mRNA_H-akashiwo_Contig1244.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1244.8.1
Unique NamemRNA_H-akashiwo_Contig1244.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4EVV6_9CHLO (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVV6_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 5.180e-9
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQKNPAAR 204
            QV+VP D AIR+ LIA  HS  + GH G T+ +  LR  +WW    +D+  +++ C  CQR K+ + +
Sbjct:  151 QVMVPNDDAIRRDLIAKYHSGPLSGHPGVTRLIEQLRRGFWWPRMAKDVANFIQRCSECQRNKSASGK 218
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BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4B5U4_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B5U4_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 5.280e-9
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQKNPAAR 204
            QV+VP D AIR+ LIA  HS  + GH G T+ +  LR  +WW    +D+  +++ C  CQR K+ + +
Sbjct:  116 QVMVPNDDAIRRDLIAKYHSGPLSGHPGVTRLIEQLRRGFWWPRMAKDVANFIQHCSECQRNKSASGK 183
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BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4F873_9CHLO (Integrase_H2C2 domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F873_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 2.510e-8
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQK 189
            Q+VVP D A+R+ ++A  H   + GH G+T+ +  +R  +WW     D   +VR+C  CQR K
Sbjct:    6 QIVVPNDDALRRDILARFHEDPLAGHPGSTRLVELVRRSFWWPRLVTDAENFVRTCSSCQRNK 68
[Close]
BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A392M1S8_9FABA (Retrotransposon protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M1S8_9FABA)

HSP 1 Score: 57.4 bits (137), Expect = 6.540e-8
Identity = 24/64 (37.50%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQKN 192
            ++++P +  I K ++   H+  +GGH G T+TMA +RA ++WKN  +D+  YV+ C  CQ+ K+
Sbjct:  398 KLLIPNNSDIIKHILNEFHTSHIGGHAGVTRTMARIRAQFYWKNMREDIKKYVQHCVICQQAKS 461
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BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: Q84ZV5_SOYBN (Polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=Q84ZV5_SOYBN)

HSP 1 Score: 57.4 bits (137), Expect = 6.610e-8
Identity = 23/64 (35.94%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQKN 192
            +VV+PA++ I  +++   HS  +GGH G T+T+A L+A ++W    +D+  Y++ C  CQ+ K+
Sbjct: 1061 RVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKS 1124
[Close]
BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A7D9K8X7_PARCT (Transposon Ty3-G Gag-Pol poly (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K8X7_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 8.940e-8
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQKNPAAR 204
            Q+V+P   A++ +++ WAH     GH GT KT   +R  Y+W+N ++D+  + +SC  C  +K+P  R
Sbjct:  634 QLVIP--DALKHEVLVWAHDDATAGHLGTQKTYGKIRTRYYWRNMFRDIDRWCKSCVDCAMKKSPRNR 699
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BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4F859_9CHLO (Integrase_H2C2 domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F859_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 9.200e-8
Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQK 189
            ++VVP D A+R+ ++A  H   + GH G+T+ +  +R  +WW     D   +VR+C  CQR K
Sbjct:   38 RIVVPNDDALRRDILARFHKDPLAGHPGSTRLVELVRRSFWWPRLVTDAENFVRTCSSCQRNK 100
[Close]
BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4BAT9_9CHLO (Integrase_H2C2 domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BAT9_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 1.040e-7
Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQK 189
            ++VVP D A+R+ ++A  H   + GH G+T+ +  +R  +WW     D   +VR+C  CQR K
Sbjct:   13 RIVVPNDDALRRDILARFHEDPLAGHPGSTRLVELVRRSFWWPRLVTDAENFVRTCSLCQRNK 75
[Close]
BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4BSW9_9CHLO (Integrase_H2C2 domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BSW9_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-7
Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQK 189
            ++VVP D A+R+ ++A  H   + GH G+T+ +  +R  +WW     D   +VR+C  CQR K
Sbjct:   21 RIVVPNDDALRRDILACFHEDPLAGHPGSTRLVELVRRSFWWPRLVTDAENFVRTCSSCQRNK 83
[Close]
BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Match: A0A8J4CEU0_9CHLO (Integrase_H2C2 domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CEU0_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.140e-7
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLMTYVRSCKRCQRQK 189
            Q+VVP D A+R+ ++A  H   + GH G+T+ +  +R  +WW    +D   +V++C  CQR K
Sbjct:   17 QIVVPNDDALRRDILARFHEDPLAGHPGSTRLVELVRRSFWWSRLARDAENFVQTCSLCQRNK 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1244.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4EVV6_9CHLO5.180e-939.71Integrase catalytic domain-containing protein (Fra... [more]
A0A8J4B5U4_9CHLO5.280e-939.71Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A8J4F873_9CHLO2.510e-838.10Integrase_H2C2 domain-containing protein n=1 Tax=V... [more]
A0A392M1S8_9FABA6.540e-837.50Retrotransposon protein n=1 Tax=Trifolium medium T... [more]
Q84ZV5_SOYBN6.610e-835.94Polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=Q... [more]
A0A7D9K8X7_PARCT8.940e-835.29Transposon Ty3-G Gag-Pol poly (Fragment) n=1 Tax=P... [more]
A0A8J4F859_9CHLO9.200e-836.51Integrase_H2C2 domain-containing protein n=1 Tax=V... [more]
A0A8J4BAT9_9CHLO1.040e-736.51Integrase_H2C2 domain-containing protein (Fragment... [more]
A0A8J4BSW9_9CHLO1.080e-736.51Integrase_H2C2 domain-containing protein (Fragment... [more]
A0A8J4CEU0_9CHLO1.140e-736.51Integrase_H2C2 domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1244contigH-akashiwo_Contig1244:222602..222814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5145.XP_001907059.1
PFAMsChromo,Peptidase_A2E,RVT_1,rve
Model size213
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003964,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Exons1
Evalue9.99e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,3QP1S@4890|Ascomycota,2126Z@147550|Sordariomycetes,3UASY@5139|Sordariales
DescriptionWGS project CABT00000000 data, contig
Cds size213
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.5461318-CDS-H-akashiwo_Contig1244:222601..2228141681387130.5461318-CDS-H-akashiwo_Contig1244:222601..222814Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1244 222602..222814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1244.8.1prot_H-akashiwo_Contig1244.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1244 222602..222814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1244.8.1

>prot_H-akashiwo_Contig1244.8.1 ID=prot_H-akashiwo_Contig1244.8.1|Name=mRNA_H-akashiwo_Contig1244.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
QVVVPADQAIRKQLIAWAHSLGVGGHTGTTKTMATLRAHYWWKNQYQDLM
TYVRSCKRCQRQKNPAARLRA
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mRNA from alignment at H-akashiwo_Contig1244:222602..222814-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1244.8.1 ID=mRNA_H-akashiwo_Contig1244.8.1|Name=mRNA_H-akashiwo_Contig1244.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:222602..222814- (Heterosigma akashiwo CCMP452)
CAAGTGGTTGTGCCGGCGGACCAGGCAATACGGAAGCAGCTCATTGCCTG
GGCCCACTCTTTGGGGGTCGGGGGCCACACTGGCACGACGAAGACCATGG
CCACCCTCCGAGCACATTACTGGTGGAAGAACCAGTACCAGGACTTGATG
ACATACGTTCGGAGCTGCAAGAGGTGTCAAAGACAAAAGAATCCGGCGGC
TCGGCTGCGGGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1244:222602..222814-

>mRNA_H-akashiwo_Contig1244.8.1 ID=mRNA_H-akashiwo_Contig1244.8.1|Name=mRNA_H-akashiwo_Contig1244.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:222602..222814- (Heterosigma akashiwo CCMP452)
CAAGTGGTTGTGCCGGCGGACCAGGCAATACGGAAGCAGCTCATTGCCTG
GGCCCACTCTTTGGGGGTCGGGGGCCACACTGGCACGACGAAGACCATGG
CCACCCTCCGAGCACATTACTGGTGGAAGAACCAGTACCAGGACTTGATG
ACATACGTTCGGAGCTGCAAGAGGTGTCAAAGACAAAAGAATCCGGCGGC
TCGGCTGCGGGCG
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