mRNA_H-akashiwo_Contig925.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig925.4.1
Unique NamemRNA_H-akashiwo_Contig925.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 626 bits (1615), Expect = 9.900e-225
Identity = 301/341 (88.27%), Postives = 326/341 (95.60%), Query Frame = 1
Query:  160 MELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGGDLLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFD 1182
            MELHDHL SLGF+RSGHESCLYI R+GG ELMVAVYVDDLV+SGSS A+VS+FK+SLASKY LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL+KFGLDYLPAC TP+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQRTQ NPE KHFEA + AFRYLKGTQSESLRLGGDL+LRAFSDSDFC+DR+DGKSVTGY+LFLGDAPI+WSSKLQGAVTTSTVEAEYLALRS+VKDIMWLR LL ++GCPQ EPTPVVEDNSAC+EWAND+LV+K+NRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADI TKALNA NF+
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 341          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 432 bits (1110), Expect = 3.010e-149
Identity = 204/235 (86.81%), Postives = 224/235 (95.32%), Query Frame = 1
Query:    1 DSLDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYL 705
            DSLDISTAFLNG MT+DVYV+QPP +VDP+HP++VWKLNKALYGL+QSPR+WYMELHDHL SLGF+RSGHESCLYI R+GG ELMVAVYVDDLV+SGSS A+VS+FK+SLASKY+LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL+KFGLDYLPAC TP+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQRTQ NPE KHFEA + AFRYL
Sbjct:   34 DSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 342 bits (876), Expect = 3.310e-105
Identity = 172/394 (43.65%), Postives = 257/394 (65.23%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLY--IRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELS--DANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGGDLLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAEN 1176
            +DI TAFL+G + ED+Y+KQP G+  P    +V KL K+LYGL+Q+P+ WY  L+  LL  G+ R+G++SC+Y  +   GG+ L ++VYVDD+V++ S  + +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P A    A+    RYL  T+ + + LGG L L A++D+DFCS+R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR++V D+MWL+ LL  LG  +Q   P+ EDN ACI WAND  VSK  RH HVSYH  KE V    I + ++ T  Q+AD+FTK L+  N
Sbjct:  594 MDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTL-ISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A2N9GBV9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GBV9_FAGSY)

HSP 1 Score: 278 bits (710), Expect = 8.150e-85
Identity = 146/393 (37.15%), Postives = 228/393 (58.02%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGGD--LLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 1179
            +D+  AFLNGD+TE+VY++ PPG+ D  +PD+V  L +ALYGL+Q+PR W+ +    +   GF  S H++ L+IRR     +++ +YVDD++++G   + +SDFK  L  ++++ D G L+  LG++V  D     +YLSQ  +  D LS+ GL      +TP++    LTP  G    LSDA +YR +VG+L ++   TRP++A  VH + +    P + H+ A     RY+KGT    L       L L A+SD+D+  D  D +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL  +  +++ LR LL D+G     PT +  DN + I+ A++ +  ++ +H  +  HL +  +S G + +  + + DQ ADIFTK      F
Sbjct:  166 MDVKNAFLNGDLTEEVYMQAPPGYSD--YPDKVCLLRRALYGLKQAPRAWFAKFSSIVHQFGFSSSSHDTTLFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRAGLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLDLCAYSDADWAGDPTDRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRALADTTSELLALRWLLEDMGVTHSSPTVIHCDNRSAIQIAHNDVFHERTKHIEIDCHLVRHHLSAGILHLLPVSSSDQTADIFTKTFPPGRF 551          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A2N9GDZ1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GDZ1_FAGSY)

HSP 1 Score: 276 bits (706), Expect = 8.540e-85
Identity = 146/393 (37.15%), Postives = 227/393 (57.76%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGGD--LLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 1179
            +D+  AFLNGD+TE+VY++ PPG+ D   PD+V  L +ALYGL+Q+PR W+ +    +   GF  S H++ L+IRR     +++ +YVDD++++G   + +SDFK  L  ++++ D G L+  LG++V  D     +YLSQ  +  D LS+ GL      +TP++    LTP  G    LSDA +YR +VG+L ++   TRP++A  VH + +    P + H+ A     RY+KGT    L       L L A+SD+D+  D  D +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL  +  +++ LR LL D+G     PT +  DN + I+ A++ +  ++ +H  +  HL +  +S G + +  + + DQ ADIFTK      F
Sbjct:  115 MDVKNAFLNGDLTEEVYMQAPPGYSD--CPDKVCLLRRALYGLKQAPRAWFAKFSSIVHQFGFSSSSHDTALFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRAGLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLDLCAYSDADWAGDPTDRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRALADTTSELLALRWLLEDMGVTHSSPTVIHCDNRSAIQIAHNDVFHERTKHIEIDCHLVRHHLSAGILHLLPVSSSDQTADIFTKTFPPGRF 500          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A314KJ27_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314KJ27_NICAT)

HSP 1 Score: 271 bits (692), Expect = 3.790e-84
Identity = 145/394 (36.80%), Postives = 231/394 (58.63%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRL--GGDLLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFD 1182
            +D+ +AFLNG + E++YV+QP GFV     D+V++L+KALYGL+Q+PR WY  + D+LL L F++S  ES LY+++  G  L+V++YVDDL+++GSS  L+ DFK+ +   +++TD G +T  LG+++  +K     ++ Q  + K+ L KFG++   A  TPM+    L    G  AE  D + +RS++G L ++   TRP++ + V  L R    P   H +AA+   RY+KGT +  ++     ++ L  +SDSD+     D KS +GY   LG     W SK Q  V  ST +AE++A  ++V   +WLR +L DL    ++ T V  DN A I  +++ +   K +HF++     +E    G I + + KT ++VADIF K L    F+
Sbjct:    1 MDVKSAFLNGILKEEIYVEQPEGFVVEGKEDKVYRLHKALYGLKQAPRAWYSRIDDYLLGLNFEKSLSESTLYVKQHSGDILVVSLYVDDLLITGSSTKLIDDFKQDMMQAFEMTDLGLVTYFLGMEIKPEKDE--VFICQNKYAKEILKKFGMENCKAMNTPMNQKEKLRKDDG--AEKVDESYFRSIIGCLMYLTA-TRPDILYAVSVLSRFMHCPSEVHLKAAKRVVRYIKGTINYGVKFHRSRNMELFGYSDSDWGGSLDDMKSTSGYCFSLGSRMFSWCSKKQDTVAQSTAQAEFVAATAAVNQALWLREILVDLHMEPRKSTEVFVDNQAAIAISHNPVFHGKTKHFNIKLFFLREVQKDGAITLVYCKTEEEVADIFKKPLPVSKFE 389          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A2N9J2W0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J2W0_FAGSY)

HSP 1 Score: 273 bits (697), Expect = 4.070e-84
Identity = 144/393 (36.64%), Postives = 226/393 (57.51%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGGD--LLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 1179
            +D+  AFLNGD+TE+VY++ PPG+ D   PD+V  L +ALYGL+Q+PR W+ +    +   GF  S H++ L+IRR     +++ +YVDD++++G   + +SDFK  L  ++++ D G L+  LG++V  D     +YLSQ  +  D LS+ GL      +TP++    LTP  G    L DA +YR +VG+L ++   TRP++A  VH + +    P + H+ A     RY+KGT    L       L L A+SD+D+  D  + +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL  +  +++ LR LL D+G     PT +  DN + I+ A++ +  ++ +H  +  HL +  +S G + +  + + DQ ADIFTK      F
Sbjct:   59 MDVKNAFLNGDLTEEVYMQAPPGYSD--CPDKVCLLRRALYGLKQAPRAWFAKFSSIVHQFGFSSSSHDTALFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRAGLTDTKVVSTPLEMNARLTPLDG--TPLRDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLNLCAYSDADWAGDPTNRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRALADTTSELLALRWLLEDMGVTHSSPTVIHCDNHSAIQIAHNDVFHERTKHIEIDCHLVRHHLSAGILHLLPVSSSDQTADIFTKTFPPGRF 444          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A8J5YYQ4_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YYQ4_9ROSI)

HSP 1 Score: 272 bits (695), Expect = 4.210e-84
Identity = 150/394 (38.07%), Postives = 232/394 (58.88%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGR-ELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGG--DLLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 1179
            LD+ +AFLNG + E++Y+ QP GFV       V+KL KALYGL+Q+PR WY  +  +LLSLGF+RS  E  LY++++    +L+V++YVDDL+V+G    +++DFK  +   ++++D G++   LG++V   + +   +L Q +F    LSKF ++     +TPM     L+   G++ ++S+A+ YRS+VG L ++   TRP++ ++V  L R       +H +AA+   RY+KGT S  L+     DL L  ++DSD+   + D KS +GY   LG A   WSSK Q  V  ST EAEY+A   +V   +WLR +LADL   Q+E T +  DN + +  A + +   + +HF +  H+ +E      I +    + DQVADIFTKAL    F
Sbjct:   30 LDVKSAFLNGFLEEEIYIDQPQGFVVSGKEQMVYKLKKALYGLKQAPRAWYTRIDSYLLSLGFERSISEPTLYVKKKQAETQLIVSLYVDDLLVTGGDRNMLADFKAKMKDTFEMSDLGQMIYFLGMEV--QQTHSGIFLGQKTFAAKILSKFSMENCKPTSTPMAVGAKLSGQEGYE-QVSEAD-YRSLVGCLLYLTA-TRPDIMYSVSVLSRFMHCCNKQHLQAAKRVLRYIKGTLSYGLKFSRNEDLKLIGYTDSDWAGSKDDMKSTSGYAFTLGSAMFCWSSKKQSIVAQSTAEAEYVAAAGAVNQAIWLRKILADLNLYQKEATEIFCDNKSAVAIAKNPIFHGRTKHFSIKLHVVREMEQAREIELVHCNSEDQVADIFTKALCTSRF 418          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 287 bits (735), Expect = 1.550e-83
Identity = 151/393 (38.42%), Postives = 234/393 (59.54%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGG--DLLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 1179
            +D+ +AFLNG + E+VY++QP G+      D+V +L KALYGL+Q+PR W + +  +   + F +  +E  LYI+ +G   L+V +YVDDL+ +G++P++  +FK+ +  ++++TD G +   LGI+V +   N+  +++Q S+ KD L KF LD      TPM+  + L+     + E  D  +Y+S+VG+L ++   TRP++ + V  + R    P   H + A+   RY+KGT S  L      D  L  +SDSD+  D  D KS +G+V ++GD    W SK Q  VT ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A + +   +++H H  YH  +E +S   ++M ++KTHDQVADIFTK L  E F
Sbjct:  942 MDVKSAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQAPRAWNVRIDKYFKEVNFIKCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEVKQG--NEGIFITQESYAKDLLKKFKLDDANPVGTPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 1329          
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Match: A0A2K3M5H6_TRIPR (Retrotransposon protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M5H6_TRIPR)

HSP 1 Score: 271 bits (694), Expect = 2.690e-83
Identity = 146/394 (37.06%), Postives = 232/394 (58.88%), Query Frame = 1
Query:    7 LDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRL--GGDLLLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFD 1182
            LD+ +AFLNG++ E+VYVKQP GF       +V+KL+KALYGL+Q+PR W  ++  + L  GF +S  E  LY++R G   LMV +YVDDL+ +G++P +V  FK ++  +Y++TD G +   LGI+V + K     +++Q  +I D L KF L+     +TPM     L    G  AE +D  +YRS+VG+L ++ N TRP++  +V  + R    P   HF AA+   RYL+GT+   ++     D  L  ++DSD+     D KS + YV  LG   I WSSK Q +V  S+ EAEY++   + ++ +WLR +L+DL    ++PTP+  DN + I  + + +   +++H  + ++  ++ V    I + +IKT  Q AD+ TKA++ E  +
Sbjct:   92 LDVKSAFLNGELEEEVYVKQPQGFEAKGKERKVYKLHKALYGLKQAPRAWNSKIDAYFLQNGFVKSPSEPSLYVKRNGANFLMVCLYVDDLIYAGTNPNMVQSFKEAMMKEYEMTDLGLMKYFLGIQVKQTKGE--IFITQEKYIHDLLKKFRLESCKPVSTPMAMNEKLQLNDG--AEQADPKVYRSLVGSLIYLTN-TRPDIVHSVSLVSRFMNEPSKLHFAAAKRILRYLQGTKKLGIKYVKEEDNKLVGYTDSDWAGSFDDRKSTSAYVFCLGSKAISWSSKKQNSVALSSAEAEYISANEATREAVWLRRILSDLQQKVEDPTPIFCDNQSAISMSKNPVFHGRSKHIELRHNYIRDMVQKKEIYLEYIKTTKQPADVLTKAVSLEKLE 480          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig925.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK9.900e-22588.27Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK3.010e-14986.81Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK3.310e-10543.65Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A2N9GBV9_FAGSY8.150e-8537.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GDZ1_FAGSY8.540e-8537.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A314KJ27_NICAT3.790e-8436.80Retrovirus-related pol polyprotein from transposon... [more]
A0A2N9J2W0_FAGSY4.070e-8436.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5YYQ4_9ROSI4.210e-8438.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151RPT4_CAJCA1.550e-8338.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3M5H6_TRIPR2.690e-8337.06Retrotransposon protein n=1 Tax=Trifolium pratense... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig925contigH-akashiwo_Contig925:245712..246893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1182
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.7e-79
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size1182
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.0285478-CDS-H-akashiwo_Contig925:245711..2468931681388045.0285478-CDS-H-akashiwo_Contig925:245711..246893Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig925 245712..246893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig925.4.1prot_H-akashiwo_Contig925.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig925 245712..246893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig925.4.1

>prot_H-akashiwo_Contig925.4.1 ID=prot_H-akashiwo_Contig925.4.1|Name=mRNA_H-akashiwo_Contig925.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=394bp
DSLDISTAFLNGDMTEDVYVKQPPGFVDPEHPDRVWKLNKALYGLRQSPR
IWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSP
ALVSDFKRSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDA
LSKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVAN
WTRPELAFTVHKLQRTQCNPEAKHFEAAEIAFRYLKGTQSESLRLGGDLL
LRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEY
LALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKN
RHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFD
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mRNA from alignment at H-akashiwo_Contig925:245712..246893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig925.4.1 ID=mRNA_H-akashiwo_Contig925.4.1|Name=mRNA_H-akashiwo_Contig925.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-akashiwo_Contig925:245712..246893+ (Heterosigma akashiwo CCMP452)
GACTCTCTGGACATTAGTACGGCTTTTCTGAATGGGGATATGACCGAGGA CGTCTACGTAAAGCAGCCTCCGGGCTTTGTGGATCCTGAGCATCCTGATA GAGTTTGGAAGCTGAACAAGGCGCTGTACGGGTTGCGCCAAAGTCCACGC ATCTGGTACATGGAGTTGCATGATCATCTCTTGTCTTTGGGTTTTCAGCG TAGTGGGCATGAATCCTGCTTGTACATTCGTCGCGAAGGAGGCCGTGAGC TGATGGTGGCTGTGTACGTTGATGATCTTGTCGTTAGTGGCAGCTCTCCC GCCCTTGTTTCTGATTTCAAACGGTCTCTTGCGTCCAAGTACGATCTCAC CGATCAGGGGGAGCTTACTCAAATCCTTGGCATCAAAGTTGTTCGAGACA AGCGCAACAAGTGCTTCTATCTCTCCCAAACCTCTTTCATTAAGGATGCG CTCTCCAAGTTCGGGCTCGATTACCTGCCTGCGTGCGCGACTCCGATGGA TCACACCGTTGATCTGACGCCTACCCCTGGCTTCAAGGCTGAACTCTCTG ACGCGAACATGTATAGGTCCATGGTTGGCACGTTGGCCTGGGTTGCAAAC TGGACGAGGCCGGAGCTGGCTTTTACGGTTCACAAGCTTCAGCGCACTCA GTGTAACCCAGAGGCCAAGCATTTCGAGGCGGCCGAGATTGCGTTTCGTT ATCTTAAAGGCACTCAGTCTGAGTCGTTGCGACTAGGTGGCGATCTGCTG CTGCGTGCGTTCTCTGATTCGGATTTCTGCTCTGACCGTATCGATGGCAA GTCTGTCACAGGGTACGTTCTGTTTCTGGGTGACGCGCCTATACTTTGGT CCTCAAAGCTTCAGGGGGCAGTCACCACCTCCACAGTGGAAGCAGAGTAT CTCGCTCTTCGGTCGTCTGTCAAAGACATTATGTGGCTCCGGCATCTTCT TGCTGATCTTGGGTGTCCCCAGCAAGAGCCTACTCCTGTTGTAGAGGACA ATAGTGCCTGCATTGAATGGGCGAATGACTTGTTGGTCTCCAAAAAGAAT AGGCATTTCCATGTATCTTACCATCTTGCTAAGGAGCAGGTGAGCCTTGG GACTATCAGGATGTTCTTCATTAAGACTCATGACCAGGTGGCTGATATTT TCACCAAAGCTCTCAATGCAGAAAATTTTGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig925:245712..246893+

>mRNA_H-akashiwo_Contig925.4.1 ID=mRNA_H-akashiwo_Contig925.4.1|Name=mRNA_H-akashiwo_Contig925.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1182bp|location=Sequence derived from alignment at H-akashiwo_Contig925:245712..246893+ (Heterosigma akashiwo CCMP452)
GACTCTCTGGACATTAGTACGGCTTTTCTGAATGGGGATATGACCGAGGA
CGTCTACGTAAAGCAGCCTCCGGGCTTTGTGGATCCTGAGCATCCTGATA
GAGTTTGGAAGCTGAACAAGGCGCTGTACGGGTTGCGCCAAAGTCCACGC
ATCTGGTACATGGAGTTGCATGATCATCTCTTGTCTTTGGGTTTTCAGCG
TAGTGGGCATGAATCCTGCTTGTACATTCGTCGCGAAGGAGGCCGTGAGC
TGATGGTGGCTGTGTACGTTGATGATCTTGTCGTTAGTGGCAGCTCTCCC
GCCCTTGTTTCTGATTTCAAACGGTCTCTTGCGTCCAAGTACGATCTCAC
CGATCAGGGGGAGCTTACTCAAATCCTTGGCATCAAAGTTGTTCGAGACA
AGCGCAACAAGTGCTTCTATCTCTCCCAAACCTCTTTCATTAAGGATGCG
CTCTCCAAGTTCGGGCTCGATTACCTGCCTGCGTGCGCGACTCCGATGGA
TCACACCGTTGATCTGACGCCTACCCCTGGCTTCAAGGCTGAACTCTCTG
ACGCGAACATGTATAGGTCCATGGTTGGCACGTTGGCCTGGGTTGCAAAC
TGGACGAGGCCGGAGCTGGCTTTTACGGTTCACAAGCTTCAGCGCACTCA
GTGTAACCCAGAGGCCAAGCATTTCGAGGCGGCCGAGATTGCGTTTCGTT
ATCTTAAAGGCACTCAGTCTGAGTCGTTGCGACTAGGTGGCGATCTGCTG
CTGCGTGCGTTCTCTGATTCGGATTTCTGCTCTGACCGTATCGATGGCAA
GTCTGTCACAGGGTACGTTCTGTTTCTGGGTGACGCGCCTATACTTTGGT
CCTCAAAGCTTCAGGGGGCAGTCACCACCTCCACAGTGGAAGCAGAGTAT
CTCGCTCTTCGGTCGTCTGTCAAAGACATTATGTGGCTCCGGCATCTTCT
TGCTGATCTTGGGTGTCCCCAGCAAGAGCCTACTCCTGTTGTAGAGGACA
ATAGTGCCTGCATTGAATGGGCGAATGACTTGTTGGTCTCCAAAAAGAAT
AGGCATTTCCATGTATCTTACCATCTTGCTAAGGAGCAGGTGAGCCTTGG
GACTATCAGGATGTTCTTCATTAAGACTCATGACCAGGTGGCTGATATTT
TCACCAAAGCTCTCAATGCAGAAAATTTTGAC
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