mRNA_H-akashiwo_Contig961.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig961.8.1
Unique NamemRNA_H-akashiwo_Contig961.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A813CJV7_9DINO (ML4 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CJV7_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 1.200e-15
Identity = 40/91 (43.96%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    7 WSP------VFSVITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKEN-FHFLNWLNVLCFFCLCTFYGYFA 258
            W+P      +  V+ R YG+LILGQS++T++A++  + +++ A V+AY ++F LT ++LL AQL ++ +H LNWLN+L F CL  FYG+F+
Sbjct:   20 WNPDDGQVKITHVVIRLYGALILGQSFLTWAAKQTDDGRVRLAAVRAYAVVFGLTTLALLRAQLTDSTWHVLNWLNLLLFACLAAFYGWFS 110          
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A813CV67_9DINO (ML4 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CV67_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 3.450e-15
Identity = 40/91 (43.96%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    7 WSP------VFSVITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKEN-FHFLNWLNVLCFFCLCTFYGYFA 258
            W+P      +  V+ R YG+LILGQS++T++A++  + +++ A V+AY ++F LT ++LL AQL ++ +H LNWLN+L F CL  FYG+F+
Sbjct:   54 WNPDDGQVKITHVVIRLYGALILGQSFLTWAAKQTDDGRVRLAAVRAYAVVFGLTTLALLRAQLTDSTWHVLNWLNLLLFACLAAFYGWFS 144          
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A1Q9DKB1_SYMMI (Protein MEI2-like 4 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DKB1_SYMMI)

HSP 1 Score: 75.5 bits (184), Expect = 5.160e-14
Identity = 40/91 (43.96%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    7 WSP------VFSVITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKEN-FHFLNWLNVLCFFCLCTFYGYFA 258
            W+P      +  V+ R YG+LILGQS++T++A++  + +++ A V+AY ++F LT ++LL AQL ++ +H LNWLN+L F CL  FYG+F+
Sbjct:   48 WNPDDGQVKITHVVIRLYGALILGQSFLTWAAKQTDDGRVRLAAVRAYAVVFGLTTLALLRAQLTDSTWHVLNWLNLLLFACLAAFYGWFS 138          
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A5A8D739_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D739_CAFRO)

HSP 1 Score: 65.5 bits (158), Expect = 1.810e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 GSWSPVFSVITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKENFHFLNWLNVLCFFCLCTFYGYFA 258
            G    +  ++ R YG++IL Q +IT++AR   +  ++K LVQ Y ++F LTF++LL AQL      LNWLNV  F  L  FY +F 
Sbjct:   53 GGSEKIVHLVVRLYGAIILAQGFITWTARSVGDGAMRKGLVQTYALMFALTFIALLRAQLTGGMLALNWLNVFMFGALSGFYSWFV 138          
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A7S2UWE6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWE6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.560e-11
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   28 ITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKENFHF--LNWLNVLCFFCLCTFYGYF 255
            +TR YG LI+ QSWI ++ARK  +  I++A VQAYF  F+LTF+SLL AQL        +NW+ ++ F  L  +YGYF
Sbjct:   60 LTRVYGCLIMAQSWIVWNARKVDDGVIRRAFVQAYFGCFVLTFLSLLRAQLTAETLMVPMNWVIIVVFAFLSIYYGYF 137          
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A813KVQ1_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KVQ1_POLGL)

HSP 1 Score: 65.1 bits (157), Expect = 6.390e-11
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   25 VITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKEN-FHFLNWLNVLCFFCLCTFYGYF 255
            V+ R YG+LI+GQS I +  RK  +  +++A+V+AYF++F LT ++LL AQL ++ +H  N LN+L F  L  FYG+F
Sbjct:  113 VVIRIYGALIVGQSLIVWEVRKTDDGVVRRAIVRAYFVVFTLTTLALLRAQLTDSTWHVANLLNLLLFGALAGFYGWF 190          
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Match: A0A7S3XH98_OXYMA (Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XH98_OXYMA)

HSP 1 Score: 58.5 bits (140), Expect = 7.170e-9
Identity = 32/79 (40.51%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   25 VITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLLTFVSLLTAQLKE-NFHFLNWLNVLCFFCLCTFYGYFA 258
            V+ R YG+L+ GQ  + +S +  S+  +++++V AYF++FLLT + LL + L + ++H +N +NV  FFCL  FYG+F 
Sbjct:   51 VVIRMYGALVFGQGIMCYSMQWVSDGVVRRSVVVAYFVVFLLTEIVLLRSMLTDTHWHSVNAMNVGLFFCLTCFYGWFG 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig961.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A813CJV7_9DINO1.200e-1543.96ML4 protein n=1 Tax=Symbiodinium necroappetens Tax... [more]
A0A813CV67_9DINO3.450e-1543.96ML4 protein (Fragment) n=1 Tax=Symbiodinium sp. KB... [more]
A0A1Q9DKB1_SYMMI5.160e-1443.96Protein MEI2-like 4 n=4 Tax=Symbiodinium TaxID=294... [more]
A0A5A8D739_CAFRO1.810e-1141.86Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S2UWE6_9STRA2.560e-1148.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A813KVQ1_POLGL6.390e-1146.15Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S3XH98_OXYMA7.170e-940.51Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig961contigH-akashiwo_Contig961:428332..428590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_05231T0
Model size259
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.52e-07
EggNOG OGs2AWIT@1|root,2RZYW@2759|Eukaryota
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.0740888-CDS-H-akashiwo_Contig961:428331..4285891681388060.0740888-CDS-H-akashiwo_Contig961:428331..428589Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig961 428332..428589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig961.8.1prot_H-akashiwo_Contig961.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig961 428332..428589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig961.8.1

>prot_H-akashiwo_Contig961.8.1 ID=prot_H-akashiwo_Contig961.8.1|Name=mRNA_H-akashiwo_Contig961.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=86bp
GSWSPVFSVITRCYGSLILGQSWITFSARKNSNLKIKKALVQAYFIIFLL
TFVSLLTAQLKENFHFLNWLNVLCFFCLCTFYGYFA
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mRNA from alignment at H-akashiwo_Contig961:428332..428590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig961.8.1 ID=mRNA_H-akashiwo_Contig961.8.1|Name=mRNA_H-akashiwo_Contig961.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=259bp|location=Sequence derived from alignment at H-akashiwo_Contig961:428332..428590+ (Heterosigma akashiwo CCMP452)
GGAAGCTGGAGCCCGGTTTTTTCGGTGATTACTCGTTGCTACGGCAGTTT GATCTTGGGGCAGAGCTGGATCACATTTAGTGCCAGAAAAAACAGCAACC TTAAAATTAAAAAAGCACTTGTTCAAGCATATTTTATCATCTTCCTGCTT ACTTTTGTTTCGCTTTTGACTGCTCAACTCAAGGAGAATTTTCACTTTTT GAACTGGCTCAATGTCCTCTGCTTTTTCTGTTTATGCACCTTTTATGGTT ACTTCGCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig961:428332..428590+

>mRNA_H-akashiwo_Contig961.8.1 ID=mRNA_H-akashiwo_Contig961.8.1|Name=mRNA_H-akashiwo_Contig961.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=258bp|location=Sequence derived from alignment at H-akashiwo_Contig961:428332..428590+ (Heterosigma akashiwo CCMP452)
GGAAGCTGGAGCCCGGTTTTTTCGGTGATTACTCGTTGCTACGGCAGTTT
GATCTTGGGGCAGAGCTGGATCACATTTAGTGCCAGAAAAAACAGCAACC
TTAAAATTAAAAAAGCACTTGTTCAAGCATATTTTATCATCTTCCTGCTT
ACTTTTGTTTCGCTTTTGACTGCTCAACTCAAGGAGAATTTTCACTTTTT
GAACTGGCTCAATGTCCTCTGCTTTTTCTGTTTATGCACCTTTTATGGTT
ACTTCGCC
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