mRNA_H-akashiwo_Contig1211.3.1 (mRNA) Heterosigma akashiwo CCMP452
|
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA) HSP 1 Score: 118 bits (295), Expect = 2.370e-29 Identity = 82/185 (44.32%), Postives = 106/185 (57.30%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGV--------------GRKPVVVKKAKPTIKSRQTAT--RPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGG 507
MA +LDM+LDD+IA++T KK S + G+ G +P + + + A RP R + + G++F R G +AGT VEVSNLN+DIMSED+ ELFAT G L +AEV +D SGRS G A VVF RR+DALEA+KKF+ RTLDGT M VK+A G
Sbjct: 1 MAEELDMALDDLIAERTS--KKPQSGRAASGIQQRRAQRRANATPYGGRPARRAAMDMDVDADRPAVTRRPSVLARNTAAAGSGSIFTRLGGKATP-------SAGTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGAG 176
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.450e-22 Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 265 AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGGTANGASSARG 537
AGT V V LN+D+M EDI ELFA G LL ++DYD +GRS G A V+F+RR DA AV +F+ RTLDGT M V+I +GG A A SARG
Sbjct: 106 AGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGA--AESARG 194
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A565CSS4_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CSS4_9BRAS) HSP 1 Score: 97.8 bits (242), Expect = 2.950e-21 Identity = 68/167 (40.72%), Postives = 95/167 (56.89%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXN--AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
MAT LDMSL+D+IAK KS +GT G G P+ ++ P K+ + A P +S +A +S +++ ++ GT + +SNL+Y +M+EDI ELFA G L V +D SGRS+G A VVF RR DAL AVKK+N+ LDG M ++I
Sbjct: 1 MATGLDMSLEDMIAKNRKS--RGTGPARGSGSGSGPI--RRNNPNRKTNRAA--PYQSAKAPESTWEHDMYSERSEDIAHRSSRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFSRRGDALAAVKKYNDVQLDGKPMKIEI 161
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A0D3AKU7_BRAOL (RRM domain-containing protein n=5 Tax=Brassica TaxID=3705 RepID=A0A0D3AKU7_BRAOL) HSP 1 Score: 95.9 bits (237), Expect = 1.050e-20 Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
MAT LDMSLDD+IAK KS G G P ++ P KS ++A P +S +A +S F ++ GT + +SNL+Y +M++DI ELF+ G L V +D SGRS+G A VV+ RR DA+ AVKK+N+ LDG M ++I
Sbjct: 1 MATGLDMSLDDVIAKNRKS----------RGSGSGPGPTRRNNPNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: UPI0006AB1C98 (THO complex subunit 4A-like isoform X3 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1C98) HSP 1 Score: 94.0 bits (232), Expect = 2.040e-20 Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
MAT LDMSLDD+IAK KS G G P ++ P KS ++A P +S +A +S F ++ GT + +SNL+Y +M++DI ELF+ G L V +D SG+S+G A VV+ RR DA+ AVKK+N+ LDG M ++I
Sbjct: 1 MATGLDMSLDDMIAKNRKS----------RGSGSGPGPTRRNNPNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGKSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 9.230e-20 Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 265 AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGG--TANGASSARGRG 543
AGT V V LN+D+M EDI ELFA G LL ++D+D +GRS G A V+F+RR DA AV +F+ RTLDGT M V+I +GG T + RGRG
Sbjct: 106 AGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGGGATESARGGVRGRG 200
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: M4DUT0_BRARP (RRM domain-containing protein n=6 Tax=Brassiceae TaxID=981071 RepID=M4DUT0_BRARP) HSP 1 Score: 93.2 bits (230), Expect = 9.340e-20 Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
MAT LDMSLDD+IAK KS G G +P ++ KS ++A P +S +A +S F ++ GT + +SNL+Y +M++DI ELF+ G L V +D SGRS+G A VV+ RR DA+ AVKK+N+ LDG M ++I
Sbjct: 1 MATGLDMSLDDMIAKNRKS----------RGSGSQPGPTRRNNTNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A816WET4_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816WET4_BRANA) HSP 1 Score: 91.3 bits (225), Expect = 5.130e-19 Identity = 64/165 (38.79%), Postives = 89/165 (53.94%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
MAT LD SLDD+IAK KS G G +P ++ KS ++A P +S +A +S F ++ GT + VSNL+Y +M++DI ELF+ G L V +D SGRS+G A VV+ RR DA+ AVKK+N+ LDG M ++I
Sbjct: 1 MATGLDKSLDDMIAKNRKS----------RGSGSQPGPTRRNNTNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYVSNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A1Q3B4K6_CEPFO (RRM_1 domain-containing protein/FoP_duplication domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B4K6_CEPFO) HSP 1 Score: 88.6 bits (218), Expect = 8.850e-18 Identity = 69/170 (40.59%), Postives = 88/170 (51.76%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMG----VGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKA-GXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
M + LDMSLDDII KS G S++G+ G G P + P + ++A S A S ++F A G GT + +SNL Y + +EDI ELFA G + V YD SGRSEG A VVF RRADA+ AVK++NN LDG M V+I
Sbjct: 1 MTSALDMSLDDIIKSNKKS--SGPSSRGRGGPRSNTGPGP---SRRFPHRAANRSAPYSIASFEAPDSTWKHDMFTDSAAGYVGKAARASAIETGTKLLISNLEYGVSNEDIKELFAEVGDIKRCGVHYDRSGRSEGTAEVVFARRADAVAAVKRYNNVQLDGKPMKVEI 165
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A6I9QCF7_ELAGV (THO complex subunit 4A isoform X2 n=2 Tax=Cocoseae TaxID=169705 RepID=A0A6I9QCF7_ELAGV) HSP 1 Score: 87.8 bits (216), Expect = 1.600e-17 Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 1
Query: 1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPK--KSGRASKSVVVGNVFMRKAGXXXXXXXXXXX-NAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
M + LDMSLDD+I K+ KK T+A G GR ++ RP G+A S +++ + G GT + +SNL+Y + +EDI ELF+ G L + YD SGRS+G A VVF RRADAL A+K++NN LDG M ++I
Sbjct: 1 MTSSLDMSLDDLI----KNNKKSTAASG----GRXXXXXSGGPTRRFPNRSGNRPGPYSMGKAPDSAWPHDMYANQTGGYSAPAARVSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRADALAAIKRYNNVQLDGKPMKIEI 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1211.3.1 >prot_H-akashiwo_Contig1211.3.1 ID=prot_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=219bp MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQback to top mRNA from alignment at H-akashiwo_Contig1211:178889..179621- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1211.3.1 ID=mRNA_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=733bp|location=Sequence derived from alignment at H-akashiwo_Contig1211:178889..179621- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1211:178889..179621- >mRNA_H-akashiwo_Contig1211.3.1 ID=mRNA_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=657bp|location=Sequence derived from alignment at H-akashiwo_Contig1211:178889..179621- (Heterosigma akashiwo CCMP452)back to top |