mRNA_H-akashiwo_Contig806.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig806.6.1
Unique NamemRNA_H-akashiwo_Contig806.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 3.500e-56
Identity = 83/142 (58.45%), Postives = 118/142 (83.10%), Query Frame = 1
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRT-DDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            MSG+LFEDIF+V +LNP+GKKF++VNR+ CKG+TY+MDL+LD N +IY +KEGE+++ V+A TL+L G  DDGTY+   DE +L D YEY MHG VY++D +++ +V V+ASFGGLLMRL G+QRH+A+I++D R++ L+R+
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.360e-54
Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    4 SGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRT-DDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            +GILFED+F V QLNP GKKF++VNR+ CK +T+EMDL+LD NSEIY++++ +K+S+VL+ TL LDG+ DDGTYR  + E TL   YEY MHG V+KY+     QV V ASFGGLLMRL G QRHL  I IDQRIY+LIR+
Sbjct:    4 TGILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQ 144          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 174 bits (441), Expect = 1.800e-53
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 1
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            M+  LFEDIF+VRQ+NP+GKKF+KV R+ CKG++YE++L LD NSE+Y L++ EK +  L  TL+L+G  DDGTY    +PTLLD Y+Y M+G V++YDHE  + VA+YASFGGLLM L G QRHL  I  D RIY L+RK
Sbjct:    1 MASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.030e-50
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            LFEDIF V+QLNP+GKKF ++NRI   G T++ DL+LD NSEIY + E EKI++VL+ TL+LDG  DDG Y    EPT+ DNYEY MHG V+   ++ +  +AV+ SFGGLLMRL G+QRHL +++ D+R+YILI+K
Sbjct:    7 LFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.470e-49
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            M+  LFEDIF+VRQLNPEGKKF+KV R+  KG++YE++L LD NSE++ LK+ +K +  L  TL+L+G  DDG Y    + TLLD Y+Y M+G +++Y+HE  + VA+YASFGGLLMRL G QRHL  +  D RIY L+RK
Sbjct:   37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.580e-47
Identity = 73/137 (53.28%), Postives = 104/137 (75.91%), Query Frame = 1
Query:   13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            +FEDIF+++QLNPEGKKFE+V R+ CKG++YE++L+LD NSE++ +K  E+ +  L  TL+L+G  DDG +    +PTLLD Y+Y M+G V++YDHE  + VA+YASFGGLLM L G+Q HL +I    R+Y L+R+
Sbjct:    6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTGKPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.970e-47
Identity = 80/138 (57.97%), Postives = 108/138 (78.26%), Query Frame = 1
Query:   13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDG-TYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            LFEDIF+V  LNPE K FE+VNR+   G T+E DL+LD N EIYS++E ++I+VVLA TLNLDG+ DD  +Y    EP+L DNYEY MHG V++  ++++  ++++ASFGGLLMRL G+QRHL++IQ D R+YILI+K
Sbjct:   12 LFEDIFEVTALNPEKKIFERVNRLAATGTTFECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKK 149          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S2GK34_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GK34_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.390e-47
Identity = 76/140 (54.29%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 SGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            +GI+F D F VRQ+NPE K F++++RI  +G T+EM L++D N E++S+   +KI+  LA TL+LDGS DDGTY   D P+LLD YEYAMHG VY ++H+    + V  SFGGLLMR+ G+QRHL +IQ+DQ IY L+ K
Sbjct:    3 TGIVFNDTFQVRQINPEKKTFDRIDRILAQGETFEMGLLMDINCELWSVNPYDKIAFALANTLSLDGSPDDGTYNQQDGPSLLDRYEYAMHGKVYNFNHKSGQFIEVDISFGGLLMRISGDQRHLMNIQLDQNIYCLMSK 142          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: F0W6P2_9STRA (DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6P2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.340e-46
Identity = 76/141 (53.90%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            M+  LFEDIF+VR+LNPEGK F+KV R+  KG++YE++L LD NSE++ LK+ +K +  L  TL+L+G  DDG Y    + TLLD Y+Y M+G ++ Y+HE  + VA+YASFGGLLMRL G QRHL  +  D R+Y L+RK
Sbjct:   84 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC)

HSP 1 Score: 156 bits (395), Expect = 2.350e-46
Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 1
Query:   13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTD-----DEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423
            LFEDIF++  LNPEGKKFE+VNR+  KG T++ DL+LD+N +IYSL E EK+++VLA TLNLDGS DD T         +EPTL DNYEY MHG V+   ++++  V +  SFGGLL RL G+QRHL++I  D R++ILI+K
Sbjct:    9 LFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKK 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI3.500e-5658.45DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA5.360e-5462.41DNA-directed RNA polymerases I, II, and III subuni... [more]
K3X3H5_GLOUD1.800e-5358.87DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1BC37_9STRA6.030e-5057.66DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA2.470e-4956.03Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A024TMY4_9STRA1.580e-4753.28DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0CGW6_9STRA1.970e-4757.97DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2GK34_9STRA2.390e-4754.29DNA-directed RNA polymerases I, II, and III subuni... [more]
F0W6P2_9STRA1.340e-4653.90DNAdirected RNA polymerase I putative n=3 Tax=Albu... [more]
K0RE90_THAOC2.350e-4656.34DNA-directed RNA polymerases I, II, and III subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig806contigH-akashiwo_Contig806:345161..345595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LM46
Preferred nameRPB8
PFAMsRNA_pol_Rpb8
Model size435
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03016
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue5.74e-57
EggNOG OGsKOG3400@1|root,KOG3400@2759|Eukaryota
Descriptiontranscription by RNA polymerase I
Cds size435
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387991.1882255-CDS-H-akashiwo_Contig806:345160..3455951681387991.1882255-CDS-H-akashiwo_Contig806:345160..345595Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig806 345161..345595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig806.6.1prot_H-akashiwo_Contig806.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig806 345161..345595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig806.6.1

>prot_H-akashiwo_Contig806.6.1 ID=prot_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp
MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSL
KEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDH
EENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRKTTA*
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mRNA from alignment at H-akashiwo_Contig806:345161..345595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig806.6.1 ID=mRNA_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig806:345161..345595- (Heterosigma akashiwo CCMP452)
ATGTCAGGAATTCTGTTCGAAGACATTTTCGATGTGCGGCAGCTCAATCC TGAAGGGAAGAAGTTTGAGAAAGTTAACCGTATTTACTGCAAAGGCATGA CCTACGAGATGGATCTCATTTTGGATCATAACTCAGAAATATACTCGCTT AAAGAGGGCGAAAAAATTAGCGTGGTCTTGGCAAAGACGCTCAATCTCGA TGGATCACTAGATGATGGAACATACCGAACGGATGATGAGCCTACACTTC TGGATAACTACGAATATGCCATGCACGGAGTTGTATACAAATATGACCAC GAAGAGAATCACCAGGTAGCGGTATATGCGTCTTTTGGAGGATTACTGAT GCGCCTAATCGGTAACCAGCGGCATCTCGCAAGCATTCAAATTGATCAGA GGATCTACATCTTGATAAGAAAAACAACTGCCTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig806:345161..345595-

>mRNA_H-akashiwo_Contig806.6.1 ID=mRNA_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig806:345161..345595- (Heterosigma akashiwo CCMP452)
ATGTCAGGAATTCTGTTCGAAGACATTTTCGATGTGCGGCAGCTCAATCC
TGAAGGGAAGAAGTTTGAGAAAGTTAACCGTATTTACTGCAAAGGCATGA
CCTACGAGATGGATCTCATTTTGGATCATAACTCAGAAATATACTCGCTT
AAAGAGGGCGAAAAAATTAGCGTGGTCTTGGCAAAGACGCTCAATCTCGA
TGGATCACTAGATGATGGAACATACCGAACGGATGATGAGCCTACACTTC
TGGATAACTACGAATATGCCATGCACGGAGTTGTATACAAATATGACCAC
GAAGAGAATCACCAGGTAGCGGTATATGCGTCTTTTGGAGGATTACTGAT
GCGCCTAATCGGTAACCAGCGGCATCTCGCAAGCATTCAAATTGATCAGA
GGATCTACATCTTGATAAGAAAAACAACTGCCTAG
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