mRNA_H-akashiwo_Contig807.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig807.13.1
Unique NamemRNA_H-akashiwo_Contig807.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: B2XTB4_HETAK (Conserved hypothetical plastid protein Ycf54 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTB4_HETAK)

HSP 1 Score: 236 bits (603), Expect = 7.580e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 MSIKYYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISPLDF 342
            MSIKYYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISPLDF
Sbjct:    1 MSIKYYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISPLDF 114          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A0R0M4M4_9CYAN (Uncharacterized protein n=7 Tax=Cylindrospermopsis TaxID=77021 RepID=A0A0R0M4M4_9CYAN)

HSP 1 Score: 102 bits (253), Expect = 1.170e-25
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   10 KYYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFS 315
            KY++V+ S++FL +EEPLEE+LRER+++ + +            E  ++FW+++NP FLEA E   +K K P  P+AI+ST   FITWLKLRL HV  G F+
Sbjct:    3 KYHYVLASQKFLLEEEPLEEVLRERIRNYHER------------EKEIDFWLVKNPAFLEAPEMSDIKKKCPQLPVAIISTDSQFITWLKLRLEHVIVGEFT 92          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: B7T235_VAULI (Hypothetical 12.7KD protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T235_VAULI)

HSP 1 Score: 99.0 bits (245), Expect = 2.020e-24
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   10 KYYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNF 312
            KYYF+V S QFL  EEPLEE+LRER+Q                    ++FW+L  P FL++  ++ L  +LP N IAIVST+K FITWLKLRLN+V+ G F
Sbjct:    5 KYYFIVASNQFLITEEPLEEVLRERIQYYRITKKR------------IDFWLLPKPTFLQSKLYKDLTKQLPENCIAIVSTNKIFITWLKLRLNNVFIGKF 93          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A1Z4USG3_9CYAN (Uncharacterized protein n=6 Tax=Nostocales TaxID=1161 RepID=A0A1Z4USG3_9CYAN)

HSP 1 Score: 98.2 bits (243), Expect = 4.170e-24
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNF---SQTNISPL 336
            YY+V+ S+ FL +EEPLEE+L+ER ++ + +            E  ++FW+++NP FLEA E  + K K P  P+AI+ST+  FITWLKLRL +V TG F   S T  +PL
Sbjct:    4 YYYVLASQHFLLEEEPLEEVLKERTRNYHEQ------------EKEIDFWLVKNPAFLEAPEMAANKAKCPKPPVAIISTNSQFITWLKLRLEYVITGEFPAPSATIPNPL 102          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A3D1PHA0_9CYAN (DUF2488 domain-containing protein n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1PHA0_9CYAN)

HSP 1 Score: 97.1 bits (240), Expect = 1.150e-23
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISPLD 339
            YY+V+ S++FL +EEP++E+LRER +  + K            E  ++FW+++ P FLEA E Q++K + P   +AIVST+  FITWLKLRL +V TG F   + S  D
Sbjct:    4 YYYVLASQKFLLEEEPIDEVLRERTRDYHEK------------EKEIDFWLVKQPAFLEAPEMQAIKNQCPQPSVAIVSTNSQFITWLKLRLEYVLTGQFQAPSDSISD 100          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A6P2ACC6_9CHRO (DUF2488 family protein n=1 Tax=Gloeocapsa sp. DLM2.Bin57 TaxID=2480214 RepID=A0A6P2ACC6_9CHRO)

HSP 1 Score: 97.1 bits (240), Expect = 1.190e-23
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNF---SQTNISPL 336
            YY+V+ S++FL +EEPL+E+L+ER+++   ++              ++FW++  P FLEA EF  +K K+P    AIVST+ TFITWLKLRL  V TG F   S+T   PL
Sbjct:    4 YYYVLASQKFLLEEEPLDEVLQERIRNYQEQNK------------EIDFWVVTQPAFLEAPEFAEIKAKVPRESAAIVSTNSTFITWLKLRLEFVITGEFDAPSETIPDPL 102          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A1Z4JCR8_LEPBY (Uncharacterized protein n=1 Tax=Leptolyngbya boryana NIES-2135 TaxID=1973484 RepID=A0A1Z4JCR8_LEPBY)

HSP 1 Score: 96.7 bits (239), Expect = 1.640e-23
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISP 333
            YY+V+ S++FL  EEP+EE+L+ER +    K+              ++FW+++ P FLEA E    K K P   +AIVST K FITWLKLRL +V TG F Q+   P
Sbjct:    4 YYYVLASQKFLLQEEPIEEVLKERYRDYAEKNR------------EIDFWVIKEPAFLEAPEMAENKAKCPRPAVAIVSTKKQFITWLKLRLEYVITGEFQQSETIP 98          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A1U7I8X6_9CYAN (Uncharacterized protein n=2 Tax=Phormidium TaxID=1198 RepID=A0A1U7I8X6_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.680e-23
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISPLD 339
            YY+V+ S++FL +EEPL+E+LRER++  + K            E  ++FW+++ P FLEA E  ++K K P    AIVST++ FITWLKLRL +V TG F+  + S  D
Sbjct:    4 YYYVLASQKFLLEEEPLDEVLRERVRDYHEK------------EKEIDFWLVKQPAFLEAPEMAAIKAKTPQPACAIVSTNQQFITWLKLRLEYVVTGEFTAPSNSIPD 100          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A8J6RP71_9CYAN (DUF2488 family protein n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RP71_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.680e-23
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNFSQTNISPLD 339
            YY+V+GS++FL +EEP +E+L+ER+++ N +            E  ++FW+++ P FLEA E  ++K K P    A++ST+  FITWLKLRL  V TG F   N S  D
Sbjct:    4 YYYVLGSQRFLLEEEPFDEVLKERIRNYNEQ------------EKEIDFWLVKQPAFLEAPEMATIKAKCPQPAAAVISTNSQFITWLKLRLEFVITGEFQAPNESIPD 100          
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Match: A0A1Z4RY74_9NOSO (Uncharacterized protein n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A1Z4RY74_9NOSO)

HSP 1 Score: 96.7 bits (239), Expect = 1.680e-23
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   13 YYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPPVNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVYTGNF---SQTNISPL 336
            YY+V+ SKQFL DEEP+ E+L+ER +  + +            E  ++FW+++ P FLEA E   +K K P    AI+ST+  FITWLKLRL +V TG F   SQT  +PL
Sbjct:    4 YYYVLASKQFLVDEEPIHEVLKERTRHYHEQ------------EKEIDFWLVQKPAFLEAPELAEVKAKCPKPAAAIISTNSQFITWLKLRLEYVITGEFQAPSQTIPNPL 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig807.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B2XTB4_HETAK7.580e-79100.00Conserved hypothetical plastid protein Ycf54 n=2 T... [more]
A0A0R0M4M4_9CYAN1.170e-2546.08Uncharacterized protein n=7 Tax=Cylindrospermopsis... [more]
B7T235_VAULI2.020e-2449.50Hypothetical 12.7KD protein n=1 Tax=Vaucheria lito... [more]
A0A1Z4USG3_9CYAN4.170e-2445.05Uncharacterized protein n=6 Tax=Nostocales TaxID=1... [more]
A0A3D1PHA0_9CYAN1.150e-2343.12DUF2488 domain-containing protein n=1 Tax=Cyanobac... [more]
A0A6P2ACC6_9CHRO1.190e-2344.14DUF2488 family protein n=1 Tax=Gloeocapsa sp. DLM2... [more]
A0A1Z4JCR8_LEPBY1.640e-2343.93Uncharacterized protein n=1 Tax=Leptolyngbya borya... [more]
A0A1U7I8X6_9CYAN1.680e-2344.04Uncharacterized protein n=2 Tax=Phormidium TaxID=1... [more]
A0A8J6RP71_9CYAN1.680e-2342.20DUF2488 family protein n=5 Tax=Cyanobacteria TaxID... [more]
A0A1Z4RY74_9NOSO1.680e-2345.05Uncharacterized protein n=2 Tax=Nostocaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig807contigH-akashiwo_Contig807:14285..14670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog533247.CRD_00211
Preferred nameycf54
PFAMsYcf54
Model size386
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.79e-26
EggNOG OGs2AIVE@1|root,319CP@2|Bacteria,1G6QT@1117|Cyanobacteria,1HNU7@1161|Nostocales
DescriptionProtein of unknown function (DUF2488)
Cds size345
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387991.8356633-CDS-H-akashiwo_Contig807:14284..146291681387991.8356633-CDS-H-akashiwo_Contig807:14284..14629Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig807 14285..14629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387991.845468-UTR-H-akashiwo_Contig807:14629..146701681387991.845468-UTR-H-akashiwo_Contig807:14629..14670Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig807 14630..14670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig807.13.1prot_H-akashiwo_Contig807.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig807 14285..14629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig807.13.1

>prot_H-akashiwo_Contig807.13.1 ID=prot_H-akashiwo_Contig807.13.1|Name=mRNA_H-akashiwo_Contig807.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=115bp
MSIKYYFVVGSKQFLCDEEPLEEILRERLQSLNGKSNMLVIPGGFNGEPP
VNFWILENPKFLEASEFQSLKGKLPNNPIAIVSTSKTFITWLKLRLNHVY
TGNFSQTNISPLDF*
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mRNA from alignment at H-akashiwo_Contig807:14285..14670+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig807.13.1 ID=mRNA_H-akashiwo_Contig807.13.1|Name=mRNA_H-akashiwo_Contig807.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=386bp|location=Sequence derived from alignment at H-akashiwo_Contig807:14285..14670+ (Heterosigma akashiwo CCMP452)
ATGTCCATTAAATATTATTTTGTGGTAGGAAGTAAACAGTTCTTATGTGA CGAGGAACCATTAGAGGAAATTTTACGAGAACGGCTTCAAAGTCTTAATG GCAAATCAAATATGTTGGTTATACCAGGTGGTTTTAATGGAGAACCACCA GTAAATTTTTGGATATTAGAAAACCCTAAATTTTTAGAAGCCTCAGAATT TCAATCACTTAAAGGAAAATTGCCAAATAACCCAATTGCTATAGTTTCAA CTAGTAAAACTTTTATAACATGGTTGAAACTTCGATTAAATCATGTTTAT ACGGGTAATTTTAGTCAAACAAATATTAGTCCTTTAGACTTTTAAACTAT TTACTTACTCGCCAAGCAAAAGGATTAACGTAAAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig807:14285..14670+

>mRNA_H-akashiwo_Contig807.13.1 ID=mRNA_H-akashiwo_Contig807.13.1|Name=mRNA_H-akashiwo_Contig807.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=345bp|location=Sequence derived from alignment at H-akashiwo_Contig807:14285..14670+ (Heterosigma akashiwo CCMP452)
ATGTCCATTAAATATTATTTTGTGGTAGGAAGTAAACAGTTCTTATGTGA
CGAGGAACCATTAGAGGAAATTTTACGAGAACGGCTTCAAAGTCTTAATG
GCAAATCAAATATGTTGGTTATACCAGGTGGTTTTAATGGAGAACCACCA
GTAAATTTTTGGATATTAGAAAACCCTAAATTTTTAGAAGCCTCAGAATT
TCAATCACTTAAAGGAAAATTGCCAAATAACCCAATTGCTATAGTTTCAA
CTAGTAAAACTTTTATAACATGGTTGAAACTTCGATTAAATCATGTTTAT
ACGGGTAATTTTAGTCAAACAAATATTAGTCCTTTAGACTTTTAA
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