mRNA_H-akashiwo_Contig113.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig113.3.1
Unique NamemRNA_H-akashiwo_Contig113.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: A0A8D9E8V4_9HEMI (DNA-directed DNA polymerase n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9E8V4_9HEMI)

HSP 1 Score: 131 bits (330), Expect = 2.600e-32
Identity = 69/171 (40.35%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    4 EQFIEFIMLPENESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVL-KGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            ++F E+++  E++    IAHY+ G+D  F+L      EY V  + KP  +  G K+M+ +   + R++DS NFV APLS+F K F L  E  KGYFPH F+  +N    G IP  ++Y P  M  + R++FL+WH E+V     FDF K+ E YC  DV +LR   L  RE
Sbjct:  598 DEFCEWLISKEHKKYTAIAHYARGYDSHFIL------EYCVRNSIKPKTITNGTKLMSLEA-GKVRIIDSSNFVAAPLSTFPKTFGLK-ELKKGYFPHYFNTVENQSYKGSIPDVKFYSPETMKPSAREEFLKWHAERVSENYYFDFAKELEEYCSSDVDILRRSCLIFRE 760          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: A0A8D8QVL6_9HEMI (DNA-directed DNA polymerase (Fragment) n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8QVL6_9HEMI)

HSP 1 Score: 125 bits (314), Expect = 3.270e-30
Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 1
Query:   34 ENESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVL-KGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            E++    IAHY+ G+D  F+L      EY V  + KP  +  G K+M+ +   + R++DS NFV APLS+F K F L  E  KGYFPH F+  +N    G IP  ++Y P  M  + R++FL+WH E+V     FDF K+ E YC  DV +LR   L  RE
Sbjct:    3 EHKKYTAIAHYARGYDSHFIL------EYCVRNSIKPKTITNGTKLMSLEA-GKVRIIDSSNFVAAPLSTFPKTFGLK-ELKKGYFPHYFNTVENQSYKGSIPDVKFYSPETMKPSAREEFLKWHAERVSENYYFDFAKELEEYCSSDVDILRRSCLIFRE 155          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: UPI0008F99D8C (uncharacterized protein LOC109034071 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F99D8C)

HSP 1 Score: 122 bits (305), Expect = 6.020e-29
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    4 EQFIEFIMLPENE--SALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNP-EYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALR 510
            ++FI  +  P+    S   +AHY SG+D  F+LR     E + P      +  G K+M  +I N    +DS NF+ APLS   K+  +   E +KGYFPH+F+  +N G +GP+P  E Y P+ MS+AGR+ FL W+ ++VE    FDF K+   YC++DV +L +  L  R
Sbjct:  735 KEFIAHLRQPKQHFSSITCVAHYGSGYDFHFILRVLAVEEGWTPAM----ISNGAKLMRVKIGN-ITFIDSLNFLCAPLSKLPKMMSIGDGELNKGYFPHMFNRPENAGYVGPMPPVEMYTPDDMSDAGRRAFLSWYEQKVEEDHVFDFDKELLFYCKLDVEILAKACLKFR 901          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: A0A534A3N4_9GAMM (DNA-directed DNA polymerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534A3N4_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 1.140e-26
Identity = 62/169 (36.69%), Postives = 91/169 (53.85%), Query Frame = 1
Query:   10 FIEFIMLPEN--ESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALR 510
            F++++M      +   +IAH   GFD QFLL+  +      P      +++G KI+  +I N  R +DS ++    LS+  K FDL PE  KGYFPHLF+   N   +GPIPA E+Y P+ M E     F  W+++QV    +FDF+ +   YC  DV +L +  L  R
Sbjct:  478 FMDYVMKARKPFKDVCVIAHNGQGFDFQFLLKYVLEQTKHTPDL----IMRGTKIILMEIDN-VRFIDSLSYFPMALSALPKAFDLPPEKKKGYFPHLFNTEANQNYVGPIPAKEFYCPDNMFEENYGDFEIWYNQQVNENYRFDFQHELVDYCVSDVDILAQACLKFR 641          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: A0A1B6JL89_9HEMI (DNA-directed DNA polymerase (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6JL89_9HEMI)

HSP 1 Score: 106 bits (264), Expect = 3.700e-26
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  148 VLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALR 510
            +++G K++  ++ N  R +DS N+    LS+  K FDL PE  KGYFPHLF+   N   +GPIP  EYY P  M E     F  WH++QV   V FDF+K+   YC  DV +L +  +  R
Sbjct:   16 IMRGTKVILMELDN-VRFIDSLNYFPMALSALNKAFDLPPEKKKGYFPHLFNTLANQNYVGPIPPKEYYCPESMFEKSYTDFENWHNDQVNKNVVFDFQKELIEYCISDVEILAQACIKFR 135          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: A0A653DC59_CALMS (DNA-directed DNA polymerase n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653DC59_CALMS)

HSP 1 Score: 112 bits (280), Expect = 1.310e-25
Identity = 60/155 (38.71%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   52 LIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMS-EAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            +IAH   GFD QF+L   +    F P      +++G K+++  + N  + +DS N+    LS   K F    E SKGYFPHLF+CS N   +GPIPA E+Y P+ +  E  R + L+WH E V     FDF+ +   YC  DV +L +  L  RE
Sbjct:  161 VIAHNGGGFDHQFVLNYILTSTDFTPDL----IMRGTKLISMTVGN-VKFLDSLNYFNMALSKLPKAFGF-AELSKGYFPHLFNCSANKNYVGPIPALEFYNPDNLKDEKARNELLKWHSEMVAQNYVFDFQNEITQYCVSDVDILTQSCLKFRE 309          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: V5G0H8_ANOGL (DNA-directed DNA polymerase (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5G0H8_ANOGL)

HSP 1 Score: 110 bits (274), Expect = 2.570e-25
Identity = 58/173 (33.53%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    1 LEQFIEFIMLPENE--SALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            ++ F+++++    +    +++AH    FD QF L   +      P      +++G KI++  + N  + +DS N+    LS   K F L   + KGYFPHLF+   N   +GP+PAAEYY P+ M    R KFLEWH E  +++  FD ++D   YC  DV +L    L  R+
Sbjct:   57 IDNFLKYVLAARKKFKQVVVVAHNGQAFDHQFCLNYILTKTDLTP----ELIMRGTKIISMVVGN-VKFLDSLNYFPMALSKLPKAFGLGNNFKKGYFPHLFNTVANANYVGPLPAAEYYDPDNMKPEDRSKFLEWHEEHRDDE--FDMQRDLVEYCISDVEILTAACLKFRQ 222          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: UPI0008750553 (uncharacterized protein LOC108913463 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI0008750553)

HSP 1 Score: 106 bits (264), Expect = 1.890e-23
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   25 MLPENESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            M  + +  +++AH    FD QF L   +      P      +++G KI++  + N  + +DS N+    LS   K F L     KGYFPHLF+ ++N   +GP+P AEYY P+ M      KFLEWH E  +++  F+ R+D   YC  DV +L    L  RE
Sbjct:  450 MREKFKQVVVVAHNGQAFDHQFCLNYILTKTDLTP----ELIMRGTKIISMVVGN-VKFLDSLNYFPMALSRLPKAFGLGNNLKKGYFPHLFNTAENQNYVGPLPVAEYYDPDNMKPEDHSKFLEWHEEHKDDE--FNMRRDLVEYCISDVEILTAACLKFRE 605          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: UPI000C7654FF (uncharacterized protein LOC108911068 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C7654FF)

HSP 1 Score: 105 bits (263), Expect = 2.550e-23
Identity = 57/163 (34.97%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   25 MLPENESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            M  + +  +++AH    FD QF L   +      P      +++G KI++  ++N  + +DS N+    LS   K F L     KGYFPHLF+ + N   +GP+PAAEYY P+ M    R KFLEWH E   ++  F+ ++D   YC  DV +L    L  R+
Sbjct:  325 MRKKFKQVVVMAHNGQAFDHQFCLNYILTQTDLTP----ELIMRGTKIISMVMEN-VKFLDSLNYFPMALSKLPKAFGLGDNLKKGYFPHLFNTAANANYVGPLPAAEYYDPDNMKPEDRSKFLEWHEEHKNDE--FNMQRDLVEYCISDVEILTAACLKFRQ 480          
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Match: UPI000C77AB1C (uncharacterized protein LOC111692541 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C77AB1C)

HSP 1 Score: 105 bits (263), Expect = 2.580e-23
Identity = 58/163 (35.58%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   25 MLPENESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMTAQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGVIGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMDVTVLREGMLALRE 513
            M  + +  +++AH    FD QF L   +      P      +++G KI++  + N  + +DS N+    LS   K F L   + K YFPHLF+ S N   +GP+PAAEYY P+ M    R KFLEWH E  ++   FD ++D   YC  DV +L    L  R+
Sbjct:  454 MRKKFKQVVVMAHNGQAFDHQFCLNYILTQTNLTP----ELIMRGTKIISMVVGN-VKFLDSLNYFPMALSKLPKAFGLGNNFKKSYFPHLFNTSANADYVGPLPAAEYYDPDNMKAEDRAKFLEWHEEHRDDV--FDMQRDLVEYCISDVEILTAACLKFRQ 609          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig113.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D9E8V4_9HEMI2.600e-3240.35DNA-directed DNA polymerase n=3 Tax=Cacopsylla mel... [more]
A0A8D8QVL6_9HEMI3.270e-3041.61DNA-directed DNA polymerase (Fragment) n=1 Tax=Cac... [more]
UPI0008F99D8C6.020e-2938.37uncharacterized protein LOC109034071 n=1 Tax=Bemis... [more]
A0A534A3N4_9GAMM1.140e-2636.69DNA-directed DNA polymerase n=1 Tax=Gammaproteobac... [more]
A0A1B6JL89_9HEMI3.700e-2641.32DNA-directed DNA polymerase (Fragment) n=1 Tax=Hom... [more]
A0A653DC59_CALMS1.310e-2538.71DNA-directed DNA polymerase n=1 Tax=Callosobruchus... [more]
V5G0H8_ANOGL2.570e-2533.53DNA-directed DNA polymerase (Fragment) n=1 Tax=Ano... [more]
UPI00087505531.890e-2334.97uncharacterized protein LOC108913463 n=1 Tax=Anopl... [more]
UPI000C7654FF2.550e-2334.97uncharacterized protein LOC108911068 n=1 Tax=Anopl... [more]
UPI000C77AB1C2.580e-2335.58uncharacterized protein LOC111692541 n=1 Tax=Anopl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig113contigH-akashiwo_Contig113:895369..895881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7070.TC011914-PA
PFAMsDNA_pol_B_2
Model size513
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.33e-31
EggNOG OGs2CMGD@1|root,2QQ9V@2759|Eukaryota,39B3J@33154|Opisthokonta,3BKG5@33208|Metazoa,3CTR5@33213|Bilateria,41V8V@6656|Arthropoda,3SQAF@50557|Insecta
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387091.4758656-UTR-H-akashiwo_Contig113:895368..8953921681387091.4758656-UTR-H-akashiwo_Contig113:895368..895392Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig113 895369..895392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387091.4875524-CDS-H-akashiwo_Contig113:895392..8958811681387091.4875524-CDS-H-akashiwo_Contig113:895392..895881Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig113 895393..895881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig113.3.1prot_H-akashiwo_Contig113.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig113 895393..895881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig113.3.1

>prot_H-akashiwo_Contig113.3.1 ID=prot_H-akashiwo_Contig113.3.1|Name=mRNA_H-akashiwo_Contig113.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=163bp
MLPENESALLIAHYSSGFDGQFLLREAIGGEYFVPGNTKPPVLKGQKIMT
AQIQNQCRLVDSYNFVGAPLSSFTKIFDLNPEYSKGYFPHLFSCSKNMGV
IGPIPAAEYYQPNQMSEAGRKKFLEWHHEQVENKVKFDFRKDCESYCQMD
VTVLREGMLALRE
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mRNA from alignment at H-akashiwo_Contig113:895369..895881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig113.3.1 ID=mRNA_H-akashiwo_Contig113.3.1|Name=mRNA_H-akashiwo_Contig113.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig113:895369..895881+ (Heterosigma akashiwo CCMP452)
CTTGAACAGTTTATTGAATTTATTATGCTCCCTGAAAACGAAAGTGCACT TTTGATTGCTCATTATTCCAGTGGATTTGACGGTCAGTTTTTACTAAGAG AAGCAATCGGCGGTGAATATTTTGTTCCCGGAAATACCAAACCGCCAGTG TTAAAGGGGCAGAAAATCATGACGGCTCAGATTCAAAACCAATGCAGATT GGTCGATAGTTACAATTTTGTGGGAGCCCCTCTTTCTTCGTTCACGAAGA TTTTTGATCTCAATCCCGAATACTCAAAGGGGTATTTCCCTCACTTGTTT TCTTGCAGCAAAAACATGGGTGTGATTGGTCCTATCCCTGCTGCGGAATA TTATCAACCGAATCAGATGAGCGAAGCAGGGCGTAAAAAGTTTTTGGAAT GGCATCATGAGCAAGTGGAAAACAAAGTCAAATTTGATTTCAGAAAAGAT TGTGAGAGTTATTGTCAAATGGATGTGACCGTTCTCCGCGAAGGCATGTT GGCGCTACGTGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig113:895369..895881+

>mRNA_H-akashiwo_Contig113.3.1 ID=mRNA_H-akashiwo_Contig113.3.1|Name=mRNA_H-akashiwo_Contig113.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig113:895369..895881+ (Heterosigma akashiwo CCMP452)
ATGCTCCCTGAAAACGAAAGTGCACTTTTGATTGCTCATTATTCCAGTGG
ATTTGACGGTCAGTTTTTACTAAGAGAAGCAATCGGCGGTGAATATTTTG
TTCCCGGAAATACCAAACCGCCAGTGTTAAAGGGGCAGAAAATCATGACG
GCTCAGATTCAAAACCAATGCAGATTGGTCGATAGTTACAATTTTGTGGG
AGCCCCTCTTTCTTCGTTCACGAAGATTTTTGATCTCAATCCCGAATACT
CAAAGGGGTATTTCCCTCACTTGTTTTCTTGCAGCAAAAACATGGGTGTG
ATTGGTCCTATCCCTGCTGCGGAATATTATCAACCGAATCAGATGAGCGA
AGCAGGGCGTAAAAAGTTTTTGGAATGGCATCATGAGCAAGTGGAAAACA
AAGTCAAATTTGATTTCAGAAAAGATTGTGAGAGTTATTGTCAAATGGAT
GTGACCGTTCTCCGCGAAGGCATGTTGGCGCTACGTGAA
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