTCATTTCCAAATTATTCTCTATGCA TACCCCAGCCGATGGTCAATGGAGAGGGCTGGCCAGAGTACTGCAATCCA GCTTACAAGATGCCGAACTTGATTGAAGTTAAAGTAGTCATTGAGGAAAC GGGGGAGGAGCGATACATTCCCGTGGCCATCGAGCGCGCTGAGTACCGGA AGAAATACCTAGGAGGCTATCGGCATAAAAAAACTGGTGCTGTTTTCCAT CATGCTCAGAGCCAGGTCGGCTTTCTACGTGCACGTTTGCATTGCTCTGT TCAATTCTTTCGCCGTTGCTTCCATTCCCTGCCCGCTGCTTTATCCTGAT GCAAGATCTCACGACTTTTGGTATGGGGATACCTTTGACGCCCCTCTTCC TTACCGCACGCGGGGGGGGGGGGTGCAGACGGAGATCTCGACGGGGAAGA AGGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig967:379625..380229-

>mRNA_H-akashiwo_Contig967.6.1 ID=mRNA_H-akashiwo_Contig967.6.1|Name=mRNA_H-akashiwo_Contig967.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig967:379625..380229- (Heterosigma akashiwo CCMP452)
ATGGAACAAGAAATACCTCAAGCAGGCCACGAAGATCATCAAATGGTACA
ACCAGAACAGGATGATCCCCCGATGGTCAATGGAGAGGGCTGGCCAGAGT
ACTGCAATCCAGCTTACAAGATGCCGAACTTGATTGAAGTTAAAGTAGTC
ATTGAGGAAACGGGGGAGGAGCGATACATTCCCGTGGCCATCGAGCGCGC
TGAGTACCGGAAGAAATACCTAGGAGGCTATCGGCATAAAAAAACTGGTG
CTGTTTTCCATCATGCTCAGAGCCAGACGGAGATCTCGACGGGGAAGAAG
GCG
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