mRNA_H-akashiwo_Contig1211.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1211.3.1
Unique NamemRNA_H-akashiwo_Contig1211.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.370e-29
Identity = 82/185 (44.32%), Postives = 106/185 (57.30%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGV--------------GRKPVVVKKAKPTIKSRQTAT--RPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGG 507
            MA +LDM+LDD+IA++T   KK  S +   G+              G +P         + + + A   RP    R + +   G++F R  G           +AGT VEVSNLN+DIMSED+ ELFAT G L +AEV +D SGRS G A VVF RR+DALEA+KKF+ RTLDGT M VK+A  G
Sbjct:    1 MAEELDMALDDLIAERTS--KKPQSGRAASGIQQRRAQRRANATPYGGRPARRAAMDMDVDADRPAVTRRPSVLARNTAAAGSGSIFTRLGGKATP-------SAGTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGAG 176          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.450e-22
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  265 AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGGTANGASSARG 537
            AGT V V  LN+D+M EDI ELFA  G LL  ++DYD +GRS G A V+F+RR DA  AV +F+ RTLDGT M V+I +GG A  A SARG
Sbjct:  106 AGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGA--AESARG 194          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A565CSS4_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CSS4_9BRAS)

HSP 1 Score: 97.8 bits (242), Expect = 2.950e-21
Identity = 68/167 (40.72%), Postives = 95/167 (56.89%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXN--AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            MAT LDMSL+D+IAK  KS  +GT      G G  P+  ++  P  K+ + A  P +S +A +S    +++  ++                GT + +SNL+Y +M+EDI ELFA  G L    V +D SGRS+G A VVF RR DAL AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLEDMIAKNRKS--RGTGPARGSGSGSGPI--RRNNPNRKTNRAA--PYQSAKAPESTWEHDMYSERSEDIAHRSSRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFSRRGDALAAVKKYNDVQLDGKPMKIEI 161          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A0D3AKU7_BRAOL (RRM domain-containing protein n=5 Tax=Brassica TaxID=3705 RepID=A0A0D3AKU7_BRAOL)

HSP 1 Score: 95.9 bits (237), Expect = 1.050e-20
Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            MAT LDMSLDD+IAK  KS           G G  P   ++  P  KS ++A  P +S +A +S      F  ++              GT + +SNL+Y +M++DI ELF+  G L    V +D SGRS+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLDDVIAKNRKS----------RGSGSGPGPTRRNNPNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: UPI0006AB1C98 (THO complex subunit 4A-like isoform X3 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1C98)

HSP 1 Score: 94.0 bits (232), Expect = 2.040e-20
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            MAT LDMSLDD+IAK  KS           G G  P   ++  P  KS ++A  P +S +A +S      F  ++              GT + +SNL+Y +M++DI ELF+  G L    V +D SG+S+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLDDMIAKNRKS----------RGSGSGPGPTRRNNPNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGKSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.230e-20
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  265 AGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKIAQGG--TANGASSARGRG 543
            AGT V V  LN+D+M EDI ELFA  G LL  ++D+D +GRS G A V+F+RR DA  AV +F+ RTLDGT M V+I +GG  T +     RGRG
Sbjct:  106 AGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGGGATESARGGVRGRG 200          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: M4DUT0_BRARP (RRM domain-containing protein n=6 Tax=Brassiceae TaxID=981071 RepID=M4DUT0_BRARP)

HSP 1 Score: 93.2 bits (230), Expect = 9.340e-20
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            MAT LDMSLDD+IAK  KS           G G +P   ++     KS ++A  P +S +A +S      F  ++              GT + +SNL+Y +M++DI ELF+  G L    V +D SGRS+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDMSLDDMIAKNRKS----------RGSGSQPGPTRRNNTNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYISNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A816WET4_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816WET4_BRANA)

HSP 1 Score: 91.3 bits (225), Expect = 5.130e-19
Identity = 64/165 (38.79%), Postives = 89/165 (53.94%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKAGXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            MAT LD SLDD+IAK  KS           G G +P   ++     KS ++A  P +S +A +S      F  ++              GT + VSNL+Y +M++DI ELF+  G L    V +D SGRS+G A VV+ RR DA+ AVKK+N+  LDG  M ++I
Sbjct:    1 MATGLDKSLDDMIAKNRKS----------RGSGSQPGPTRRNNTNRKSNRSA--PYQSAKAPESTWEHEAFPSRS-----TRSSAGIETGTKLYVSNLDYGVMNDDIKELFSEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEI 148          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A1Q3B4K6_CEPFO (RRM_1 domain-containing protein/FoP_duplication domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B4K6_CEPFO)

HSP 1 Score: 88.6 bits (218), Expect = 8.850e-18
Identity = 69/170 (40.59%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMG----VGRKPVVVKKAKPTIKSRQTATRPKKSGRASKSVVVGNVFMRKA-GXXXXXXXXXXXNAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            M + LDMSLDDII    KS   G S++G+ G     G  P    +  P   + ++A     S  A  S    ++F   A G             GT + +SNL Y + +EDI ELFA  G +    V YD SGRSEG A VVF RRADA+ AVK++NN  LDG  M V+I
Sbjct:    1 MTSALDMSLDDIIKSNKKS--SGPSSRGRGGPRSNTGPGP---SRRFPHRAANRSAPYSIASFEAPDSTWKHDMFTDSAAGYVGKAARASAIETGTKLLISNLEYGVSNEDIKELFAEVGDIKRCGVHYDRSGRSEGTAEVVFARRADAVAAVKRYNNVQLDGKPMKVEI 165          
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Match: A0A6I9QCF7_ELAGV (THO complex subunit 4A isoform X2 n=2 Tax=Cocoseae TaxID=169705 RepID=A0A6I9QCF7_ELAGV)

HSP 1 Score: 87.8 bits (216), Expect = 1.600e-17
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQTATRPK--KSGRASKSVVVGNVFMRKAGXXXXXXXXXXX-NAGTTVEVSNLNYDIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKKFNNRTLDGTAMTVKI 495
            M + LDMSLDD+I    K+ KK T+A G    GR               ++  RP     G+A  S    +++  + G              GT + +SNL+Y + +EDI ELF+  G L    + YD SGRS+G A VVF RRADAL A+K++NN  LDG  M ++I
Sbjct:    1 MTSSLDMSLDDLI----KNNKKSTAASG----GRXXXXXSGGPTRRFPNRSGNRPGPYSMGKAPDSAWPHDMYANQTGGYSAPAARVSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRADALAAIKRYNNVQLDGKPMKIEI 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1211.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V561_9STRA2.370e-2944.32Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KWS3_9PHAE4.450e-2258.24RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A565CSS4_9BRAS2.950e-2140.72RRM domain-containing protein n=1 Tax=Arabis nemor... [more]
A0A0D3AKU7_BRAOL1.050e-2039.39RRM domain-containing protein n=5 Tax=Brassica Tax... [more]
UPI0006AB1C982.040e-2038.79THO complex subunit 4A-like isoform X3 n=1 Tax=Bra... [more]
D8LLT1_ECTSI9.230e-2053.68RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
M4DUT0_BRARP9.340e-2038.79RRM domain-containing protein n=6 Tax=Brassiceae T... [more]
A0A816WET4_BRANA5.130e-1938.79(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A1Q3B4K6_CEPFO8.850e-1840.59RRM_1 domain-containing protein/FoP_duplication do... [more]
A0A6I9QCF7_ELAGV1.600e-1737.50THO complex subunit 4A isoform X2 n=2 Tax=Cocoseae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1211contigH-akashiwo_Contig1211:178889..179621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3702.AT5G59950.5
PFAMsFoP_duplication,RRM_1
Model size657
Max annot lvl35493|Streptophyta
KEGG koko:K12881
KEGG Pathwayko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG ModuleM00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
Exons2
Evalue6.63e-22
EggNOG OGsKOG0533@1|root,KOG0533@2759|Eukaryota,37PB4@33090|Viridiplantae,3GGKC@35493|Streptophyta,3I075@3699|Brassicales
DescriptionC-terminal duplication domain of Friend of PRMT1
Cds size657
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387122.5806587-CDS-H-akashiwo_Contig1211:178888..1793041681387122.5806587-CDS-H-akashiwo_Contig1211:178888..179304Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1211 178889..179304 -
1681387122.592925-CDS-H-akashiwo_Contig1211:179380..1796211681387122.592925-CDS-H-akashiwo_Contig1211:179380..179621Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1211 179381..179621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1211.3.1prot_H-akashiwo_Contig1211.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1211 178889..179621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1211.3.1

>prot_H-akashiwo_Contig1211.3.1 ID=prot_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=219bp
MATQLDMSLDDIIAKKTKSIKKGTSAKGKMGVGRKPVVVKKAKPTIKSRQ
TATRPKKSGRASKSVVVGNVFMRKAGGALVVGGGGGGNAGTTVEVSNLNY
DIMSEDINELFATCGPLLSAEVDYDASGRSEGGATVVFQRRADALEAVKK
FNNRTLDGTAMTVKIAQGGTANGASSARGRGSLAGSKASLFGTALGQVGA
YSAPVSRGRGGAGARGGGK
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mRNA from alignment at H-akashiwo_Contig1211:178889..179621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1211.3.1 ID=mRNA_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=733bp|location=Sequence derived from alignment at H-akashiwo_Contig1211:178889..179621- (Heterosigma akashiwo CCMP452)
ATGGCAACCCAACTAGATATGTCACTCGATGATATCATCGCCAAAAAAAC GAAGAGTATTAAGAAAGGAACTAGTGCTAAAGGCAAAATGGGAGTCGGCA GGAAACCTGTTGTTGTGAAGAAGGCGAAGCCTACAATCAAGTCCAGGCAA ACTGCCACAAGGCCAAAAAAATCAGGGAGAGCCTCTAAAAGTGTGGTTGT TGGAAACGTGTTCATGAGAAAAGCAGGCGGAGCTCTAGTAGGTGGGGGGC TGCAAGACGTTCTCGTGGAGGGGGGTAAGGCTCGGCAAAGGGATTCTATC TAGGGTTGGTGGAAAAGTTGGCGGTGGCGGTGGTGGTAACGCTGGGACGA CAGTAGAGGTCTCAAACCTCAACTACGATATTATGTCTGAGGACATCAAC GAGCTTTTCGCGACGTGTGGGCCCCTTCTGTCAGCCGAGGTTGACTATGA TGCCAGTGGGCGCTCTGAAGGGGGTGCCACGGTGGTGTTTCAACGACGTG CAGATGCCCTGGAGGCTGTGAAGAAGTTCAATAACCGCACACTAGACGGG ACTGCAATGACTGTGAAGATAGCACAGGGTGGCACGGCAAATGGAGCTTC GTCTGCCCGCGGCAGGGGCTCGTTGGCAGGTAGCAAGGCATCTCTGTTTG GGACAGCCCTCGGCCAAGTAGGGGCATACAGTGCACCCGTCTCCCGAGGA AGAGGTGGGGCTGGAGCCAGAGGTGGCGGGAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1211:178889..179621-

>mRNA_H-akashiwo_Contig1211.3.1 ID=mRNA_H-akashiwo_Contig1211.3.1|Name=mRNA_H-akashiwo_Contig1211.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=657bp|location=Sequence derived from alignment at H-akashiwo_Contig1211:178889..179621- (Heterosigma akashiwo CCMP452)
ATGGCAACCCAACTAGATATGTCACTCGATGATATCATCGCCAAAAAAAC
GAAGAGTATTAAGAAAGGAACTAGTGCTAAAGGCAAAATGGGAGTCGGCA
GGAAACCTGTTGTTGTGAAGAAGGCGAAGCCTACAATCAAGTCCAGGCAA
ACTGCCACAAGGCCAAAAAAATCAGGGAGAGCCTCTAAAAGTGTGGTTGT
TGGAAACGTGTTCATGAGAAAAGCAGGCGGAGCTCTAGTAGTTGGCGGTG
GCGGTGGTGGTAACGCTGGGACGACAGTAGAGGTCTCAAACCTCAACTAC
GATATTATGTCTGAGGACATCAACGAGCTTTTCGCGACGTGTGGGCCCCT
TCTGTCAGCCGAGGTTGACTATGATGCCAGTGGGCGCTCTGAAGGGGGTG
CCACGGTGGTGTTTCAACGACGTGCAGATGCCCTGGAGGCTGTGAAGAAG
TTCAATAACCGCACACTAGACGGGACTGCAATGACTGTGAAGATAGCACA
GGGTGGCACGGCAAATGGAGCTTCGTCTGCCCGCGGCAGGGGCTCGTTGG
CAGGTAGCAAGGCATCTCTGTTTGGGACAGCCCTCGGCCAAGTAGGGGCA
TACAGTGCACCCGTCTCCCGAGGAAGAGGTGGGGCTGGAGCCAGAGGTGG
CGGGAAG
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