mRNA_H-akashiwo_Contig810.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig810.3.1
Unique NamemRNA_H-akashiwo_Contig810.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 226 bits (575), Expect = 5.030e-71
Identity = 106/142 (74.65%), Postives = 125/142 (88.03%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFER 426
            ++D+DFC DR+ GKSVTGY++ LG +PIVW+SKLQ AV+TSTVEAEYL+LRSAVKDIMWLR LL ++GCPQ EPTPVVEDNSAC+EWA  M+V+++ RHFHVSYHLAKEQV+LGTIRM Y KT DQ+ADI TKALNA  FER
Sbjct:  201 FSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFER 342          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 147 bits (372), Expect = 1.930e-38
Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALN 408
            Y DADFC +R KG+S +G+ I LG SPI+W+S++Q  V+ +T EAEY+SLR+AV D+MWL+ LL  LG  Q    P+ EDN ACI WA    VS+  RH HVSYH  KE V    I + Y  T  Q+AD+FTK L+
Sbjct:  848 YADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 119 bits (298), Expect = 2.300e-31
Identity = 61/137 (44.53%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 YTDADF--CQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKAL 405
            + DAD+  C D    +S TG++ MLGGS IVW S+ Q  V++STVEAEY+++  A ++ +WL+ LL +LG    EPTP+  DN   I  AR     R+T+H  + +HL +E +  G +R+ Y  T+ Q+ADIFTKAL
Sbjct:   17 WVDADWGGCHDT--RRSTTGHIFMLGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKAL 151          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A1J3JFW6_NOCCA (Copia protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JFW6_NOCCA)

HSP 1 Score: 119 bits (297), Expect = 2.610e-31
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFE 423
            Y DAD+  DR   +S TGY   +GG+ + W SK Q  VS S+ EAEY ++R    ++MWL+ LL DLG     P  +  DN A I  A   V   +T+H  V  H  +EQ+ LG I   Y K+SDQLADIFTKA +++  E
Sbjct:   16 YCDADYAGDRSDRRSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPRPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKAASSKTCE 156          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 126 bits (316), Expect = 6.850e-31
Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFE 423
            + D+D+  D    KS +GYV MLGG  I WASK Q  V+ ST EAE++S        +WLR++L ++GC Q   T V  DNS+ I+ ++  V+  +++H HV YH  +E V  GTIR+ Y  T+DQ+ADI TKA+  EVFE
Sbjct: 1181 FVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFE 1321          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 2.110e-30
Identity = 57/142 (40.14%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFER 426
            Y+DAD+  D    KS TGY+  +GG+ + W  K Q++V+ ST E+EY++L SA ++ +W+R L  DLG PQ++PT + EDN + I  A+      +++H  + YH  +EQV+   I + Y  T D +ADI TK +  E FE+
Sbjct:  193 YSDADWGGDCNDHKSTTGYLFQIGGTAVTWKCKKQSSVALSTAESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNPQFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEK 334          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A8D8N898_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8N898_CULPI)

HSP 1 Score: 115 bits (289), Expect = 3.660e-30
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   10 ADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNA 411
            AD+  D    KS +G+V   G + I WAS+ QT VSTST+EAEY++L  AV++++WLR LL +LG  Q  PT + EDN +C+++      +R+++H    +H  K+    G I + Y  T+D LADI TK L A
Sbjct:   12 ADWASDTSDRKSNSGFVFRFGEATISWASRKQTCVSTSTMEAEYVALAEAVQEVVWLRRLLAELGEKQQTPTTIFEDNKSCLDFVALERQNRRSKHIDTKFHYIKDAATSGQIVLRYCTTTDMLADIMTKPLGA 145          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 115 bits (289), Expect = 8.940e-30
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFER 426
            Y+DAD+  D    +S TGY+  +GG  + W SK Q  V+ ST EAEY++L S  ++ +W+R L  D+      PT + EDN + I  A+      + +H  + YH  +EQV+  ++++ Y +T D +ADIFTK L  E FER
Sbjct:   31 YSDADWGGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFER 172          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: A0A085LNI6_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085LNI6_9BILA)

HSP 1 Score: 114 bits (286), Expect = 1.260e-29
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFER 426
            + DAD+  D    KS +GYV  +G S I W+SK Q+ V+ S+ EAEY++   A +++ WLR LL D+  PQ  PT + EDN  CI+ A+    S++T+H  V +H  ++    G + + Y  +S+  AD+ TK L  + F+R
Sbjct:   23 FVDADWAGDHADRKSTSGYVFQIGHSTIAWSSKKQSVVAMSSTEAEYVAASEACREVQWLRQLLADMEVPQDGPTKIYEDNQGCIKVAQSDRCSQRTKHIDVRHHQLRDLCESGIVSLVYCPSSEMPADVLTKPLGKDKFDR 164          
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Match: UPI0008FD27FA (uncharacterized protein LOC109116892 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD27FA)

HSP 1 Score: 122 bits (306), Expect = 1.520e-29
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSLRSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFER 426
            Y DAD+  DRI  KS TG+   +GG+ + W SK QT V+ S+ EAEY ++ +   ++MWL+ LL DLG    +P P+  DN A I  A   V   +T+H  V  HL +E++  G I   Y K+S+QLADIFTKA ++ V ++
Sbjct: 1150 YCDADWAGDRIDRKSTTGFCTFVGGNLVTWKSKKQTVVARSSAEAEYRAMANTTCELMWLKSLLHDLGITSPQPMPLHCDNQAAIHIAANSVFHERTKHIEVDCHLIREKITQGVITTIYTKSSEQLADIFTKATSSYVLDK 1291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig810.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.030e-7174.65Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK1.930e-3852.21Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A427XXX1_9TREE2.300e-3144.53Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
A0A1J3JFW6_NOCCA2.610e-3143.97Copia protein (Fragment) n=2 Tax=Noccaea caerulesc... [more]
Q9C7Y1_ARATH6.850e-3145.39Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
A0A482ZNW2_9GAMM2.110e-3040.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8N898_CULPI3.660e-3042.54Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A1X7SFX4_AMPQE8.940e-3038.73Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A085LNI6_9BILA1.260e-2938.03Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
UPI0008FD27FA1.520e-2942.96uncharacterized protein LOC109116892 n=1 Tax=Taren... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig810contigH-akashiwo_Contig810:163856..164281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size426
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size426
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.5613487-CDS-H-akashiwo_Contig810:163855..1642811681387994.5613487-CDS-H-akashiwo_Contig810:163855..164281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig810 163856..164281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig810.3.1prot_H-akashiwo_Contig810.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig810 163856..164281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig810.3.1

>prot_H-akashiwo_Contig810.3.1 ID=prot_H-akashiwo_Contig810.3.1|Name=mRNA_H-akashiwo_Contig810.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=142bp
YTDADFCQDRIKGKSVTGYVIMLGGSPIVWASKLQTAVSTSTVEAEYLSL
RSAVKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARGMVVSRKTRHF
HVSYHLAKEQVNLGTIRMHYAKTSDQLADIFTKALNAEVFER
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mRNA from alignment at H-akashiwo_Contig810:163856..164281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig810.3.1 ID=mRNA_H-akashiwo_Contig810.3.1|Name=mRNA_H-akashiwo_Contig810.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=426bp|location=Sequence derived from alignment at H-akashiwo_Contig810:163856..164281- (Heterosigma akashiwo CCMP452)
TACACTGATGCCGATTTTTGCCAAGACAGGATAAAGGGCAAATCTGTGAC TGGCTATGTGATCATGCTTGGTGGCTCACCTATTGTGTGGGCCTCAAAAC TTCAAACTGCAGTTAGTACTTCTACTGTGGAGGCTGAGTATCTCTCACTG AGGTCTGCTGTAAAAGATATTATGTGGCTGAGGCATCTTCTTGTGGACCT TGGCTGCCCTCAGGCTGAGCCTACACCTGTGGTTGAAGACAACTCTGCCT GCATTGAGTGGGCAAGGGGCATGGTGGTCTCCAGGAAAACCAGGCATTTT CATGTGTCCTACCACCTGGCTAAGGAGCAAGTGAACCTGGGGACCATCCG GATGCACTACGCCAAGACCAGTGACCAATTAGCTGACATCTTCACCAAGG CCCTGAATGCTGAAGTTTTTGAAAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig810:163856..164281-

>mRNA_H-akashiwo_Contig810.3.1 ID=mRNA_H-akashiwo_Contig810.3.1|Name=mRNA_H-akashiwo_Contig810.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=426bp|location=Sequence derived from alignment at H-akashiwo_Contig810:163856..164281- (Heterosigma akashiwo CCMP452)
TACACTGATGCCGATTTTTGCCAAGACAGGATAAAGGGCAAATCTGTGAC
TGGCTATGTGATCATGCTTGGTGGCTCACCTATTGTGTGGGCCTCAAAAC
TTCAAACTGCAGTTAGTACTTCTACTGTGGAGGCTGAGTATCTCTCACTG
AGGTCTGCTGTAAAAGATATTATGTGGCTGAGGCATCTTCTTGTGGACCT
TGGCTGCCCTCAGGCTGAGCCTACACCTGTGGTTGAAGACAACTCTGCCT
GCATTGAGTGGGCAAGGGGCATGGTGGTCTCCAGGAAAACCAGGCATTTT
CATGTGTCCTACCACCTGGCTAAGGAGCAAGTGAACCTGGGGACCATCCG
GATGCACTACGCCAAGACCAGTGACCAATTAGCTGACATCTTCACCAAGG
CCCTGAATGCTGAAGTTTTTGAAAGG
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