mRNA_H-akashiwo_Contig953.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig953.5.1
Unique NamemRNA_H-akashiwo_Contig953.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig953.5.1 vs. uniprot
Match: A0A6V1NTG5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NTG5_HETAK)

HSP 1 Score: 315 bits (808), Expect = 1.790e-108
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 2
Query:    2 NNSKMDEIDKIIAEEGHVYDQKASFAQWLMYFGVGLIVALLPNFLYLSYMFGMSLSQHAGQIALVGVVCAALLAQGYNGIANEKKIQLLAKREVPRSGGGEARRALHKACAAEAGVFALAAGNATFLGLFLTSAFYLVPRVVSAAAPAPASHLLSCVGAAAALAWPR 502
            NNSKMDEIDKIIAEEGHVYDQKASFAQWLMYFGVGLIVALLPNFLYLSYMFGMSLSQHAGQIALVGVVCAALLAQGYNGIANEKKIQLLAKREVPRSGGGEARRALHKACAAEAGVFALAAGNATFLGLFLTSAFYLVPRVVSAAAPAPASHLLSCVGAAAALAWPR
Sbjct:    1 NNSKMDEIDKIIAEEGHVYDQKASFAQWLMYFGVGLIVALLPNFLYLSYMFGMSLSQHAGQIALVGVVCAALLAQGYNGIANEKKIQLLAKREVPRSGGGEARRALHKACAAEAGVFALAAGNATFLGLFLTSAFYLVPRVVSAAAPAPASHLLSCVGAAAALAWPR 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig953.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1NTG5_HETAK1.790e-108100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig953contigH-akashiwo_Contig953:305517..313180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons6
Cds size489
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig953.5.1prot_H-akashiwo_Contig953.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig953 305530..313180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.563322-UTR-H-akashiwo_Contig953:305516..3055291681388057.563322-UTR-H-akashiwo_Contig953:305516..305529Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig953 305517..305529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388057.5748734-CDS-H-akashiwo_Contig953:305529..3055991681388057.5748734-CDS-H-akashiwo_Contig953:305529..305599Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig953 305530..305599 +
1681388057.5846736-CDS-H-akashiwo_Contig953:305796..3058851681388057.5846736-CDS-H-akashiwo_Contig953:305796..305885Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig953 305797..305885 +
1681388057.5950594-CDS-H-akashiwo_Contig953:306010..3061141681388057.5950594-CDS-H-akashiwo_Contig953:306010..306114Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig953 306011..306114 +
1681388057.605662-CDS-H-akashiwo_Contig953:306438..3065441681388057.605662-CDS-H-akashiwo_Contig953:306438..306544Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig953 306439..306544 +
1681388057.6169126-CDS-H-akashiwo_Contig953:312889..3129721681388057.6169126-CDS-H-akashiwo_Contig953:312889..312972Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig953 312890..312972 +
1681388057.6279008-CDS-H-akashiwo_Contig953:313143..3131801681388057.6279008-CDS-H-akashiwo_Contig953:313143..313180Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig953 313144..313180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig953.5.1

>prot_H-akashiwo_Contig953.5.1 ID=prot_H-akashiwo_Contig953.5.1|Name=mRNA_H-akashiwo_Contig953.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=163bp
MDEIDKIIAEEGHVYDQKASFAQWLMYFGVGLIVALLPNFLYLSYMFGMS
LSQHAGQIALVGVVCAALLAQGYNGIANEKKIQLLAKREVPRSGGGEARR
ALHKACAAEAGVFALAAGNATFLGLFLTSAFYLVPRVVSAAAPAPASHLL
SCVGAAAALAWPR
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mRNA from alignment at H-akashiwo_Contig953:305517..313180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig953.5.1 ID=mRNA_H-akashiwo_Contig953.5.1|Name=mRNA_H-akashiwo_Contig953.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7664bp|location=Sequence derived from alignment at H-akashiwo_Contig953:305517..313180+ (Heterosigma akashiwo CCMP452)
TAATAATTCAAAAATGGACGAGATTGATAAGATCATTGCCGAAGAAGGCC ACGTGTACGACCAGAAGGCTTCTTTCGCTCAATGTAAGCCACGAAAGCTT GCGAATCGTAGATTCTTCAGTTCGTCTCGTCATGAAGAAAATTCTTGTTT CTTCTGTCTCCTTTTCCCAATGATGAAATACATGTTATTTCCTTTATATA TCAAATCTTGGATCAAGCTAATTTCAATCTAACATAATATTTTTATGCGC TTCAACTGGTGGTGTGTATGTCGGTGATAGGGCTGATGTACTTTGGTGTT GGCCTGATTGTGGCCCTTCTCCCTAATTTCTTGTACCTTTCTTATATGTT TGGGATGAGCTTGTCTCAGGTAAACCATACAAATGTATACGTGGTCACCC AATACAGATTCTATTTGTCATATTTTCGCCATTCATTCAATTTTAATCAT AATGTTGAAACAGATATCAAGTATTCCTGTGCTTTTATTGACAGCATGCC GGTCAAATTGCTCTAGTGGGAGTTGTTTGTGCAGCTCTGCTTGCCCAAGG TTACAATGGGATTGCCAATGAGAAGAAGATCCAACTTCTGGCGAAGAGGT TTGTTGACTTTTGGAAATAGATCGCGGGTAATCCATGCAGCAGCCAAGAT AACCATTTCATGTGCGCTTGATGCCAAACCTTTTTGCTGACAGTACATGA TTCCAGAATCGCCACAACATTGAATTCGCCAGAGCAGGTTGGCTTAAGAT AATCAAGCAAGAAGAGCTCTTGGCGAAGATTATTGGCCCATCCTCTTTGC GAACAAGTAATTGACTTCCACAACTCACTTCCTTCCATAGACCAACTGGT GGCCATCGTCTAATCTGCTGTCTCCGCCCAAACGCAGGCCTCGCACAAGA ACAAGTTCCGCCGCCGCCACAGGGAGGTCCCGCGCTCTGGCGGCGGAGAG GCGCGGCGGGCGCTGCACAAAGCCTGTGCTGCGGAGGCGGGCGTGTTCGC GCTTGCTGCTGGCAACGCCACGTTTCTGGTGGGCCAGCGTTGGCTGCTGG AGCTGGCTGATATGGGGGCGGACACAGCAGAACCCACACAGCTGATTTGC CAGTGGTGGTCGTTGGGTCAACAGGGGGGGGGTAGGGTTGTTCTTTTGTG CCACCTCTTCGCTTCAGAGGGGGCGGATTGTGGGTGGGTATATACTGTAG TTAAAGCCAATGGTAGGGCTTTCAGATTATTTAGTCAACCTTGATTGGTT TATGATTTCTTCTTCTTCTTTATCATGAGGAGAAAAAGATGATTCTGGGG AGAAGTTATTTTCCTCTTATGCTTGGCTGCTGCTTCTCCTTAGTATAGCA CAACAAAGATATATTCGGAGCATCACCCCAGCAGCAGTAGAAAACAACCA CTGATAATGAACATCCAATAAAGCTACTTTGATCAAACCAGGCGTCACGC CTTTCTTCCGCCCTCAGGGCCTAAGCTGCCACTATGGCACAAGTAGAATA GTATAGAACTAGGGACTAGGATATTTGTAGACTTGAATGGTCACTTGCAT GACCCATGATTGGTGATGGGCACACGTTGACTGCACCGAATCCTCTGTGA AACGAGATTTCTTCTCTGCGGAAAAGCGGCAGCTCTTCTGTAAAATTTTT GAAAACGATACCCCTCTCTCGGCGAGCTTCTTTTCTTCCATCCAACAGTT TCGACAAATGGTGGACAAAAGTTCTCAGCAAACTTGACGACCTCCTTGCA ACAGCAAGCGGTCAAGAGGACAATCATCAGCAGTATTGTGGCCAGCGGCA CAATTCGAAATAGCAACGACAATGGCAAAAGCGGCATTTTTATCCTTCTT CGAAATGGCAACGACAATGGCAACAGCAGGAAGCGTTAATGGGCAAACGG CAATTTCGCACAAATGAGGAAGCATAGCATAGCGAGCAACTCCTCTTTCC AACTGTATAGTCGGTGTCAGGCTTAAGGGGGCATCGCTCCATGGGAACTT CGGCCAAATCGTTGACGCGGGCGCGAGCCGAGACTCGAACCCGGACCGCA ACTAAAAAGCAAGTCATGCGCGCTACTCACTAAGCAATTCGCGCTTGTAC TTCGATCAACGATTTAAAACATATGACGTTCAACCAAAAAAATCTAAACA GTAGCTCAGATTGTAGCCTGCATAGAAGGCTATAATTTGAGACATTCACC CGGATTTTCCCACACGTAGAACGTGTTTTTTTTCTCGGGGGATTTGGCCA TATTCTTGTATACTTTAGCCTGACACCGACTGTATAGCTGCACAACTTCA AAACAAGCACTCCAGACCTGCTACATCTGATTCAAGGCATGACCTGGGCT TCAAAAGACTTTGTAGTCGGCCCTAAAACAACCCCTTCAGGGTCCGTCCT AACGCTTGACGAACTTGACGGCGTCAAGCGATTTTCGATTTCGTCAACTT GGCGACCATTTCGTCAAGCCGAGCTTGTCAAGCAGCACACACTTTTGTCA ACCATCATCAAGGACCGTCGTCAAGTGCATTTTTGTTTCGTCAACTGAAG CCGCAACAAATGCGGGGGGGAAATAAAAAAGAATAAACACGATAACGATA AACCAATCAGTTTAATTTTTGGGGTCCTGTTATTATTGTCCTTCATTCTC AATTCTTTTTCTGCTTCTTCGATTCTGTATCTTTCTCTGCGCAGCAACAC GCACGCCACCTCAGCACCACAACCAGGAGCAGCAGCAGCAGCAGCAGCAG CACCACCACCACCACAACCAGACTCGCAGCCCACCCACCACCACCAAAAG AAGAACGAAAAAACGCAACAAAACAAATTCAAATTTTCAGCTTATAAATC TCGATACCATATTTCTTTTCAATTCAACTTTCAAGAATTAGGGACCTAGT TCGATATACTCACTGCTACAATGGGAGGTATACAGTTCAGTGGGGGGGGC GACGCTGCGGGGGGGGGGATAAAAAGAAGAAGATCAAAAAAATCTCGTCA AGCTTAGTGAAATTTCGTCAAGTGGGCTCGTCAAGTCGATTTTGATTTCG TCAAGTTGGGCCGAAAAAATCTCGTCAAGCTCAAAAAAATCTTAGGATGG GGTCTGCCATTAGTCTTGCCCAAGCCTGGACAAGATTTGAGTATGTAAGT ATCAGTAATCTTTGTGCTGATAAGACATACACTGGAGTCAGTCAACTTCA CACCTTCCGAGGAATGGGGGGAGCATTCTGATATTCCTCGCAAGTACCAT GCTGTATTGCAGATTAAAGTGAAGTTTCCGTTTGTTACCTAACTGACAAG AGACTGCAGTATTATTGGCAACTGCACTATCAACTTGGTTTCGGTTCACA AGCGAAGTGATCAAAGATACATAGAGCAAAGACCAATGGGACATTTGAAT TCAGCGATAACGGCCAACTTGTTATTTCTCCACTGATGGTCTCTCACCCA AGGTTCATATATACTGTACTGTAGTTAAAGCCAATGGTAGGGCTTTTAGA TTATTGAGTCAACCTTGGTTGGTTTATCATTTTTTCTTCTTCTTTATTAT GAGGAGAAAAAAATGATTCTGGTGGGGAGAAGTTATTTTCCTCTTATATG CTTGGCTGCTGCTTCCCCTTAGTTAGTATAGCACAACATAGATATATATT CGGAGCATCACCCCAGCAGCAGTAGAAAACAACCACTGACAATGAACATC CAATAAAGCTACTTTGATCAAACCAGGCGTCACGCCTTTCTTCCGCCCTC AGGGCCTAAGCTGCCACTATGGCAAGTAGAATAGTATAGAACTAGGGACA AGGATATTTGTAGACTTGAATGGTCACTTGCATGACCCATGATTGTCCAA TAGATACAGCAGCCCAAACGGTGTTGTCAGCATCGCTAATCCCGCAACCG CACAAACAGTCTTCGCAGTGTATAGTTGCCAACGCTCCAAGGTTGATATC ATGAGGTCACGGGTGCAATCCCGGCCTTCTGTTTTCGCGGACAAATGCAA CACGTAATCAGCACTGTGCTTCTTCACGAACAAAGTTGTAATGAACTGTG TCCTGTGCGCGATTGCAATTGAAGCTCGTGTTCGCATCAAAGGACGGGGG AAATGTTGTCGTGTGGGCATTGCGGGGATTTTTAAAACAGAAACGAAGGC CTCGGACGAACGCACAGCCATTTTTTACCCAAGAGAGTCTGTGTTTTGTA TCCAAAGTTCTGGATGTAGACCCTCACGATCAAAACCCAAGACAAATTTC TTGCGTCCAAATTCCTCGTTTGAACACAAAAAAAAGGCCGAAAATGATCG CACTTTTCTGCAAATCCACGTCCATGTCCGTCCAAAAAAAAACGCAACGC AGCATTCGATAATGCTGTTCTTTTTCCTTTTGTTTTTGTCCAATCAGAAT TTCCAGAATTCTGAATCAATATCCAATCAGCAATCAGTCGGTGTCAGGCC TCTATGGGAAATTCGGCCAAATTTTTCACGCCGAGACTCGAACCCGGATC AGAAGTAAAAAACGAGTCACGCGCTCTAGCCATATGGCAATTTGGACTTG TACTACCTCCAACGATTTAAAATCTATGACCTTCAACCAAAAATTCTAAA ACTGCCTCCTCGTCTAATATATATATCGCAACAAGTTCGTTGCAGACTGC ATTTTGAGCTATTTTCCCGGATTTTCCGACACGTACAACGCGCTTTTTTT TCTCAGGGGATTTGGCCAAATTCTTGCATACTTTAGCCTGACACCGACTC ATTGTGAACGGGAACTGCATTTGTCATTCAAAACTCTCCACTTCTGTCCT CCGACCGGTGCTGATGATGGCGGCCGCGGGTGACTGAGCCTCGAGGTCTG CAAAGCAAACGTGCAGATCAGCAGGCTCAAATGAGACCTGCAGGGGGGAA CATTTCTCTGACAGAGCTTGCCGCATTTTCCCTCTACAGGCCTCGAGGTC CGCAGTGCAAATATGCGGATTCAACAGGCTCAACCTAGACCCGCAGGGTG TGGGAATATTGATTCTGACAGAGGAGCCTAACACCACAATATTTTCACCA TGCGGGTCTTGAGACCCGCGGGGTTATAGCAGGGTGATAATGTTGGCCCT GAAATGACCCGACGCTGTCATATTTTCACCCTGCGGGCCTCAAGGTCCGC AGGCCAAATATGTGGATTCAGAAGGCTGATTTGAGACGCGCAAGGTTACA ATGTTGACCCTAACTGAGCATTCAACCCGAATATTTTCCCCCTGCGGGAT TCGAGACCCGCAGAGGGCAAATGTGCGGATTTATAAGGCTAATCTGAAAC CCGCAGGGTAAACCATTTTTGCATCAACAACTGAGCTGGCCGACCCCGCA TAAAATACATGCCGAGCCTCGAGGGCTGCAACGGAAATATGTGAATACAG TGACGCTATCTGAAATGGACAAGATTTCATTTTTAATCTATCCAATCTGA AACAATCAATGAACTTTTCTGATTGGCGCTAGGTAGGAGCGTTTATACAC TTGCACAAATATTTTTCCAGAATGTTCGCCATTCTGGATCGGGTTTGCGT TTGTCTTTGGAATTTGAAACTCCCGACGTGTTGGACGAACGAATTCAGCA CCTACTTGGTTCGTCGAAGGCCTTCGTTTGTCATTTAAAAATCCCCGTAT TGCTAATTCCGCAAGTCTGCAAACAGTCTTATAGCAGTACAGTTGTCAAC GCCCTAAGGTTGGTGTACCATGAGTCGCGAGTTCAATCCCAGCCTTCTGT TTCCGCGGGGAAAATGCAGCAAACATTTTGTGAAAAGCTTACCATAGTTT TTTTTTTTTTCTACATTCTAACTTGCAATGTGCTCCTCTCACACTCTGAG CCACAAGCACTGTCTTCCTGCAGGCCGCTTTGACATCTGAACAATTCGTC GGACAGCGCGTCGCTACTGACTGGCCCTGGAGCCCCAGCTGCACGAAGTC CTACATGTTCTACTGCCCCGTGGCCTCACCGCAGTCCAGTTCTCTTCCGT GGACGCTTCTTCCGACAACTCACGTCCATCGACGGGTGCTTCTTCTCCTT CCGCAGGTCGGGATGGTTCCCCCCCCAGGGTACATCCACCCCTCGTTTCG GAGCACGAGTGCTCCTTCCTAGGCCGTTTTTGTGATTTGTACGAGCTATA TGGAAGTAACTTCCATAAACCGGCCTCGTGAACAGTAAGTACATAGTGCT CGTGTTTCAATGCATGCCACTTGCATGGATCATCGACGGCCCACCGCTAA CGCGAGGACATTCCGCGCAGCCCTCAGCGAATTTCTGAAGAACTCTCACA AGTTTGTCGCAAGTTCCGAACCAGTCCCGAAGAATTTTCACTGAGTCAAC GCCGGCCAGCGATAGACCTAGTATCACCACCCACACCAGAGAACATGAAC ACCGAAAGTGCCTGTCAATGCTCAAGAGCGAAGGCCAAAGCCTGGTTTTG TTTTTGTGTGCTAACGTGTTTTAGCGGACTTATTGATTGTGATTGGTTGC TAATACAACCGGAAGTGTGTGCACTTGTGCTGTAATAGTAGGAGTCGTGG GGTGAACCTTCATTCTTCATTCAATAGTACATAACCCGGAATAGCTCAAT AGTTCGAAGGTTCGACTTCGAAGCATCAAGTGGCAGGATCGGATCCCGTC ATGTCAAGTTGGTGACAGTTGGATGTGCGCGCGATAGGTTCGCCGAACGA TGCTTGGTCGAGAACACGATCAATTGAAGCGATTAGCGGGGAATGTCGAC GTGAGACAAGAATGAACACGGACCAGGCGGCCCTAGACCCGGATAAGCGC CACGCCTGACGGAATTATCCCGCAAGTATCGACCGGTGCGATCTCGGCAC AGCCGCGAAAGTAACACCGGTCAAAGATATGGGGACTGACCGGCACCATG AAGAGCATGAAGCATGGTGTGTACTATGTAGACAAAAAAAAAAAAAAAAA AAAAACATACTTCTTATTCTTTTAACAATCTCTGGACTGTAGCAGCAGCA GAAGGAACAAGTTTTTTTTTTTTAACAATCTCCAGATCTACTATCCAGCA AAACTAAGGATCAAGCAACCAGCCTCGGCTGGCGGTGGCCTGCTATTGGC CGAAATTATTGAGTATTTTGCGGCGATGGCCTGGTGCACTGTAGTGTAGC TAATTTTTATGAGCCTTTTGTAATAATAATCTTTAACCTGCTGTTTCAGT AATGGCGGTGGATTCACTTGAAATAGGGCTGGATGTGTTTTCCGTTAAGC CCTTAATGATTCAGTAGTCATGTAAAACAACAACACAATGCAAGTGTCGC CCAAGTCTCCGTTGGGGGGAAACGGGTAACACAACACAACTCCGCCTTGC CTCCGCGCTCTCCCTCCCCCCAGGGTCTGTTCCTGACCTCCGCCTTCTAC CTGGTGCCCCGGGTGGTCTCGGCGGCGGCGCCGGCCCCCGCCTCGCACCT GCTGAGGTGAGCTGGGACCAGGCCGTCCCATCTGCGATTCGAACGTGTTT TCCTGGCGAGTGTGTTTCGGTCGCCAAGGTCCCCCGCGTGGGGATAACGG GCAACGGCCCGAGCTCTGTGTTTCCTCCCTCGCCCCGCGCCGAAGCCGTG GCCCGCCCCCCGCCCGCCGCCCCGCAGCTGCGTGGGCGCCGCCGCCGCGC TGGCCTGGCCGCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig953:305517..313180+

>mRNA_H-akashiwo_Contig953.5.1 ID=mRNA_H-akashiwo_Contig953.5.1|Name=mRNA_H-akashiwo_Contig953.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig953:305517..313180+ (Heterosigma akashiwo CCMP452)
ATGGACGAGATTGATAAGATCATTGCCGAAGAAGGCCACGTGTACGACCA
GAAGGCTTCTTTCGCTCAATGGCTGATGTACTTTGGTGTTGGCCTGATTG
TGGCCCTTCTCCCTAATTTCTTGTACCTTTCTTATATGTTTGGGATGAGC
TTGTCTCAGCATGCCGGTCAAATTGCTCTAGTGGGAGTTGTTTGTGCAGC
TCTGCTTGCCCAAGGTTACAATGGGATTGCCAATGAGAAGAAGATCCAAC
TTCTGGCGAAGAGGGAGGTCCCGCGCTCTGGCGGCGGAGAGGCGCGGCGG
GCGCTGCACAAAGCCTGTGCTGCGGAGGCGGGCGTGTTCGCGCTTGCTGC
TGGCAACGCCACGTTTCTGGGTCTGTTCCTGACCTCCGCCTTCTACCTGG
TGCCCCGGGTGGTCTCGGCGGCGGCGCCGGCCCCCGCCTCGCACCTGCTG
AGCTGCGTGGGCGCCGCCGCCGCGCTGGCCTGGCCGCGC
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