mRNA_H-akashiwo_Contig806.6.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI) HSP 1 Score: 181 bits (459), Expect = 3.500e-56 Identity = 83/142 (58.45%), Postives = 118/142 (83.10%), Query Frame = 1 Query: 1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRT-DDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 MSG+LFEDIF+V +LNP+GKKF++VNR+ CKG+TY+MDL+LD N +IY +KEGE+++ V+A TL+L G DDGTY+ DE +L D YEY MHG VY++D +++ +V V+ASFGGLLMRL G+QRH+A+I++D R++ L+R+ Sbjct: 1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA) HSP 1 Score: 176 bits (445), Expect = 5.360e-54 Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 1 Query: 4 SGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRT-DDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 +GILFED+F V QLNP GKKF++VNR+ CK +T+EMDL+LD NSEIY++++ +K+S+VL+ TL LDG+ DDGTYR + E TL YEY MHG V+KY+ QV V ASFGGLLMRL G QRHL I IDQRIY+LIR+ Sbjct: 4 TGILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQ 144
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD) HSP 1 Score: 174 bits (441), Expect = 1.800e-53 Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 1 Query: 1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 M+ LFEDIF+VRQ+NP+GKKF+KV R+ CKG++YE++L LD NSE+Y L++ EK + L TL+L+G DDGTY +PTLLD Y+Y M+G V++YDHE + VA+YASFGGLLM L G QRHL I D RIY L+RK Sbjct: 1 MASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA) HSP 1 Score: 165 bits (418), Expect = 6.030e-50 Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1 Query: 13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 LFEDIF V+QLNP+GKKF ++NRI G T++ DL+LD NSEIY + E EKI++VL+ TL+LDG DDG Y EPT+ DNYEY MHG V+ ++ + +AV+ SFGGLLMRL G+QRHL +++ D+R+YILI+K Sbjct: 7 LFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA) HSP 1 Score: 165 bits (417), Expect = 2.470e-49 Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 1 Query: 1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 M+ LFEDIF+VRQLNPEGKKF+KV R+ KG++YE++L LD NSE++ LK+ +K + L TL+L+G DDG Y + TLLD Y+Y M+G +++Y+HE + VA+YASFGGLLMRL G QRHL + D RIY L+RK Sbjct: 37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.580e-47 Identity = 73/137 (53.28%), Postives = 104/137 (75.91%), Query Frame = 1 Query: 13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 +FEDIF+++QLNPEGKKFE+V R+ CKG++YE++L+LD NSE++ +K E+ + L TL+L+G DDG + +PTLLD Y+Y M+G V++YDHE + VA+YASFGGLLM L G+Q HL +I R+Y L+R+ Sbjct: 6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTGKPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.970e-47 Identity = 80/138 (57.97%), Postives = 108/138 (78.26%), Query Frame = 1 Query: 13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDG-TYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 LFEDIF+V LNPE K FE+VNR+ G T+E DL+LD N EIYS++E ++I+VVLA TLNLDG+ DD +Y EP+L DNYEY MHG V++ ++++ ++++ASFGGLLMRL G+QRHL++IQ D R+YILI+K Sbjct: 12 LFEDIFEVTALNPEKKIFERVNRLAATGTTFECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKK 149
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S2GK34_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GK34_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.390e-47 Identity = 76/140 (54.29%), Postives = 103/140 (73.57%), Query Frame = 1 Query: 4 SGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 +GI+F D F VRQ+NPE K F++++RI +G T+EM L++D N E++S+ +KI+ LA TL+LDGS DDGTY D P+LLD YEYAMHG VY ++H+ + V SFGGLLMR+ G+QRHL +IQ+DQ IY L+ K Sbjct: 3 TGIVFNDTFQVRQINPEKKTFDRIDRILAQGETFEMGLLMDINCELWSVNPYDKIAFALANTLSLDGSPDDGTYNQQDGPSLLDRYEYAMHGKVYNFNHKSGQFIEVDISFGGLLMRISGDQRHLMNIQLDQNIYCLMSK 142
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: F0W6P2_9STRA (DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6P2_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.340e-46 Identity = 76/141 (53.90%), Postives = 103/141 (73.05%), Query Frame = 1 Query: 1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 M+ LFEDIF+VR+LNPEGK F+KV R+ KG++YE++L LD NSE++ LK+ +K + L TL+L+G DDG Y + TLLD Y+Y M+G ++ Y+HE + VA+YASFGGLLMRL G QRHL + D R+Y L+RK Sbjct: 84 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC) HSP 1 Score: 156 bits (395), Expect = 2.350e-46 Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 1 Query: 13 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTD-----DEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 423 LFEDIF++ LNPEGKKFE+VNR+ KG T++ DL+LD+N +IYSL E EK+++VLA TLNLDGS DD T +EPTL DNYEY MHG V+ ++++ V + SFGGLL RL G+QRHL++I D R++ILI+K Sbjct: 9 LFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKK 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig806.6.1 >prot_H-akashiwo_Contig806.6.1 ID=prot_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLback to top mRNA from alignment at H-akashiwo_Contig806:345161..345595- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig806.6.1 ID=mRNA_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig806:345161..345595- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig806:345161..345595- >mRNA_H-akashiwo_Contig806.6.1 ID=mRNA_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig806:345161..345595- (Heterosigma akashiwo CCMP452)back to top |