mRNA_H-akashiwo_Contig1103.10.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A6H5K1C9_9PHAE (Ribosomal_L18A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1C9_9PHAE) HSP 1 Score: 286 bits (731), Expect = 1.030e-95 Identity = 140/184 (76.09%), Postives = 157/184 (85.33%), Query Frame = 3
Query: 15 PNFILSRTMAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTFL 566
P+ I M VMRQYQVVGRKA T +PNPP+YRMKVF+PNEV S+FWY MHQMRKMK+TTGEI+D+ E+TEKN IIKNYGIW++Y+SRSGTHNMYREYRDLTLTGAVDQMYS+MAGRHRCR RSIQIIRTGIVAAKD +RP V Q+ A IKFPL HR+PRA KK R+TFKASRPTTFL
Sbjct: 21 PHGIRLFKMVVMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNSRIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSQMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVKQFHSAKIKFPLTHRLPRAPKKKFRTTFKASRPTTFL 204
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A835YZJ5_9STRA (Ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ5_9STRA) HSP 1 Score: 271 bits (692), Expect = 9.840e-90 Identity = 133/180 (73.89%), Postives = 149/180 (82.78%), Query Frame = 3
Query: 27 LSRTMAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTFL 566
++ M MRQYQVVGRKAPT DPNPP YRMKVF+ +V A S FWY +HQMRKMK+TTGEI+DVNEI EKN IIK+YGIW++Y+SRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCR RSIQIIRTGIVAAKD +R V Q+ + IKFPLAHRIPR +KK R+ FKA RP TF
Sbjct: 28 IASCMPPMRQYQVVGRKAPTEADPNPPAYRMKVFAATKVGAISSFWYLIHQMRKMKKTTGEILDVNEIVEKNARIIKHYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRAPVKQFQNSQIKFPLAHRIPREPSKKFRTVFKAQRPNTFF 207
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A1V9Z1Q2_9STRA (60S ribosomal protein L18a n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Q2_9STRA) HSP 1 Score: 266 bits (680), Expect = 2.300e-88 Identity = 122/175 (69.71%), Postives = 151/175 (86.29%), Query Frame = 3
Query: 39 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
M + QYQVVGRKAPT TDPNPP +RMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+ +NE+ EKN I+KNYGIWI+YNSRSGTHNMY+EYR +TL GAV+QMY+E+AGRHR R RSIQI+RT I+AAKD ++P +QY ++IKFPL+HR+PR A K R+ FKASRPTTF
Sbjct: 1 MPAIHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSNIKFPLSHRVPRPATKNQRTVFKASRPTTF 175
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A7S2XX70_9STRA (60S ribosomal protein L18a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX70_9STRA) HSP 1 Score: 265 bits (678), Expect = 4.480e-88 Identity = 125/172 (72.67%), Postives = 150/172 (87.21%), Query Frame = 3
Query: 48 MRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
MRQYQVVGRKAPTA +P PPL RMK+F+ N V A+SRFWYF+HQMRKMK+TTGEIVDVNEITEKN ++KNYGIWI+YNSRSGTHNM+RE+RDL LTGAVDQ+Y+EM+GRHR RF S+QIIRT ++ AKD +RP + QY + IKFPL H+I RA AKK+R+TFKA+RPTT+
Sbjct: 3 MRQYQVVGRKAPTAAEPKPPLLRMKLFARNPVQAQSRFWYFIHQMRKMKKTTGEIVDVNEITEKNSRVVKNYGIWIRYNSRSGTHNMFREFRDLKLTGAVDQLYAEMSGRHRARFSSVQIIRTAVLDAKDCKRPNITQYHDSKIKFPLTHQIRRAPAKKHRTTFKATRPTTY 174
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: T0R8B2_SAPDV (60S ribosomal protein L18a n=7 Tax=Saprolegniaceae TaxID=4764 RepID=T0R8B2_SAPDV) HSP 1 Score: 263 bits (672), Expect = 3.800e-87 Identity = 121/175 (69.14%), Postives = 151/175 (86.29%), Query Frame = 3
Query: 39 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
M + QYQVVGRKAPT +DPNPP +RMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+ +NE+ EKN I+KNYG+WI+YNSRSGTHNMY+EYRD+TL GAV+QMY+E+AGRHR R RSIQI+RT I+AAKD ++P +QY + IKFPL+HR+PR A K R+ FKASRPTTF
Sbjct: 1 MPAIHQYQVVGRKAPTESDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILCLNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSAIKFPLSHRVPRPANKNQRTVFKASRPTTF 175
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A7S3NKC2_9STRA (60S ribosomal protein L18a n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKC2_9STRA) HSP 1 Score: 260 bits (665), Expect = 4.410e-86 Identity = 126/175 (72.00%), Postives = 145/175 (82.86%), Query Frame = 3
Query: 39 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
M + YQV+GRKAPT DP+PP+YRMK+F+PNEV+ARSRFWYFMHQ RKMKR+TGEI+DVNEI EKN II NYGIW++YNSRSGTHNMYREYR LTLTGAVDQMYSEMAGRHR R RSIQIIRT V K+++R A Y+K ++KFPL HRI R + KK R+TF ASRP TF
Sbjct: 1 MPGFKLYQVIGRKAPTPLDPSPPVYRMKIFAPNEVVARSRFWYFMHQYRKMKRSTGEILDVNEIREKNPRIIHNYGIWLRYNSRSGTHNMYREYRSLTLTGAVDQMYSEMAGRHRARPRSIQIIRTATVKDKELKRVATQMYVKPNLKFPLTHRIMRPSEKKLRTTFAASRPNTF 175
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A5D6XXS3_9STRA (Ribosomal_L18A domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXS3_9STRA) HSP 1 Score: 261 bits (667), Expect = 1.540e-85 Identity = 122/175 (69.71%), Postives = 151/175 (86.29%), Query Frame = 3
Query: 39 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
M ++RQ+QVVGRKAPT +PNPP YRMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+D+NE+TEKN I+KNYGIWI+YNSRSGTHNMY+EYRD+TL AV+Q+Y+E+AGRHR R RSIQI+RT IVAAKD ++ V Q+ + IKFPLA RIPR A K R+ FKA+RPTTF
Sbjct: 59 MNLIRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDINELTEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLARRIPRPATKDQRTVFKANRPTTF 233
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: K3WCT5_GLOUD (60S ribosomal protein L18a n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCT5_GLOUD) HSP 1 Score: 258 bits (658), Expect = 4.960e-85 Identity = 121/172 (70.35%), Postives = 148/172 (86.05%), Query Frame = 3
Query: 48 MRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
+RQ+QVVGRKAPT +PNPP YRMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+DVNE+TEKN I+ NYGIWI+YNSRSGTHNMY+EYRD+TL AV+QMYSE+AGRHR R RSIQI+RT IVAAKD ++ V Q+ + IKFPL+HRI R + K R+ FKA+RPTTF
Sbjct: 3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDVNELTEKNKRIVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLSHRIARPSTKNQRTVFKANRPTTF 174
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A8K1FN02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN02_PYTOL) HSP 1 Score: 258 bits (658), Expect = 4.960e-85 Identity = 119/172 (69.19%), Postives = 149/172 (86.63%), Query Frame = 3
Query: 48 MRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
+RQ+QVVGRKAPT +PNPP YRMK+F+ NEV+A+SRFWYF+HQM+KMK+TTGEI+D+NEITEKN ++ NYGIWI+YNSRSGTHNMY+EYRD+TL AV+Q+Y+E+AGRHR R RSIQI+RT IVAAKD ++ V Q+ A+IKFPL+HRIPR + K +R+ FKASRP TF
Sbjct: 3 IRQFQVVGRKAPTDKEPNPPAYRMKIFAANEVLAKSRFWYFLHQMKKMKKTTGEILDINEITEKNNRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKGNVQQFHDANIKFPLSHRIPRPSIKNHRTVFKASRPCTF 174
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Match: A0A2D4C8D4_PYTIN (60S ribosomal protein L18a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8D4_PYTIN) HSP 1 Score: 264 bits (674), Expect = 1.080e-84 Identity = 124/179 (69.27%), Postives = 152/179 (84.92%), Query Frame = 3
Query: 27 LSRTMAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 563
+S + +R +QVVGRKAPT +PNPP YRMK+F+PN VIA+SRFWYF+HQM+KMK+TTGEI+DVNE+ EKN I+KNYGIWI+YNSRSGTHNMY+EYRDLTL GAVDQ+YSE+AGRHR R RSIQI+RT +VAAKD ++ V Q+ + IKFPL+HRIPR + K +R+ FKASRPTTF
Sbjct: 193 VSDALRQIRHFQVVGRKAPTDKEPNPPAYRMKLFAPNAVIAKSRFWYFLHQMKKMKKTTGEILDVNELVEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDLTLCGAVDQLYSELAGRHRARPRSIQIMRTAVVAAKDTKKANVQQFHDSKIKFPLSHRIPRPSIKNHRTVFKASRPTTF 371 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1103.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1103.10.1 >prot_H-akashiwo_Contig1103.10.1 ID=prot_H-akashiwo_Contig1103.10.1|Name=mRNA_H-akashiwo_Contig1103.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=178bp MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKback to top mRNA from alignment at H-akashiwo_Contig1103:347736..348816- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1103.10.1 ID=mRNA_H-akashiwo_Contig1103.10.1|Name=mRNA_H-akashiwo_Contig1103.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-akashiwo_Contig1103:347736..348816- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1103:347736..348816- >mRNA_H-akashiwo_Contig1103.10.1 ID=mRNA_H-akashiwo_Contig1103.10.1|Name=mRNA_H-akashiwo_Contig1103.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig1103:347736..348816- (Heterosigma akashiwo CCMP452)back to top |