mRNA_H-akashiwo_Contig9.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.6.1
Unique NamemRNA_H-akashiwo_Contig9.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.6.1 vs. uniprot
Match: A0A7S4DJE8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJE8_HETAK)

HSP 1 Score: 427 bits (1097), Expect = 3.200e-143
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 
Query:  271 MSYRPVPDDQVEPNSFGTDFLDMTGDDLDLGILQEIGGLPMSGQSSTMGMPQHPTTVPPTKVQNTPAINSQQNPSSQGHLTLGTFQNGRVEAVALQSLSIPAGNGPLNTLQAVHRGGHQIVALNGQQGLLQIVKPEYLQQQQQXXXXXXXXXXXXPAPSSQNQATFIDASDGQYQLNADQVAKRQRIEDELTLEQKVLASKERNRENARNTRLRKKLYIEKLKAQVDELQAAQERREREERVR 999
            MSYRPVPDDQVEPNSFGTDFLDMTGDDLDLGILQEIGGLPMSGQSSTMGMPQHPTTVPPTKVQNTPAINSQQNPSSQGHLTLGTFQNGRVEAVALQSLSIPAGNGPLNTLQAVHRGGHQIVALNGQQGLLQIVKPEYLQQQQQXXXXXXXXXXXXPAPSSQNQATFIDASDGQYQLNADQVAKRQRIEDELTLEQKVLASKERNRENARNTRLRKKLYIEKLKAQVDELQAAQERREREERVR
Sbjct:    1 MSYRPVPDDQVEPNSFGTDFLDMTGDDLDLGILQEIGGLPMSGQSSTMGMPQHPTTVPPTKVQNTPAINSQQNPSSQGHLTLGTFQNGRVEAVALQSLSIPAGNGPLNTLQAVHRGGHQIVALNGQQGLLQIVKPEYLQQQQQXXXXXXXXXXXXPAPSSQNQATFIDASDGQYQLNADQVAKRQRIEDELTLEQKVLASKERNRENARNTRLRKKLYIEKLKAQVDELQAAQERREREERVR 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DJE8_HETAK3.200e-143100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:297801..299112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps25911
PFAMsPAS_9
Model size999
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000483
EggNOG OGs2CY5M@1|root,2S26N@2759|Eukaryota,2XA72@2836|Bacillariophyta
Descriptionbasic region leucin zipper
Cds size999
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.007633-CDS-H-akashiwo_Contig9:297800..2986781681388029.007633-CDS-H-akashiwo_Contig9:297800..298678Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 297801..298678 +
1681388029.019054-CDS-H-akashiwo_Contig9:298991..2991121681388029.019054-CDS-H-akashiwo_Contig9:298991..299112Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 298992..299112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.6.1prot_H-akashiwo_Contig9.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 297801..299112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.6.1

>prot_H-akashiwo_Contig9.6.1 ID=prot_H-akashiwo_Contig9.6.1|Name=mRNA_H-akashiwo_Contig9.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=333bp
SVSCQLSSDWPPLLKQRQQLPFVRASLMNQLTMDGNFPPTNGYQFVISNG
GDAMAAYQPQLLVQQQQPQQHNNPHANTIGSLQSLGNLKNMSYRPVPDDQ
VEPNSFGTDFLDMTGDDLDLGILQEIGGLPMSGQSSTMGMPQHPTTVPPT
KVQNTPAINSQQNPSSQGHLTLGTFQNGRVEAVALQSLSIPAGNGPLNTL
QAVHRGGHQIVALNGQQGLLQIVKPEYLQQQQQIQQQQQIQQPQQPAPSS
QNQATFIDASDGQYQLNADQVAKRQRIEDELTLEQKVLASKERNRENARN
TRLRKKLYIEKLKAQVDELQAAQERREREERVR
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mRNA from alignment at H-akashiwo_Contig9:297801..299112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.6.1 ID=mRNA_H-akashiwo_Contig9.6.1|Name=mRNA_H-akashiwo_Contig9.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-akashiwo_Contig9:297801..299112+ (Heterosigma akashiwo CCMP452)
TCGGTTTCTTGCCAACTGTCAAGTGATTGGCCTCCTCTCTTGAAGCAGCG
GCAGCAGTTGCCCTTTGTTAGGGCATCGCTCATGAATCAGCTGACCATGG
ATGGGAATTTCCCACCAACAAATGGTTACCAATTTGTAATAAGTAACGGA
GGAGATGCGATGGCCGCATACCAGCCGCAGCTGTTAGTCCAGCAACAGCA
GCCGCAGCAACATAATAATCCTCATGCGAATACGATAGGATCTTTGCAGT
CTCTTGGAAACCTGAAGAATATGAGCTACAGGCCAGTGCCAGACGATCAG
GTTGAGCCCAACTCTTTCGGCACTGATTTTCTCGACATGACAGGGGATGA
TCTTGACCTTGGAATACTACAGGAAATAGGGGGGCTTCCAATGAGTGGGC
AAAGTTCAACAATGGGCATGCCACAACATCCTACTACTGTTCCTCCTACA
AAGGTTCAAAATACTCCTGCCATAAACTCTCAACAAAATCCTTCATCACA
AGGACACTTAACCCTAGGCACTTTCCAGAATGGGCGAGTAGAAGCCGTCG
CTCTTCAGAGTCTTTCGATCCCCGCAGGAAATGGACCTCTCAATACGCTG
CAAGCGGTTCATCGCGGTGGACACCAAATAGTAGCCCTCAACGGCCAACA
AGGACTGCTGCAAATAGTCAAACCCGAATACTTACAACAGCAGCAACAAA
TCCAACAGCAGCAACAAATCCAACAGCCACAACAACCGGCCCCTTCGTCA
CAAAATCAAGCTACCTTCATCGACGCTTCAGATGGACAATACCAACTAAA
TGCAGATCAGGTGGCCAAAAGGCAGAGAATCGAAGACGAATTGACGCTCG
AGCAAAAAGTCCTAGCGTCAAAAGAAAGGTAAGGTTGTGAAGAATCTGTG
GTTCATAACTCCTTCTATTCATACCATTTTGTACATTGAACTGCGTGTAT
GGTCCATATGTTGCTTTAATGCAACCTTCTCTGTTATCATGGTAAGTGAT
TATTCTTTTATTGCCCACTGGTCAACTGAACATGATGACGGGCATGATGA
GGTTGTTATGAGGATATTTGATGGTGTCATGTTGTGAAGGGCACTTTTCT
CTCTGCTCGCTCCTCATTTGTGACAACCCACCGACCTCACCCTTCCTGCA
CCCCCCTTCCCGCCCCCTTGCCCAATCTCACCTTTCCGCAGGAACCGCGA
GAACGCCCGCAACACCCGGCTGCGCAAGAAGCTGTACATCGAGAAGCTGA
AGGCGCAGGTGGACGAGCTGCAGGCCGCGCAGGAGCGGCGCGAGCGCGAG
GAGCGCGTGCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:297801..299112+

>mRNA_H-akashiwo_Contig9.6.1 ID=mRNA_H-akashiwo_Contig9.6.1|Name=mRNA_H-akashiwo_Contig9.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=999bp|location=Sequence derived from alignment at H-akashiwo_Contig9:297801..299112+ (Heterosigma akashiwo CCMP452)
TCGGTTTCTTGCCAACTGTCAAGTGATTGGCCTCCTCTCTTGAAGCAGCG
GCAGCAGTTGCCCTTTGTTAGGGCATCGCTCATGAATCAGCTGACCATGG
ATGGGAATTTCCCACCAACAAATGGTTACCAATTTGTAATAAGTAACGGA
GGAGATGCGATGGCCGCATACCAGCCGCAGCTGTTAGTCCAGCAACAGCA
GCCGCAGCAACATAATAATCCTCATGCGAATACGATAGGATCTTTGCAGT
CTCTTGGAAACCTGAAGAATATGAGCTACAGGCCAGTGCCAGACGATCAG
GTTGAGCCCAACTCTTTCGGCACTGATTTTCTCGACATGACAGGGGATGA
TCTTGACCTTGGAATACTACAGGAAATAGGGGGGCTTCCAATGAGTGGGC
AAAGTTCAACAATGGGCATGCCACAACATCCTACTACTGTTCCTCCTACA
AAGGTTCAAAATACTCCTGCCATAAACTCTCAACAAAATCCTTCATCACA
AGGACACTTAACCCTAGGCACTTTCCAGAATGGGCGAGTAGAAGCCGTCG
CTCTTCAGAGTCTTTCGATCCCCGCAGGAAATGGACCTCTCAATACGCTG
CAAGCGGTTCATCGCGGTGGACACCAAATAGTAGCCCTCAACGGCCAACA
AGGACTGCTGCAAATAGTCAAACCCGAATACTTACAACAGCAGCAACAAA
TCCAACAGCAGCAACAAATCCAACAGCCACAACAACCGGCCCCTTCGTCA
CAAAATCAAGCTACCTTCATCGACGCTTCAGATGGACAATACCAACTAAA
TGCAGATCAGGTGGCCAAAAGGCAGAGAATCGAAGACGAATTGACGCTCG
AGCAAAAAGTCCTAGCGTCAAAAGAAAGGAACCGCGAGAACGCCCGCAAC
ACCCGGCTGCGCAAGAAGCTGTACATCGAGAAGCTGAAGGCGCAGGTGGA
CGAGCTGCAGGCCGCGCAGGAGCGGCGCGAGCGCGAGGAGCGCGTGCGC
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