mRNA_H-akashiwo_Contig9.53.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.53.1
Unique NamemRNA_H-akashiwo_Contig9.53.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A7S4D679_HETAK (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D679_HETAK)

HSP 1 Score: 115 bits (288), Expect = 8.490e-30
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:    3 AMPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            AMPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL
Sbjct:  116 AMPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 165
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A0P1A445_PLAHL (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A445_PLAHL)

HSP 1 Score: 61.6 bits (148), Expect = 8.450e-10
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP +R+FDPETAHNIAV    +GL P+D   +P  L+V   GLKF+NPL
Sbjct:   64 MPVIRIFDPETAHNIAVQCARFGLIPKDPEPDPKLLHVHALGLKFSNPL 112
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: D0MUE3_PHYIT (Dihydroorotate dehydrogenase (quinone), mitochondrial n=5 Tax=Phytophthora TaxID=4783 RepID=D0MUE3_PHYIT)

HSP 1 Score: 59.3 bits (142), Expect = 5.540e-9
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP VRMF+PETAH IAV    +GL P+D   +P  L+V   GL+F NPL
Sbjct:   68 MPVVRMFEPETAHKIAVQCARFGLTPKDPETDPELLHVQVLGLEFTNPL 116
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A8K1C5T7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5T7_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 5.540e-9
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP VR+FDPETAH IAV TTA GL P D   +P +L V   G +F NPL
Sbjct:   78 MPIVRLFDPETAHVIAVKTTALGLAPVDTEVDPESLRVKVLGREFPNPL 126
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: C1EIH8_MICCC (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EIH8_MICCC)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    9 PAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            PA+R+ DPETAHN+ +   A G+ P +   +PPAL VD  GL+FANP+
Sbjct:   98 PAMRLMDPETAHNVGIELLARGVAPVETRRDPPALAVDAWGLRFANPI 145
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A225UVW3_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225UVW3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.650e-8
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP VR+FDPETAH +AV    +GL P+D   +P  L V   GL F NPL
Sbjct:   66 MPVVRLFDPETAHKVAVQCARFGLTPKDPETDPELLQVQALGLTFPNPL 114
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A3R7FWP2_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FWP2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP VR+FDPETAH IAV    +GL P+D   +P  L +   GL F NPL
Sbjct:    2 MPVVRLFDPETAHKIAVQCARFGLTPKDPETDPELLRIKAFGLDFTNPL 50
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A3M6VCA1_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCA1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.960e-8
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP +R+FDPET+H IAV    +GL P+D   +P  L+V   GL+F NPL
Sbjct:   66 MPVLRLFDPETSHQIAVQCARFGLTPKDPEEDPELLHVKALGLQFTNPL 114
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A662X2Z7_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2Z7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.730e-7
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MP VRMFDPETAH IAV    +GL P+D   +   L VD  G  F NPL
Sbjct:   75 MPVVRMFDPETAHQIAVQCARFGLTPKDDQPDASLLAVDVFGQTFPNPL 123
[Close]
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Match: A0A067BRA0_SAPPC (Dihydroorotate dehydrogenase (quinone), mitochondrial n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BRA0_SAPPC)

HSP 1 Score: 54.7 bits (130), Expect = 2.370e-7
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:    6 MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL 152
            MPAVR+FDPETAH +AV    +GL P+D   + P+L V    L F NPL
Sbjct:   62 MPAVRLFDPETAHILAVKAAKYGLIPKDKRHDDPSLQVTAFNLTFDNPL 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7S4D679_HETAK8.490e-30100.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A0P1A445_PLAHL8.450e-1057.14Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
D0MUE3_PHYIT5.540e-955.10Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A8K1C5T7_PYTOL5.540e-959.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
C1EIH8_MICCC1.040e-852.08Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A225UVW3_9STRA2.650e-853.06Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A3R7FWP2_9STRA3.640e-853.06Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A3M6VCA1_9STRA4.960e-851.02Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A662X2Z7_9STRA1.730e-755.10Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A067BRA0_SAPPC2.370e-753.06Dihydroorotate dehydrogenase (quinone), mitochondr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:3403751..3404134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_01913T0
PFAMsDHO_dh
Model size152
Max annot lvl4776|Peronosporales
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.19e-09
EggNOG OGsCOG0167@1|root,KOG1436@2759|Eukaryota,3QERB@4776|Peronosporales
EC1.3.5.2
DescriptionDihydroorotate dehydrogenase
Cds size147
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388031.3363159-CDS-H-akashiwo_Contig9:3403750..34038161681388031.3363159-CDS-H-akashiwo_Contig9:3403750..3403816Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3403751..3403816 -
1681388031.349437-CDS-H-akashiwo_Contig9:3404048..34041291681388031.349437-CDS-H-akashiwo_Contig9:3404048..3404129Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3404049..3404129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388031.3598933-UTR-H-akashiwo_Contig9:3404129..34041341681388031.3598933-UTR-H-akashiwo_Contig9:3404129..3404134Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 3404130..3404134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.53.1prot_H-akashiwo_Contig9.53.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 3403751..3404129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.53.1

>prot_H-akashiwo_Contig9.53.1 ID=prot_H-akashiwo_Contig9.53.1|Name=mRNA_H-akashiwo_Contig9.53.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
MPAVRMFDPETAHNIAVMTTAWGLGPRDWFGNPPALNVDFCGLKFANPL
back to top

mRNA from alignment at H-akashiwo_Contig9:3403751..3404134-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.53.1 ID=mRNA_H-akashiwo_Contig9.53.1|Name=mRNA_H-akashiwo_Contig9.53.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=384bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3403751..3404134- (Heterosigma akashiwo CCMP452)
TGGCGATGCCTGCTGTGCGGATGTTCGATCCAGAAACTGCTCATAACATT
GCCGTTATGACTACTGCTTGGGGCTTGGGGCCACGGGTATGTATGGGGCT
ACTTATTTCTTCCTGTTTTTTTTCAGTGGCCGACAATCGCATTTGCACTT
GGACACTTCCACTCTCATGTATATATATGCATGTCGCAAAAAACAACACC
TTCATTTTCATGACCTTGTACTACACAAAACCTTGTAGTGTTTAATACAC
TGTAACAACTCATATACAAAGTAAAAAGCACACCCTCCCTGTTCCTTTGC
AATCTCTACTCTCTTCAGGATTGGTTTGGCAACCCTCCTGCTCTCAATGT
TGATTTCTGTGGCTTAAAGTTTGCCAATCCATTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig9:3403751..3404134-

>mRNA_H-akashiwo_Contig9.53.1 ID=mRNA_H-akashiwo_Contig9.53.1|Name=mRNA_H-akashiwo_Contig9.53.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3403751..3404134- (Heterosigma akashiwo CCMP452)
ATGCCTGCTGTGCGGATGTTCGATCCAGAAACTGCTCATAACATTGCCGT
TATGACTACTGCTTGGGGCTTGGGGCCACGGGATTGGTTTGGCAACCCTC
CTGCTCTCAATGTTGATTTCTGTGGCTTAAAGTTTGCCAATCCATTG
back to top