mRNA_H-akashiwo_Contig114.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig114.12.1
Unique NamemRNA_H-akashiwo_Contig114.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig114.12.1 vs. uniprot
Match: A0A7S2V3L7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.730e-30
Identity = 153/395 (38.73%), Postives = 181/395 (45.82%), Query Frame = 3 
Query:  351 TAPGPGHYAGATDAPRGPSFSFGGRAKARVRDSSPGPGAYYQGGGER---KGGPAWSIYGRPRELRRNTDXXXXXXXXXXXXXXXXRXGYMGXXXXXXXXXXXXXXXXXXXXPDGHYRGH-------------------GRGPAYSLTGRPTET--VNEEXXXXXXXXXXXXRRQGGTY---MMHGRDSRFHYRPDTNPGPGAYGLGTTVGNAPAFSLSGRIDRRGRDMDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNEG---KGWSLGARTEYQGNGRADXXXXXXXIRPMSAPSGTRKSAAFGKDRRFHNQHSXXXXXXXXXRPSSGLVYTDPTKGISLKGRPKDPRPEGGGEYLYPERTHAGDHAFVGRREFGH 1445
            T PGPG Y G     RGP++S  G+   RV   SPGPGAY    G     KGGPAWS+YG+P + RR  +XXXXXXXX        + GYMG                     D H R H                   G+G A+S+TG+PT+    N+              R+       +M     RFHY    NPGPG YG+ TTVG APAFSLSGR+ R     +                                XXXXXXXXXXX   +G   KG+S+             XXXXXX IRP SAP    K  A G+ +RF     XXXXXXXXX    G V  D  KG+SL  +         GEYLYP RT+AGDHA VGR E+GH
Sbjct:   56 TTPGPGAY-GTGGPNRGPAYSMAGKHGRRVASDSPGPGAYAVNDGRDPRYKGGPAWSLYGKP-QARRRGEXXXXXXXXNHHTGLSKKGGYMG---------------------DKHARAHVPLPXXXXXXXXXXXXDRAGKGLAFSITGKPTDANRYNDSPGPGAYSANRFKARERNVTHAPIMTKSGDRFHYGRSDNPGPGHYGIDTTVGKAPAFSLSGRVGRSNDRDNVPGPGAYRPQSAPPGRGNSKSMGKARRFRDGPXXXXXXXXXXXLRGQGRDTKGFSMSGXXXXXXX-XXXXXXXXXYIRPSSAPLHRPKGGAMGRSQRFRRNXXXXXXXXXXXMTGPGAVRPD--KGVSLHAKLPQHEKRDTGEYLYPRRTYAGDHAMVGREEWGH 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig114.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2V3L7_9STRA7.730e-3038.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig114contigH-akashiwo_Contig114:1007242..1009031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1498
Hectar predicted targeting categoryother localisation
Exons3
Cds size870
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.7302232-UTR-H-akashiwo_Contig114:1007241..10075331681387094.7302232-UTR-H-akashiwo_Contig114:1007241..1007533Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig114 1007242..1007533 +
1681387094.7391322-UTR-H-akashiwo_Contig114:1007653..10078411681387094.7391322-UTR-H-akashiwo_Contig114:1007653..1007841Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig114 1007654..1007841 +
1681387094.7478266-UTR-H-akashiwo_Contig114:1008013..10081441681387094.7478266-UTR-H-akashiwo_Contig114:1008013..1008144Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig114 1008014..1008144 +
1681387094.7663865-UTR-H-akashiwo_Contig114:1009014..10090311681387094.7663865-UTR-H-akashiwo_Contig114:1009014..1009031Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig114 1009015..1009031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.7570496-CDS-H-akashiwo_Contig114:1008144..10090141681387094.7570496-CDS-H-akashiwo_Contig114:1008144..1009014Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig114 1008145..1009014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig114.12.1prot_H-akashiwo_Contig114.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig114 1008145..1009014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig114.12.1

>prot_H-akashiwo_Contig114.12.1 ID=prot_H-akashiwo_Contig114.12.1|Name=mRNA_H-akashiwo_Contig114.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=290bp
MGGKRKTKVDAGRDVPGPGAYRPDGHYRGHGRGPAYSLTGRPTETVNEEA
PGPGAYSADGNRRQGGTYMMHGRDSRFHYRPDTNPGPGAYGLGTTVGNAP
AFSLSGRIDRRGRDMDTPGPGSYVRPSTAPNRRDRSLGTDQRFRYKNNEV
PGPGAYKQPNPNEGKGWSLGARTEYQGNGRADAPGPGAYIRPMSAPSGTR
KSAAFGKDRRFHNQHSSDAPGPGAYRPSSGLVYTDPTKGISLKGRPKDPR
PEGGGEYLYPERTHAGDHAFVGRREFGHGYVGGGGYSAM*
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mRNA from alignment at H-akashiwo_Contig114:1007242..1009031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig114.12.1 ID=mRNA_H-akashiwo_Contig114.12.1|Name=mRNA_H-akashiwo_Contig114.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-akashiwo_Contig114:1007242..1009031+ (Heterosigma akashiwo CCMP452)
CCAGAACTTGATATCACGAGGCTATATGCCAGAAGCCAGAACACTTCACT
CATCCACCCATCCATCCATCCATCCATCCATCCATCTATCCTTCCGGCCA
GCCATTTATTTACTCATCATTCCTTGATTCTCAGTTTTGAGCGAGGAAAA
TAATTTCTTGTGAAGATGCCCGACGGTCCAGCTTGGAGTTTACCCGGCAG
GAAGAAGACCAACAAATGGAATGATGGACCCGGTCCTGGAGAATACACTA
TCCGTGGCGGGGTCGGGGATGGAGGCAAAACAACTTCTTTTGGTATACCA
TCAAGAAGATCTAGAAAAGTTGATGCAGGTGCACATTCAATTAAACGCCT
ACAACTCTTTTCTTGTTATAACCCAACTCAACTTTCTTAATGCTGTTTGA
ATTTGCTCACAGTCAAAAGGGATGGACACAACAGGCTCAAATTATATAAT
TTTCATTGTCATTTACTCCGACAGCTCCCGGGCCTGGTCATTACGCTGGA
GCTACGGATGCTCCTAGAGGACCGTCATTTTCTTTCGGGGGCAGGGCGAA
AGCTAGGGTTCGAGATAGCAGCCCTGGGCCTGGAGCTTACTACCAAGGAG
GTGCGACCTTTTCCTCGACTTATTTTATGTCTGCCTGGTAAAGAACTAAA
GCCATATGACAATGAGTTTAAAGCAGTACCAGCAATACATTGGAAATCAA
TTTTTCATGTCGGCTTGTCCGGGGGATTTTTGAGAGTAGCGTGAAAAATT
TGAAAAAAAAAACTTTTTTCAGGCGGAGAACGGAAGGGTGGGCCTGCCTG
GTCAATCTATGGACGGCCTCGGGAGTTGCGGCGCAATACAGATACCCCTG
GTCCTGGCACCTATCGTGGGGGCGAGTACGGCAAGGACCAACGAGGAGGC
TACATGGGTGGAAAGCGTAAAACCAAGGTCGATGCTGGACGGGATGTGCC
TGGCCCAGGGGCTTATCGCCCTGATGGCCATTATAGAGGCCACGGTCGTG
GTCCTGCCTACAGCCTCACTGGACGCCCAACTGAGACAGTAAACGAAGAA
GCCCCTGGCCCTGGGGCGTACTCGGCAGATGGCAACCGACGCCAAGGTGG
CACATACATGATGCATGGCCGCGATTCCCGCTTCCATTACCGCCCAGACA
CCAACCCAGGTCCTGGCGCGTATGGCCTGGGCACGACAGTTGGGAATGCC
CCGGCCTTCTCGCTATCTGGAAGGATCGACCGCCGGGGCCGCGATATGGA
CACGCCTGGCCCTGGATCATACGTGCGGCCGTCCACTGCACCCAACCGGC
GTGATCGGAGCCTGGGCACCGACCAGAGGTTTCGGTACAAAAATAATGAA
GTGCCTGGGCCAGGTGCATACAAGCAGCCCAATCCCAACGAGGGTAAGGG
CTGGAGCCTTGGAGCCCGTACCGAGTACCAAGGTAATGGAAGGGCGGATG
CCCCTGGTCCAGGAGCATACATCCGGCCCATGTCTGCGCCCTCGGGCACT
CGGAAGTCTGCGGCGTTTGGGAAGGACCGCCGCTTCCACAATCAGCACTC
CTCGGATGCGCCAGGTCCGGGTGCGTACCGCCCGTCGAGCGGCCTGGTGT
ACACGGACCCCACAAAGGGCATCTCTCTCAAGGGGCGCCCCAAAGACCCA
CGGCCCGAGGGGGGCGGGGAGTATCTGTACCCTGAGCGCACGCACGCTGG
GGACCACGCCTTTGTCGGCCGCCGGGAGTTTGGCCACGGTTACGTAGGCG
GTGGCGGCTACTCGGCTATGTGAGGGCAGTTTCAGCTGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig114:1007242..1009031+

>mRNA_H-akashiwo_Contig114.12.1 ID=mRNA_H-akashiwo_Contig114.12.1|Name=mRNA_H-akashiwo_Contig114.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=870bp|location=Sequence derived from alignment at H-akashiwo_Contig114:1007242..1009031+ (Heterosigma akashiwo CCMP452)
ATGGGTGGAAAGCGTAAAACCAAGGTCGATGCTGGACGGGATGTGCCTGG
CCCAGGGGCTTATCGCCCTGATGGCCATTATAGAGGCCACGGTCGTGGTC
CTGCCTACAGCCTCACTGGACGCCCAACTGAGACAGTAAACGAAGAAGCC
CCTGGCCCTGGGGCGTACTCGGCAGATGGCAACCGACGCCAAGGTGGCAC
ATACATGATGCATGGCCGCGATTCCCGCTTCCATTACCGCCCAGACACCA
ACCCAGGTCCTGGCGCGTATGGCCTGGGCACGACAGTTGGGAATGCCCCG
GCCTTCTCGCTATCTGGAAGGATCGACCGCCGGGGCCGCGATATGGACAC
GCCTGGCCCTGGATCATACGTGCGGCCGTCCACTGCACCCAACCGGCGTG
ATCGGAGCCTGGGCACCGACCAGAGGTTTCGGTACAAAAATAATGAAGTG
CCTGGGCCAGGTGCATACAAGCAGCCCAATCCCAACGAGGGTAAGGGCTG
GAGCCTTGGAGCCCGTACCGAGTACCAAGGTAATGGAAGGGCGGATGCCC
CTGGTCCAGGAGCATACATCCGGCCCATGTCTGCGCCCTCGGGCACTCGG
AAGTCTGCGGCGTTTGGGAAGGACCGCCGCTTCCACAATCAGCACTCCTC
GGATGCGCCAGGTCCGGGTGCGTACCGCCCGTCGAGCGGCCTGGTGTACA
CGGACCCCACAAAGGGCATCTCTCTCAAGGGGCGCCCCAAAGACCCACGG
CCCGAGGGGGGCGGGGAGTATCTGTACCCTGAGCGCACGCACGCTGGGGA
CCACGCCTTTGTCGGCCGCCGGGAGTTTGGCCACGGTTACGTAGGCGGTG
GCGGCTACTCGGCTATGTGA
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