prot_H-akashiwo_Contig1211.3.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-akashiwo_Contig1211.3.1
Unique Name	prot_H-akashiwo_Contig1211.3.1
Type	polypeptide
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length	219

Homology

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BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.370e-29
Identity = 82/185 (44.32%), Postives = 106/185 (57.30%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGV--------------GRKPVVVKKAKPTIKSRQTAT--RPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGG 169
            MA +LDM+LDD+IA++T   KK  S +   G+              G +P         + + + A   RP    R + +   G++F R  G           +AGT VEVSNLN+DIMSED+ ELFAT G L +AEV +D SGRS G A VVF RR+DALEA+KKF+ RTLDGT M VK+A  G
Sbjct:    1 MAEELDMALDDLIAERTS--KKPQSGRAASGIQQRRAQRRANATPYGGRPARRAAMDMDVDADRPAVTRRPSVLARNTAAAGSGSIFTRLGGKATP-------SAGTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGAG 176

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BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.450e-22
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0

Query:   89 AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGGTANGASSARG 179
            AGT V V  LN+D+M EDI ELFA  G LL  ++DYD +GRS G A V+F+RR DA  AV +F+ RTLDGT M V+I +GG A  A SARG
Sbjct:  106 AGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGA--AESARG 194

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BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A565CSS4_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CSS4_9BRAS)

HSP 1 Score: 97.8 bits (242), Expect = 2.950e-21
Identity = 68/167 (40.72%), Postives = 95/167 (56.89%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXN--AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            MAT LDMSL+D+IAK  KS  +GT      G G  P+  ++  P  K+ + A  P +S +A +S    +++  ++                GT + +SNL+Y +M+EDI ELFA  G L    V +D SGRS+G A VVF RR DAL AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLEDMIAKNRKS--RGTGPARGSGSGSGPI--RRNNPNRKTNRAA--PYQSAKAPESTWEHDMYSERSEDIAHRSSRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFSRRGDALAAVKKYNDVQLDGKPMKIEI 161

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BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A0D3AKU7_BRAOL (RRM domain-containing protein n=5 Tax=Brassica TaxID=3705 RepID=A0A0D3AKU7_BRAOL)

HSP 1 Score: 95.9 bits (237), Expect = 1.050e-20
Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            MAT LDMSLDD+IAK  KS           G G  P   ++  P  KS ++A  P +S +A +S      F  ++              GT + +SNL+Y +M++DI ELF+  G L    V +D SGRS+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLDDVIAKNRKS----------RGSGSGPGPTRRNNPNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148

[Close]

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: UPI0006AB1C98 (THO complex subunit 4A-like isoform X3 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1C98)

HSP 1 Score: 94.0 bits (232), Expect = 2.040e-20
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            MAT LDMSLDD+IAK  KS           G G  P   ++  P  KS ++A  P +S +A +S      F  ++              GT + +SNL+Y +M++DI ELF+  G L    V +D SG+S+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLDDMIAKNRKS----------RGSGSGPGPTRRNNPNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGKSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148

[Close]

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.230e-20
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 0

Query:   89 AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGG--TANGASSARGRG 181
            AGT V V  LN+D+M EDI ELFA  G LL  ++D+D +GRS G A V+F+RR DA  AV +F+ RTLDGT M V+I +GG  T +     RGRG
Sbjct:  106 AGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGGGATESARGGVRGRG 200

[Close]

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: M4DUT0_BRARP (RRM domain-containing protein n=6 Tax=Brassiceae TaxID=981071 RepID=M4DUT0_BRARP)

HSP 1 Score: 93.2 bits (230), Expect = 9.340e-20
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            MAT LDMSLDD+IAK  KS           G G +P   ++     KS ++A  P +S +A +S      F  ++              GT + +SNL+Y +M++DI ELF+  G L    V +D SGRS+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLDDMIAKNRKS----------RGSGSQPGPTRRNNTNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148

[Close]

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A816WET4_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816WET4_BRANA)

HSP 1 Score: 91.3 bits (225), Expect = 5.130e-19
Identity = 64/165 (38.79%), Postives = 89/165 (53.94%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            MAT LD SLDD+IAK  KS           G G +P   ++     KS ++A  P +S +A +S      F  ++              GT + VSNL+Y +M++DI ELF+  G L    V +D SGRS+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDKSLDDMIAKNRKS----------RGSGSQPGPTRRNNTNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYVSNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148

[Close]

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A1Q3B4K6_CEPFO (RRM_1 domain-containing protein/FoP_duplication domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B4K6_CEPFO)

HSP 1 Score: 88.6 bits (218), Expect = 8.850e-18
Identity = 69/170 (40.59%), Postives = 88/170 (51.76%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMG----VGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKA-GXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            M + LDMSLDDII    KS   G S++G+ G     G  P    +  P   + ++A     S  A  S    ++F   A G             GT + +SNL Y + +EDI ELFA  G +    V YD SGRSEG A VVF RRADA+ AVK++NN  LDG  M V+I
Sbjct:    1 MTSALDMSLDDIIKSNKKS--SGPSSRGRGGPRSNTGPGP---SRRFPHRAANRSAPYSIASFEAPDSTWKHDMFTDSAAGYVGKAARASAIETGTKLLISNLEYGVSNEDIKELFAEVGDIKRCGVHYDRSGRSEGTAEVVFARRADAVAAVKRYNNVQLDGKPMKVEI 165

[Close]

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A6I9QCF7_ELAGV (THO complex subunit 4A isoform X2 n=2 Tax=Cocoseae TaxID=169705 RepID=A0A6I9QCF7_ELAGV)

HSP 1 Score: 87.8 bits (216), Expect = 1.600e-17
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 0

Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPK--KSGRASKSVVVGNVFMRKAGXXXXXXXXXXX-NAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 165
            M + LDMSLDD+I    K+ KK T+A G    GR               ++  RP     G+A  S    +++  + G              GT + +SNL+Y + +EDI ELF+  G L    + YD SGRS+G A VVF RRADAL A+K++NN  LDG  M ++I
Sbjct:    1 MTSSLDMSLDDLI----KNNKKSTAASG----GRXXXXXSGGPTRRFPNRSGNRPGPYSMGKAPDSAWPHDMYANQTGGYSAPAARVSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRADALAAIKRYNNVQLDGKPMKIEI 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2V561_9STRA	2.370e-29	44.32	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A6H5KWS3_9PHAE	4.450e-22	58.24	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A565CSS4_9BRAS	2.950e-21	40.72	RRM domain-containing protein n=1 Tax=Arabis nemor...	[more]
A0A0D3AKU7_BRAOL	1.050e-20	39.39	RRM domain-containing protein n=5 Tax=Brassica Tax...	[more]
UPI0006AB1C98	2.040e-20	38.79	THO complex subunit 4A-like isoform X3 n=1 Tax=Bra...	[more]
D8LLT1_ECTSI	9.230e-20	53.68	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
M4DUT0_BRARP	9.340e-20	38.79	RRM domain-containing protein n=6 Tax=Brassiceae T...	[more]
A0A816WET4_BRANA	5.130e-19	38.79	(rape) hypothetical protein n=1 Tax=Brassica napus...	[more]
A0A1Q3B4K6_CEPFO	8.850e-18	40.59	RRM_1 domain-containing protein/FoP_duplication do...	[more]
A0A6I9QCF7_ELAGV	1.600e-17	37.50	THO complex subunit 4A isoform X2 n=2 Tax=Cocoseae...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 92..164 e-value: 2.2E-10 score: 50.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 95..161 e-value: 4.3E-12 score: 45.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 91..168 score: 14.317041
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 85..190 e-value: 3.5E-19 score: 71.2
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..185
None	No IPR available	PANTHER	PTHR19965:SF72	BNAA10G12880D PROTEIN	coord: 1..185
None	No IPR available	CDD	cd12418	RRM_Aly_REF_like	coord: 95..165 e-value: 7.60848E-29 score: 101.523
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 90..183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig1211	contig	H-akashiwo_Contig1211:178889..179621 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig1211.3.1	mRNA_H-akashiwo_Contig1211.3.1	Heterosigma akashiwo CCMP452	mRNA	H-akashiwo_Contig1211 178889..179621 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-akashiwo_Contig1211.3.1 ID=prot_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=219bp
MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQ
TATRPKKSGRASKSVVVGNVFMRKAGGALVVGGGGGGNAGTTVEVSNLNY
DIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKK
FNNRTLDGTAMTVKIAQGGTANGASSARGRGSLAGSKASLFGTALGQVGA
YSAPVSRGRGGAGARGGGK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf