mRNA_H-akashiwo_Contig958.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig958.2.1
Unique NamemRNA_H-akashiwo_Contig958.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 597 bits (1540), Expect = 5.250e-215
Identity = 295/296 (99.66%), Postives = 296/296 (100.00%), Query Frame = 1
Query:    1 GSSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAAN 888
            GSSQA+VSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAAN
Sbjct:   44 GSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAAN 339          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 280 bits (716), Expect = 5.430e-91
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 1
Query:    1 GSSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 417
            GSSQAIVSEFKQSLASKY+LTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL
Sbjct:  130 GSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 244 bits (623), Expect = 2.160e-70
Identity = 124/297 (41.75%), Postives = 186/297 (62.63%), Query Frame = 1
Query:    4 SSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAAN 888
            S ++ +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LLE +G  Q    P+ EDN AC+ WAND  V+K  RH HVSYH  KE V    I + Y+ T  Q+AD+ TK L+  N
Sbjct:  690 SDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 197 bits (501), Expect = 2.710e-56
Identity = 111/297 (37.37%), Postives = 166/297 (55.89%), Query Frame = 1
Query:    1 GSSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPT--PGFKAELSDANL--YRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 876
            GSS  ++SE+K+ +  KY LTD GE++ +LGIKV RD+  +   LSQ ++I   LA+F    L     P+D  + LT +  P   A+++      YR  +G+L + A  TRP+++F +  L +   NP   H+EAV+R FRYL GT++  L+ GG    L  + D+D  +      ++TGY+  +    + WSSK Q  VT ST EAEY+A   A K+ MW+R LL E+  P   PT +  D+ + +    D   + R +H  + YH  +  V  GT+R+ Y  T+D  AD LTKAL
Sbjct:  152 GSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGLEGYVDADGASQE-HRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIRYVVEAGTLRLIYCPTNDMTADTLTKAL 447          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A2I0XAK1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XAK1_9ASPA)

HSP 1 Score: 201 bits (511), Expect = 2.070e-55
Identity = 113/296 (38.18%), Postives = 174/296 (58.78%), Query Frame = 1
Query:    1 GSSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDAN--LYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRL-GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALN 879
            G+ Q  + +  Q+L S++++ D G+L+Q LGI+V         HLSQ  F +  L + G+       TP     + T     +A L+ AN  LYR + G+L ++   TRP+++F V+K+ +   NP   HFE+++R  RY+ GT    L L GGDL LR+++D+D+  D  D KS+TGY  FLG + I WS K Q AV  S+ EAEY AL +A  ++ W+R LL E+ CPQH PTP+  DN++ +  AN+ + + R +H  V  H  +  +   +I++ +I T DQ+AD+ TK L+
Sbjct:  498 GNCQQAIKQLLQTLNSRFTMKDLGQLSQFLGIQVTHTPSG--LHLSQGHFAQTILHRAGMLNCKPVSTPSQIKNNSTN----QASLAFANPSLYRQLAGSLQYLT-LTRPDISFAVNKVCQHMQNPTNLHFESLKRLLRYIHGTLHVGLPLSGGDLTLRSYADADWAGDTSDRKSITGYCNFLGHSLISWSVKKQNAVARSSTEAEYRALAAAAAEVTWIRRLLHELDCPQHSPTPLYCDNTSAIALANNPVFHARTKHIDVDCHYIRNCIKENSIQVHHISTKDQIADLFTKPLH 786          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 188 bits (477), Expect = 3.090e-54
Identity = 102/297 (34.34%), Postives = 166/297 (55.89%), Query Frame = 1
Query:   10 QAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANL----YRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDL--VLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNA 882
            +A+++  K  +A K+ + D G    ILGI++  D   +   +S  ++ +  + KFG +    C TPL+  V LT     + E   A +    YRS+VG+L ++A  TRP+++  V KL R   NP  KH++A  +  RYL  T+   +   G L   L A+SD+D+  +R D +SV+G +L L  AP+VW S  Q  V  S+ EAEY+AL   VK+ +W+R LL+++G  Q   T + EDN   +  A ++    R +H  + YH  +E+V    + + Y+ T++Q+AD +TK L++
Sbjct:    8 KAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSS 304          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA)

HSP 1 Score: 187 bits (474), Expect = 7.360e-54
Identity = 105/294 (35.71%), Postives = 163/294 (55.44%), Query Frame = 1
Query:   13 AIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPT--PGFKAELS--DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--LRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 876
            A ++  K  +   + L D G +  ILGI+V  D  +K   L Q  +I D + +F         TP+D ++ +T    P  +AE++      +RS++G+L+++A  TRP++A  V +L R   NP  +H++A  +  RYLKGT++  +   G +   L A+SD+D+ +DR D +SV+G +L L  AP+VW +  Q  V  ST E EY+AL   VK+ MW R LL+ +G  Q   T + EDN   +  A +     R +H  + YH  +E++  G I + YI T +QVAD LTK L
Sbjct:    2 ATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIADKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQAEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 295          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.130e-53
Identity = 105/294 (35.71%), Postives = 161/294 (54.76%), Query Frame = 1
Query:   13 AIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLT----PTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--LRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 876
            A ++  K  +   + L D G +  ILGI+V  D   K   L Q  +I D + +F         TP+D ++ +T    P    +  +     +RS++G+L+++A  TRP++A  V +L R   NP  +H++A  +  RYLKGT++  +  GG +   L A+SD+D+ +DR D +SV+G +L L  AP+VW +  Q  V  ST EAEY+AL   VK+ MW R LL+ +G  Q   T + EDN   +  A +     R +H  + YH  +E++  G I + YI T +QVAD LTK L
Sbjct:   82 ATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 197 bits (502), Expect = 1.690e-53
Identity = 111/297 (37.37%), Postives = 166/297 (55.89%), Query Frame = 1
Query:    1 GSSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPT--PGFKAELSDANL--YRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 876
            GSS  ++SE+K+ +  KY LTD GE++ +LGIKV RD+  +   LSQ ++I   LA+F    L     P+D  + LT +  P   A+++      YR  +G+L + A  TRP+++F +  L +   NP   H+EAV+R FRYL GT++  L+ GG    L  + D+D  +      ++TGY+  +    + WSSK Q  VT ST EAEY+A   A K+ MW+R LL E+  P   PT +  D+ + +    D   + R +H  + YH  +  V  GT+R+ Y  T+D  AD LTKAL
Sbjct: 1169 GSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGLEGYVDADGASQE-HRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRQLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIRYVVEAGTLRLIYCPTNDMTADTLTKAL 1464          
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Match: A0A8D8ANK3_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8ANK3_CULPI)

HSP 1 Score: 189 bits (479), Expect = 1.900e-53
Identity = 105/293 (35.84%), Postives = 164/293 (55.97%), Query Frame = 1
Query:   10 QAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNA 882
            +  ++  ++ L S+  +T  G+++  LGI++ +D     + L Q +FI   + +FG+D     K P+D         G   +L+D   Y S++G+L +++  TRP++A +V  L R    P    +   +R  RYL  T    L LGG  D  L  +SD+D+  D  D KS +GY+  LG A + W+SK QG V+TST+EAEY+AL  A +D +WLRSLLE++   Q  PT + EDN +C+++A      KR++H    YH  +E     TI++ Y  + D +ADILTK L +
Sbjct:  111 EEAINRIERELQSRLEITRLGDISLFLGIEIAKDTSG-VYALKQQAFINKLVKRFGMDGAKGSKFPMDP--GYFKVSGSSKKLADNQEYHSLIGSLLYLSTHTRPDIAASVGILSRKVSCPSQLDWTEARRILRYLISTADHRLVLGGAEDFKLVGYSDADWAGDSADRKSCSGYLFRLGGATVNWTSKKQGCVSTSTMEAEYVALSQAAQDAVWLRSLLEDINEKQLRPTVIFEDNRSCLDFAALDQQKKRSKHIDTRYHYTRELCLNNTIKLEYCASEDMIADILTKPLGS 400          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig958.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.250e-21599.66Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK5.430e-9198.56Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.160e-7041.75Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4S4K468_9APHY2.710e-5637.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0XAK1_9ASPA2.070e-5538.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GI70_9STRA3.090e-5434.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DK21_9STRA7.360e-5435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JMT1_9STRA1.130e-5335.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6PCF8_9APHY1.690e-5337.37Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A8D8ANK3_CULPI1.900e-5335.84Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig958contigH-akashiwo_Contig958:201312..202199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra75833
Model size888
Max annot lvl164328.Phyra75833|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.05e-48
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size888
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.54602-CDS-H-akashiwo_Contig958:201311..2021991681388058.54602-CDS-H-akashiwo_Contig958:201311..202199Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig958 201312..202199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig958.2.1prot_H-akashiwo_Contig958.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig958 201312..202199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig958.2.1

>prot_H-akashiwo_Contig958.2.1 ID=prot_H-akashiwo_Contig958.2.1|Name=mRNA_H-akashiwo_Contig958.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=296bp
GSSQAIVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSF
IKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLA
WVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLG
GDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTV
EAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLV
NKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAAN
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mRNA from alignment at H-akashiwo_Contig958:201312..202199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig958.2.1 ID=mRNA_H-akashiwo_Contig958.2.1|Name=mRNA_H-akashiwo_Contig958.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=888bp|location=Sequence derived from alignment at H-akashiwo_Contig958:201312..202199- (Heterosigma akashiwo CCMP452)
GGCAGCTCTCAAGCTATTGTCTCTGAGTTCAAGCAGTCTCTCGCGTCCAA ATACAGTCTCACTGATCAAGGAGAGCTCACCCAGATCCTTGGCATCAAGG TTGTTCGCGATAAGCGGAACAAGTGTTTTCATCTTTCTCAGACCTCCTTT ATCAAGGACGCGCTGGCTAAGTTCGGCCTCGACTATCTTCCCGCGTGTAA AACGCCTCTTGACCACACTGTGGATCTCACGCCTACTCCCGGGTTCAAAG CCGAGCTCTCTGACGCAAATCTGTATCGGTCCATGGTTGGGACGCTGGCC TGGGTTGCGAACTGGACAAGGCCGGAGCTTGCTTTCACAGTTCACAAGCT TCAGCGTACTCAAATTAATCCGGAGCCCAAACATTTTGAAGCAGTCCAGC GTGCGTTTCGGTACCTGAAAGGCACTCAGTCTGAGTCCTTGAGGCTAGGT GGTGATCTAGTGCTACGAGCTTTTTCCGATTCAGATTTCTGTAATGACCG TGTTGATGGGAAGTCAGTTACTGGCTATATTCTCTTTCTTGGTGATGCAC CTATTGTCTGGTCTTCAAAACTTCAGGGTGCTGTCACTACCTCTACTGTG GAAGCTGAATATTTGGCTCTTCGTTCAGCAGTTAAAGATATCATGTGGCT CCGCTCTCTTCTTGAAGAAATGGGGTGTCCCCAGCATGAACCCACTCCTG TTGTTGAGGACAACAGTGCCTGTGTTGAGTGGGCAAATGACATGTTGGTT AATAAAAGAAACAGGCACTTCCATGTGTCTTATCATCTTGCTAAGGAGCA AGTGAGCCTTGGTACTATCAGAATGTTTTATATCAAAACTCATGATCAAG TGGCTGATATTCTGACCAAGGCCCTGAATGCAGCGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig958:201312..202199-

>mRNA_H-akashiwo_Contig958.2.1 ID=mRNA_H-akashiwo_Contig958.2.1|Name=mRNA_H-akashiwo_Contig958.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=888bp|location=Sequence derived from alignment at H-akashiwo_Contig958:201312..202199- (Heterosigma akashiwo CCMP452)
GGCAGCTCTCAAGCTATTGTCTCTGAGTTCAAGCAGTCTCTCGCGTCCAA
ATACAGTCTCACTGATCAAGGAGAGCTCACCCAGATCCTTGGCATCAAGG
TTGTTCGCGATAAGCGGAACAAGTGTTTTCATCTTTCTCAGACCTCCTTT
ATCAAGGACGCGCTGGCTAAGTTCGGCCTCGACTATCTTCCCGCGTGTAA
AACGCCTCTTGACCACACTGTGGATCTCACGCCTACTCCCGGGTTCAAAG
CCGAGCTCTCTGACGCAAATCTGTATCGGTCCATGGTTGGGACGCTGGCC
TGGGTTGCGAACTGGACAAGGCCGGAGCTTGCTTTCACAGTTCACAAGCT
TCAGCGTACTCAAATTAATCCGGAGCCCAAACATTTTGAAGCAGTCCAGC
GTGCGTTTCGGTACCTGAAAGGCACTCAGTCTGAGTCCTTGAGGCTAGGT
GGTGATCTAGTGCTACGAGCTTTTTCCGATTCAGATTTCTGTAATGACCG
TGTTGATGGGAAGTCAGTTACTGGCTATATTCTCTTTCTTGGTGATGCAC
CTATTGTCTGGTCTTCAAAACTTCAGGGTGCTGTCACTACCTCTACTGTG
GAAGCTGAATATTTGGCTCTTCGTTCAGCAGTTAAAGATATCATGTGGCT
CCGCTCTCTTCTTGAAGAAATGGGGTGTCCCCAGCATGAACCCACTCCTG
TTGTTGAGGACAACAGTGCCTGTGTTGAGTGGGCAAATGACATGTTGGTT
AATAAAAGAAACAGGCACTTCCATGTGTCTTATCATCTTGCTAAGGAGCA
AGTGAGCCTTGGTACTATCAGAATGTTTTATATCAAAACTCATGATCAAG
TGGCTGATATTCTGACCAAGGCCCTGAATGCAGCGAAT
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