mRNA_H-akashiwo_Contig1153.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1153.9.1
Unique NamemRNA_H-akashiwo_Contig1153.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1153.9.1 vs. uniprot
Match: A0A7S2UZW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.300e-7
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:    1 GGKNSYSVKTKIGNWVEHEYKPGQHGRGFQSQQFRTNTQDAMEGGLVIAAPKFG 162
            GGKN+YSV+TK GNWVE E+  G    GF + +F +NT      G+     +FG
Sbjct:   18 GGKNTYSVRTKNGNWVEEEFAGGHMPHGFTNTRFSSNTALQQRDGVGKRQQRFG 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1153.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2UZW9_9STRA3.300e-744.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1153contigH-akashiwo_Contig1153:240700..241143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008877841.1
Model size163
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue6.81e-06
EggNOG OGs2CNKE@1|root,2S413@2759|Eukaryota
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387098.9362545-CDS-H-akashiwo_Contig1153:240700..2407291681387098.9362545-CDS-H-akashiwo_Contig1153:240700..240729Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 240701..240729 -
1681387098.9461-CDS-H-akashiwo_Contig1153:240890..2409691681387098.9461-CDS-H-akashiwo_Contig1153:240890..240969Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 240891..240969 -
1681387098.9553962-CDS-H-akashiwo_Contig1153:241089..2411431681387098.9553962-CDS-H-akashiwo_Contig1153:241089..241143Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 241090..241143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1153.9.1prot_H-akashiwo_Contig1153.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1153 240701..241143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1153.9.1

>prot_H-akashiwo_Contig1153.9.1 ID=prot_H-akashiwo_Contig1153.9.1|Name=mRNA_H-akashiwo_Contig1153.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
GGKNSYSVKTKIGNWVEHEYKPGQHGRGFQSQQFRTNTQDAMEGGLVIAA
PKFG
back to top

mRNA from alignment at H-akashiwo_Contig1153:240700..241143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1153.9.1 ID=mRNA_H-akashiwo_Contig1153.9.1|Name=mRNA_H-akashiwo_Contig1153.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig1153:240700..241143- (Heterosigma akashiwo CCMP452)
GGCGGGAAAAACTCCTATTCTGTGAAAACCAAGATTGGGAACTGGGTTGA
ACACGTAAGAAACTTGAAACACTGAAACACGTGATGATATATTTTTTTGA
AAAGGCAAGGAGCCAATGCTGAACGATCCTCATTCTCTCTAAACACTTTT
TCTTCTCGACTCTTGGCCCAATAGGAGTACAAACCTGGCCAGCATGGGCG
GGGCTTCCAGAGCCAGCAATTTAGGACCAACACACAAGATGCCATGGAAG
GAGGTACAACCTCACCTGTTCATCTTCTTTCCTGTCCTGATTTGGTTCCT
GTTTGCTGGGACTTTTACGTACCTATTCACATGTCTTGTTAATTGTTGTG
CGGCAGTGTGTAAAGCACACATGATGAGGTATGTCATTGGATCTGTGCAT
GTTCAAATGCTCAGGCTTGGTGATAGCTGCACCTAAATTTGGGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1153:240700..241143-

>mRNA_H-akashiwo_Contig1153.9.1 ID=mRNA_H-akashiwo_Contig1153.9.1|Name=mRNA_H-akashiwo_Contig1153.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1153:240700..241143- (Heterosigma akashiwo CCMP452)
GGCGGGAAAAACTCCTATTCTGTGAAAACCAAGATTGGGAACTGGGTTGA
ACACGAGTACAAACCTGGCCAGCATGGGCGGGGCTTCCAGAGCCAGCAAT
TTAGGACCAACACACAAGATGCCATGGAAGGAGGCTTGGTGATAGCTGCA
CCTAAATTTGGG
back to top