mRNA_H-akashiwo_Contig961.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig961.7.1
Unique NamemRNA_H-akashiwo_Contig961.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A7S3XS93_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS93_HETAK)

HSP 1 Score: 196 bits (499), Expect = 3.890e-59
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    1 AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            AGATVASAVVGVRTVHAFGMNEAVL DYR ILEKKMKSDAKKSSIAG+ALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDML ALFCL+SVSFSMGDAAGLAGD
Sbjct:   47 AGATVASAVVGVRTVHAFGMNEAVLGDYRVILEKKMKSDAKKSSIAGIALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLAALFCLISVSFSMGDAAGLAGD 151          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A7S4D629_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D629_HETAK)

HSP 1 Score: 196 bits (499), Expect = 4.450e-59
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    1 AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            AGATVASAVVGVRTVHAFGMNEAVL DYR ILEKKMKSDAKKSSIAG+ALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDML ALFCL+SVSFSMGDAAGLAGD
Sbjct:   47 AGATVASAVVGVRTVHAFGMNEAVLGDYRVILEKKMKSDAKKSSIAGIALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLAALFCLISVSFSMGDAAGLAGD 151          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A7S3XS82_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS82_HETAK)

HSP 1 Score: 116 bits (291), Expect = 2.230e-30
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            AGAT+++A+ G+RTVHAFGM + V  +Y  +LEK    + K +  +G ALGY QG PM  YAFLFW GA+L+ +GD+ FE M+++LF L++ +F M D A LAGD
Sbjct:   27 AGATISAAIQGIRTVHAFGMEKVVADEYALLLEKNASIEKKAACASGAALGYGQGAPMMFYAFLFWFGAFLIAEGDVTFEAMMSSLFALMTSAFGMADGAQLAGD 131          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 7.880e-14
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   19 SAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAG 303
            SA+ G+ TV AF M E + ++Y+   E  + +  K+  IAG A GYSQG+  +V+A +F++GA +V+ G + + D  TA+F ++  +F +G   G
Sbjct:  904 SALQGMSTVAAFNMQERLAAEYKQASEGSLDARRKRGLIAGAAFGYSQGITFWVFALMFYVGAIMVDNGQVEYGDFFTAMFAVIFGAFGVGQITG 998          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A6H5JWI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.740e-13
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   40 TVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAG 303
            TV AF M E + +DY+   E  + +  K+  IAG A GYSQG+  +V+A +F+ GA +V+ G + + D  TA+F ++  +F +G  +G
Sbjct:    3 TVTAFNMQERLAADYKQASEGSLDARRKRGLIAGAAFGYSQGITFWVFALMFYAGAIMVDNGQVEYGDFFTAMFAVIFGAFGVGQISG 90          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: B1PRK4_CYPGI (ATP-binding cassette sub-family B member 1 (Fragment) n=1 Tax=Cyphoma gibbosum TaxID=217775 RepID=B1PRK4_CYPGI)

HSP 1 Score: 68.6 bits (166), Expect = 2.770e-11
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            AG T   A+  +RTV + G    +   +   L     S  KK  I G A G+SQG   FVYA  F LGAYL+ Q ++NFED+      +V  + ++G+A+  A D
Sbjct:  198 AGKTATEAIDNIRTVVSLGREITMHDRFMTHLRGPYNSALKKGHIVGFAFGFSQGAIFFVYAASFILGAYLIEQSEMNFEDVFMVFSAIVFSAMAVGNASAFAPD 302          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A6G0X3T6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3T6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.380e-10
Identity = 31/104 (29.81%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    4 GATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            G+    A+   RT+ AFG+ E  +  Y  +L+  ++ +A+ + + GV  G++      VYA +FW GA L+N G ++F+ ++  L  ++  S  +G  A   GD
Sbjct:  896 GSIATEAITNARTITAFGLQENFIERYNTLLDGPLRQEARAAHVNGVFSGFAGFSTFAVYALVFWYGARLMNDGAIDFKQLMNTLMAIMMASQGLGQTASQLGD 999          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A662XHL0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHL0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.490e-10
Identity = 30/104 (28.85%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    4 GATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            GA  +  +  +RTV + G+ ++    +  +L++ MKS  + + + G+A+G+S  +    YAF FW G  LVN G ++F  ++ +L  ++  S S+G++     D
Sbjct:  319 GAHASEVLSSIRTVVSLGLEKSSCDKFSTLLDEPMKSGERDAQVNGLAVGFSSFIVFATYAFAFWYGGKLVNDGSISFRQLMRSLMAIIMSSQSVGNSVAYVAD 422          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: UPI0014580F7D (LOW QUALITY PROTEIN: ATP-dependent translocase ABCB1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014580F7D)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-9
Identity = 33/105 (31.43%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            AG   +  +  +RTV A    +A    Y   L+   K+  +K+ + G+A  +SQ V  F++A  F+ GAYLV +G+++F+D+      +V  + +MG+A+  A D
Sbjct:  954 AGKVASEGIGNIRTVAALTKEDAFFRLYTESLKAPYKASKRKAHLIGMAFSFSQSVVYFLHAAAFYYGAYLVREGEMDFDDVFKVFAAIVFGAMAMGNASAFAPD 1058          
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Match: A0A2R5G2F3_9STRA (ABC transporter B family member 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2F3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-9
Identity = 34/105 (32.38%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVALGYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAAGLAGD 315
            AG  +  ++ G+RTV AF + + V+S Y + L+   +   +K  +AG+ +G+SQGV   +Y   F+  A L+      F ++L A+F L+    S G A  +A D
Sbjct:  975 AGQVLQESISGIRTVTAFSLRKRVVSLYDSFLDGPTRLAVRKGLLAGLGMGFSQGVIFCIYGIAFYYTAVLIETQGFVFSELLRAVFLLLFAGVSAGQAGAMAPD 1079          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig961.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XS93_HETAK3.890e-5995.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D629_HETAK4.450e-5995.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XS82_HETAK2.230e-3051.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FHL1_ECTSI7.880e-1436.84ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]
A0A6H5JWI0_9PHAE7.740e-1337.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B1PRK4_CYPGI2.770e-1137.14ATP-binding cassette sub-family B member 1 (Fragme... [more]
A0A6G0X3T6_9STRA1.380e-1029.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662XHL0_9STRA2.490e-1028.85Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
UPI0014580F7D2.280e-931.43LOW QUALITY PROTEIN: ATP-dependent translocase ABC... [more]
A0A2R5G2F3_9STRA2.280e-932.38ABC transporter B family member 3 n=1 Tax=Hondaea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig961contigH-akashiwo_Contig961:381177..381493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4006.Lus10020905
PFAMsABC_membrane,ABC_tran
Model size317
Max annot lvl35493|Streptophyta
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0007275,GO:0008150,GO:0008361,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009637,GO:0009639,GO:0009640,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009908,GO:0009914,GO:0009926,GO:0009958,GO:0009966,GO:0009987,GO:0010033,GO:0010218,GO:0010315,GO:0010329,GO:0010540,GO:0010541,GO:0010646,GO:0010817,GO:0010928,GO:0015562,GO:0016020,GO:0016043,GO:0022414,GO:0022622,GO:0022857,GO:0023051,GO:0032501,GO:0032502,GO:0032535,GO:0042221,GO:0043473,GO:0043476,GO:0043478,GO:0043479,GO:0043480,GO:0043481,GO:0044464,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048527,GO:0048528,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0048859,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0080161,GO:0090066,GO:0090567,GO:0090691,GO:0090696,GO:0099402
Exons1
Evalue1.67e-16
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,37PGZ@33090|Viridiplantae,3GEHD@35493|Streptophyta,4JDDH@91835|fabids
EC3.6.3.44
DescriptionABC transporter B family member
Cds size315
COG categoryQ
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.0466316-CDS-H-akashiwo_Contig961:381176..3814911681388060.0466316-CDS-H-akashiwo_Contig961:381176..381491Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig961 381177..381491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig961.7.1prot_H-akashiwo_Contig961.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig961 381177..381491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig961.7.1

>prot_H-akashiwo_Contig961.7.1 ID=prot_H-akashiwo_Contig961.7.1|Name=mRNA_H-akashiwo_Contig961.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
AGATVASAVVGVRTVHAFGMNEAVLSDYRAILEKKMKSDAKKSSIAGVAL
GYSQGVPMFVYAFLFWLGAYLVNQGDLNFEDMLTALFCLVSVSFSMGDAA
GLAGD
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mRNA from alignment at H-akashiwo_Contig961:381177..381493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig961.7.1 ID=mRNA_H-akashiwo_Contig961.7.1|Name=mRNA_H-akashiwo_Contig961.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=317bp|location=Sequence derived from alignment at H-akashiwo_Contig961:381177..381493+ (Heterosigma akashiwo CCMP452)
GCGGGGGCGACGGTGGCCAGCGCGGTGGTGGGCGTGCGCACCGTGCACGC GTTCGGGATGAACGAGGCGGTGCTGAGCGACTACCGGGCCATCCTGGAGA AGAAGATGAAGAGCGACGCGAAGAAGTCCAGCATCGCCGGCGTTGCCCTG GGGTACAGCCAGGGGGTGCCCATGTTCGTCTACGCCTTCCTCTTCTGGCT GGGCGCCTACCTCGTCAACCAGGGGGACCTGAACTTCGAGGACATGCTCA CGGCGCTCTTCTGCCTCGTCAGCGTCAGCTTCTCCATGGGCGACGCCGCC GGGCTGGCCGGCGATCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig961:381177..381493+

>mRNA_H-akashiwo_Contig961.7.1 ID=mRNA_H-akashiwo_Contig961.7.1|Name=mRNA_H-akashiwo_Contig961.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig961:381177..381493+ (Heterosigma akashiwo CCMP452)
GCGGGGGCGACGGTGGCCAGCGCGGTGGTGGGCGTGCGCACCGTGCACGC
GTTCGGGATGAACGAGGCGGTGCTGAGCGACTACCGGGCCATCCTGGAGA
AGAAGATGAAGAGCGACGCGAAGAAGTCCAGCATCGCCGGCGTTGCCCTG
GGGTACAGCCAGGGGGTGCCCATGTTCGTCTACGCCTTCCTCTTCTGGCT
GGGCGCCTACCTCGTCAACCAGGGGGACCTGAACTTCGAGGACATGCTCA
CGGCGCTCTTCTGCCTCGTCAGCGTCAGCTTCTCCATGGGCGACGCCGCC
GGGCTGGCCGGCGAT
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