mRNA_H-akashiwo_Contig108.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig108.13.1
Unique NamemRNA_H-akashiwo_Contig108.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A6U3ZPA9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZPA9_9STRA)

HSP 1 Score: 296 bits (758), Expect = 6.860e-97
Identity = 150/259 (57.92%), Postives = 193/259 (74.52%), Query Frame = 1
Query:    7 LFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIEYKPGHVLALEIEGDSTTV--VETKTTQDMADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKKSPFPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVSANEENLKSITLSPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVT 777
            L+AA G PQY+K  A L EA+ +GEG+ +LHIDT    +EY+PGHVLALE+E  +     V++KT++D   NGGWMRGPYTVSR+T+ S D+L+KVVGEKSK F+ A PGT LRFGGKFK+PI+EG+  +   RVV ISTGVG GPCVGAIE A+ ++S FPPI L+ASYR   E++YKDHL+ L  E+ + F W  I+TSE GR+S+  +NL+ +T + F     L  THYHLIGNGQ+V+EFKAGL  AGV D++VT
Sbjct:   30 LYAADGPPQYDKFQATLSEAEKVGEGSFMLHIDT-EDVVEYEPGHVLALEMEAPNADGDDVDSKTSEDAKQNGGWMRGPYTVSRSTDKSIDILVKVVGEKSKLFSIATPGTPLRFGGKFKLPIVEGIDTDTTKRVVLISTGVGVGPCVGAIEKAIEQES-FPPIDLIASYRTEDEIVYKDHLEKLQKEHADKFSWKAIITSEQGRISSTADNLRVLTDTNFKSG--LEDTHYHLIGNGQMVSEFKAGLQAAGVKDDKVT 284          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A7S2EHX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EHX0_9STRA)

HSP 1 Score: 293 bits (749), Expect = 6.100e-96
Identity = 147/238 (61.76%), Postives = 184/238 (77.31%), Query Frame = 1
Query:    7 LFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIEYKPGHVLALEIEGDSTTVVETKTTQDMADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGV-KGNDVDRVVFISTGVGAGPCVGAIETALTKKSP----FPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVSANEENLKSITLSPFGEACCLGATHYHLI 705
            L+A GGAPQY+K+DAVL++A+ +G+G+V+LHIDT   SIEY+PGHVLALEI+G+    +++KT  DM +N GWMRGPYTVSR+TE S DVL+KVVG+KSKRFASA+PGTAL+FGGKFKVPIIEG+  G +V RVV +STGVG GPC+GAIE  L + S     FP ++L ASYR   E++YKDHLD L  E+PE F+W  IV+SE GR+S+NEENL  +  S F     L  THYHLI
Sbjct:   51 LYAEGGAPQYDKIDAVLRQAEVVGDGSVMLHIDTT-TSIEYEPGHVLALEIKGNDDDDIDSKTADDMKNNRGWMRGPYTVSRSTEKSLDVLLKVVGDKSKRFASAKPGTALKFGGKFKVPIIEGIANGENVKRVVLLSTGVGVGPCIGAIEKVLLEGSEDFANFPTVELYASYRTEREIVYKDHLDTLQNEHPERFLWKAIVSSESGRISSNEENLNCLFSSAFARDSSLHDTHYHLI 287          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A7S3Q842_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q842_9STRA)

HSP 1 Score: 294 bits (752), Expect = 8.770e-96
Identity = 151/270 (55.93%), Postives = 197/270 (72.96%), Query Frame = 1
Query:    7 LFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGK---SIEYKPGHVLALEIEGDSTT-------VVETKTTQDMADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKK---SPFPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVSANEENLKSITLSPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVT 777
            +FA GG PQY+K+DAVL+EA+ +GEG V+LH+D   K   +I+Y+PGHV+ALEIE   +            K ++D  +N GWMRGPYTVSRAT  S D+LIKVVG+KS+RF++A PGT L+FGGKFKVPI+EG++  +V  VV +STGVG GPC+GAIE AL+++   + FPPI+L+ASYR  +EV Y DHL+ L  E+P+SF W  +VTS  GR+S++ ENL+    +   E      THYHLIGNGQ+V+EFK GLAKAGV DERVT
Sbjct:   33 IFAEGGPPQYDKIDAVLREAEVVGEGCVMLHMDVKDKDTVTIDYEPGHVVALEIEEVESPSXXXXXXXXXXKNSEDAKNNSGWMRGPYTVSRATADSLDILIKVVGDKSERFSNASPGTPLKFGGKFKVPILEGIQTEEVKNVVLLSTGVGVGPCIGAIEKALSEEYESNNFPPIKLIASYRKESEVAYTDHLNKLQDEHPKSFSWNSVVTSVDGRLSSSTENLEKFLNASSSE------THYHLIGNGQMVSEFKEGLAKAGVSDERVT 296          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A7S1VNF9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNF9_9STRA)

HSP 1 Score: 271 bits (692), Expect = 8.400e-87
Identity = 141/267 (52.81%), Postives = 189/267 (70.79%), Query Frame = 1
Query:    7 LFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIEYKPGHVLALEIEGDSTTVVETKTTQDMADNGGWMRGPYTVSRATE---------TSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKKSPFPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEV-GRVSANEENLKSITLSPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVT 777
            L AA GAPQY+K+DA+LQ+++ + EGT +LH+    + ++YKPG+VLALE++  S  + +     D   NGGWMRGPYTVSR T          +  DV+I+VVG+KSK FA ++PGT +RFGGKFKVPI++G+   +V +VV +STGVG GPCVGAIE A   +S FPPI L  SYR   EV YK+HLD ++++ P  F W PI+TSE  GR+S++++N+  +T S   E   +  THYHLIGNGQ+V+E+KAGL KAGVP ERVT
Sbjct:   31 LKAADGAPQYDKIDAILQQSEKIAEGTYMLHVQVPNQELDYKPGNVLALELQDTSGDLND-----DAKKNGGWMRGPYTVSRYTSNYDSAEGQSSLLDVMIRVVGKKSKAFAESEPGTPVRFGGKFKVPILDGIDKEEVKKVVLLSTGVGVGPCVGAIELARQDES-FPPIALFPSYREWNEVAYKEHLDEIALKNPGKFEWNPIITSEKSGRISSSKKNMDMVTASI--EGLGIAETHYHLIGNGQMVSEWKAGLDKAGVPKERVT 289          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: K0T975_THAOC (FAD-binding FR-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T975_THAOC)

HSP 1 Score: 264 bits (675), Expect = 3.220e-84
Identity = 140/262 (53.44%), Postives = 183/262 (69.85%), Query Frame = 1
Query:    1 SCLFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIEYKPGHVLALEIEGDSTTVV---ETKTTQDMADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKKSPFPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVSANEENLKSITLSPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVT 777
            S L AA   P+Y+K++  L+EA+ +  G+V+LHIDTL +SI+Y+PGHVLALEIE D T      E+KT +D   NGGWMRGPYTVSR +E   +VLIKVVG KS+RF SA+PGT ++FGG+F VPI++G+     DRVV ISTGVG GPC+GAIE AL + S  PPI L+ASYR   EV+  D LD++   +P  F W  I+T   GR+SANE+NL+ +  S F  +  +  TH+HLIGN  LV E KAGL + GVP  +++
Sbjct:   34 SSLCAANEPPKYDKIEGTLREAEEVATGSVMLHIDTL-ESIDYRPGHVLALEIEMDETQRPLDKESKTYKDAQANGGWMRGPYTVSRCSERKLNVLIKVVGTKSRRFQSAEPGTKVKFGGRFHVPILDGIDVASTDRVVMISTGVGVGPCIGAIEMAL-EDSFRPPIDLIASYRSQDEVVCGDILDSMQQSHPSKFAWKSIITELDGRLSANEDNLRLVFESNFDAS--VERTHFHLIGNAALVGEMKAGLEEGGVPPSKIS 291          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A7S3VB97_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB97_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.220e-73
Identity = 118/200 (59.00%), Postives = 152/200 (76.00%), Query Frame = 1
Query:  187 TKTTQDMADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKK---SPFPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVSANEENLKSITLSPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVT 777
            +K ++D  +N GWMRGPYTVSRAT  S D+LIKVVG+KS+RF++A PGT L+FGGKFKVPI+EG++  +V  VV +STGVG GPC+GAIE AL+++   + FPPI+L+ASYR  +EV Y DHL+ L  E+P+SF W  +VTS  GR+S++ ENL+    +   E      THYHLIGNGQ+V+EFK GLAKAGV DERVT
Sbjct:  157 SKNSEDAKNNSGWMRGPYTVSRATADSLDILIKVVGDKSERFSNASPGTPLKFGGKFKVPILEGIQTEEVKNVVLLSTGVGVGPCIGAIEKALSEEYESNNFPPIKLIASYRKESEVAYTDHLNKLQDEHPKSFSWNSVVTSVDGRLSSSTENLEKFLNASSSE------THYHLIGNGQMVSEFKEGLAKAGVSDERVT 350          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A7S2UBV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBV9_9STRA)

HSP 1 Score: 227 bits (579), Expect = 9.660e-71
Identity = 117/207 (56.52%), Postives = 156/207 (75.36%), Query Frame = 1
Query:    1 SCLFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIEYKPGHVLALEIEGDSTTVVETKTTQDMADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKKSPFPPIQLVASYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVS 621
            S LFA GGAPQY+K++AVL+ A+ L +G+V+LHI T   +I+Y+PG+VLALEIEG+   + E +  +D   NGG++RGPYTVSRATE S D+LIKVVG+KSK FA+A+ GT ++FGGKFKVPI+EG++  +  RVV ISTGVG GPCVGA+E AL K   FPP++L A YR++ E++Y  +LD L  E    F W  +V+SE GR+S
Sbjct:   46 SKLFAEGGAPQYDKIEAVLKHAEVLSKGSVMLHIAT-DTAIDYQPGNVLALEIEGN-LNLSELEEKEDAKTNGGFLRGPYTVSRATEKSLDILIKVVGDKSKMFANAEAGTPVKFGGKFKVPIVEGIQKEETKRVVLISTGVGVGPCVGAVEEAL-KDDSFPPVELCACYRNSDEIVYGTYLDELQAENLGRFSWKAVVSSESGRLS 249          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A448ZQK5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQK5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 7.340e-58
Identity = 130/298 (43.62%), Postives = 169/298 (56.71%), Query Frame = 1
Query:   25 APQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIE-YKPGHVLALEIEG------DSTTVVET-----KTTQDMADNGGWMRGPYTVSRATETS-----------FDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGV----KGNDVD------RVVFISTGVGAGPCVGAIETALT-------KKSPFPPIQLVASYRHNAEVLYKDHLDALSMEY----PESFVWTPIVTSEVGRVSAN-EENLKSITLSP-FGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVTT 780
            +PQY+K + +L+ ++ +G+G+ +L+ID +      YKPGHVLALEI+       D   V ET     KT +DM  N GWMRGPYTVSR   TS           F VL+K VG KS  F++   GT +R+GGKFKVPI EG+    + ND +      RV+ +STGVG GPC+GA E  +        K+S    I LV S+R   E+     LD L  +     PE F W  I+T E GR+SA+  E L    +SP       +  THYH+IGNGQLVNE+ AGL +AGVP  RVTT
Sbjct:   62 SPQYQKQEGILRRSECVGKGSYLLYIDCVDDDTNGYKPGHVLALEIQPPAVDGCDDVEVSETMTMNEKTRKDMEANEGWMRGPYTVSRGYGTSSEINGKAKNDGFQVLVKEVGYKSHVFSTCPEGTPVRYGGKFKVPIAEGILEAAETNDSEDRGATKRVIMVSTGVGVGPCLGASEILVNMLTSSDAKESTIHSINLVTSFRTREEIAMASDLDKLQQQQQGRNPE-FHWESIITGETGRLSASGPECLLDQYVSPAISTGSAIRNTHYHIIGNGQLVNEWTAGLEQAGVPPSRVTT 358          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A1E7EY24_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EY24_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.090e-57
Identity = 130/323 (40.25%), Postives = 174/323 (53.87%), Query Frame = 1
Query:    7 LFAAGGAPQYEKLDAVLQEAKFLGEGTVILHIDTLGKSIE-----------YKPGHVLALEIEGDSTTVVET-------------KTTQDMADNGGWMRGPYTVSRATETS-----------FDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVK-GNDVD------------RVVFISTGVGAGPCVGAIETALTKKSPFPP--------IQLVASYRHNAEVLYKDHLDALSME---YPESFVWTPIVTSEVGRVSANEEN------LKSITLSPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVTT 780
            LFA GGAPQY+K   VLQ ++ +G+G+ +LHID   K              Y+PGHVLALEI+    T  ++             KT +D+ +N GW+RGPYTVSR   +S           F VLI+ VG KS   A++ P T ++FGG+FKVPI+EG++  + VD            RVV ISTGVG GPC+GAIE  L+  +            I L+AS+R   E+   D L+ L  +     + F W  ++T EVGR+S N  +      L+          C +  THYH+IGNGQLVNE+  GLAKAGV  +RVTT
Sbjct:   41 LFAEGGAPQYQKQRGVLQRSEAVGKGSYLLHIDYDKKFNNEEEENDFEDGYYQPGHVLALEIQPPPATTDDSLSSSTSFNATMNDKTKRDLNNNDGWLRGPYTVSRGYGSSDSNDDNNNSPGFQVLIREVGYKSNVLATSIPSTPVQFGGRFKVPIVEGIRMASQVDNEDDKENVDTTRRVVMISTGVGIGPCIGAIELLLSPSADDEDNNNDNDIAIDLIASFRTQDEIAMTDDLNRLQSDARSLGKQFNWKAVITEEVGRLSLNSPDVLLDRYLQRDDNDDDDNLCMIRNTHYHIIGNGQLVNEWTKGLAKAGVAKKRVTT 363          
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Match: A0A1E7FCS8_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCS8_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.120e-55
Identity = 132/321 (41.12%), Postives = 176/321 (54.83%), Query Frame = 1
Query:    7 LFAAGGAPQYEKLDAVLQEAKFLGEGTVILHID---TLGKSIE--------YKPGHVLALEIEGDSTTVVET-------------KTTQDMADNGGWMRGPYTVSRATETS-----------FDVLIKVVGEKSKRFASAQPGTALRFGGKFKVPIIEGVK-GNDVD------------RVVFISTGVGAGPCVGAIETALTKKSPFPP----IQLVASYRHNAEVLYKDHLDALSME---YPESFVWTPIVTSEVGRVSANEEN-LKSITLS-------PFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVTT 780
            LFA GGAPQY+K   VLQ ++ +G+G+ +LHID         E        Y+PGHVLALEI+    T  ++             KT +D+ +N GW+RGPYTVSR   +S           F VLI+ VG KS   A++ PGT ++FGG+FKVPI+EG++  + VD            RVV ISTGVG GPC+GAIE  L+  +        I L+AS+R   E+   D L+ L  +     + F W  ++T EVGR+S N  + L+   L             C +  THYH+IGNGQLVNE+  GLAKAGV  +RVTT
Sbjct:   41 LFAEGGAPQYQKQRGVLQRSEAVGKGSYLLHIDYDKNYNNEEEENDFEDGYYQPGHVLALEIQPPPATTDDSLSSSTSFNATMNEKTKRDLNNNDGWLRGPYTVSRGYGSSDSNDDNNNSPGFQVLIREVGYKSNVLATSIPGTPVQFGGRFKVPIVEGIRMASQVDNEDDKENVDTTRRVVMISTGVGIGPCIGAIELLLSSSADDEDNDIAIDLIASFRTQDEIAMTDDLNRLQSDARSLGKQFNWKAVITEEVGRLSLNSPDVLRDRYLQRDDNDNXXXDNLCMIRNTHYHIIGNGQLVNEWSKGLAKAGVAKKRVTT 361          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig108.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U3ZPA9_9STRA6.860e-9757.92Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2EHX0_9STRA6.100e-9661.76Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S3Q842_9STRA8.770e-9655.93Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1VNF9_9STRA8.400e-8752.81Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
K0T975_THAOC3.220e-8453.44FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A7S3VB97_9STRA1.220e-7359.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UBV9_9STRA9.660e-7156.52Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A448ZQK5_9STRA7.340e-5843.62Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7EY24_9STRA1.090e-5740.25Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1E7FCS8_9STRA1.120e-5541.12Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig108contigH-akashiwo_Contig108:1174775..1175622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0T975
Preferred nameKRT76
PFAMsDUF148,Filament,Keratin_2_head
Model size848
Max annot lvl2759|Eukaryota
KEGG koko:K05747,ko:K07604,ko:K07605,ko:K14317
KEGG TC1.I.1
KEGG Pathwayko03013,ko04062,ko04144,ko04520,ko04530,ko04666,ko04810,ko04915,ko05100,ko05130,ko05131,ko05132,ko05169,ko05231,map03013,map04062,map04144,map04520,map04530,map04666,map04810,map04915,map05100,map05130,map05131,map05132,map05169,map05231
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.98e-63
EggNOG OGs2CMXB@1|root,2QSI5@2759|Eukaryota
Descriptionstructural molecule activity
Cds size606
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko04131,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.5807369-UTR-H-akashiwo_Contig108:1174774..11749781681387070.5807369-UTR-H-akashiwo_Contig108:1174774..1174978Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig108 1174775..1174978 +
1681387070.5988204-UTR-H-akashiwo_Contig108:1175584..11756221681387070.5988204-UTR-H-akashiwo_Contig108:1175584..1175622Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig108 1175585..1175622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.5907333-CDS-H-akashiwo_Contig108:1174978..11755841681387070.5907333-CDS-H-akashiwo_Contig108:1174978..1175584Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig108 1174979..1175584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig108.13.1prot_H-akashiwo_Contig108.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig108 1174979..1175584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig108.13.1

>prot_H-akashiwo_Contig108.13.1 ID=prot_H-akashiwo_Contig108.13.1|Name=mRNA_H-akashiwo_Contig108.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=202bp
MADNGGWMRGPYTVSRATETSFDVLIKVVGEKSKRFASAQPGTALRFGGK
FKVPIIEGVKGNDVDRVVFISTGVGAGPCVGAIETALTKKSPFPPIQLVA
SYRHNAEVLYKDHLDALSMEYPESFVWTPIVTSEVGRVSANEENLKSITL
SPFGEACCLGATHYHLIGNGQLVNEFKAGLAKAGVPDERVTTNHTSITRH
Q*
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mRNA from alignment at H-akashiwo_Contig108:1174775..1175622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig108.13.1 ID=mRNA_H-akashiwo_Contig108.13.1|Name=mRNA_H-akashiwo_Contig108.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=848bp|location=Sequence derived from alignment at H-akashiwo_Contig108:1174775..1175622+ (Heterosigma akashiwo CCMP452)
TCCTGCCTTTTTGCAGCAGGTGGGGCGCCCCAGTATGAAAAGCTAGATGC AGTATTGCAAGAAGCCAAGTTTTTGGGGGAGGGAACCGTTATTCTTCACA TTGATACACTTGGAAAATCTATTGAATATAAGCCAGGCCATGTGTTGGCA TTAGAAATCGAAGGTGATTCCACAACAGTAGTCGAAACAAAGACTACGCA GGACATGGCTGACAACGGAGGATGGATGCGTGGGCCCTATACTGTCAGCC GCGCGACAGAAACGTCATTTGATGTTCTCATCAAGGTTGTGGGAGAAAAA TCAAAGCGCTTTGCTTCTGCCCAGCCTGGAACAGCCCTCAGGTTTGGTGG TAAATTTAAGGTGCCCATCATTGAGGGAGTCAAAGGTAATGATGTGGACA GGGTTGTTTTCATCTCAACAGGTGTTGGTGCTGGGCCATGTGTGGGCGCC ATTGAGACCGCATTAACAAAGAAAAGTCCCTTTCCTCCGATTCAACTGGT AGCAAGCTACAGACACAATGCAGAAGTTTTGTACAAAGACCATTTGGACG CACTCAGCATGGAGTATCCAGAGAGTTTTGTGTGGACGCCGATTGTAACA AGTGAGGTTGGCAGGGTTTCTGCAAATGAGGAAAATCTGAAAAGCATCAC GCTCTCTCCTTTTGGAGAAGCATGTTGTCTTGGTGCTACCCACTATCACT TGATTGGAAACGGACAACTTGTCAATGAATTTAAAGCAGGGCTAGCAAAA GCTGGAGTGCCTGATGAGAGAGTCACAACGAATCATACTTCAATCACCAG GCACCAGTGAGCGATGAGGTAGTTGGAAGAATAGCAGAAGCTGTTCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig108:1174775..1175622+

>mRNA_H-akashiwo_Contig108.13.1 ID=mRNA_H-akashiwo_Contig108.13.1|Name=mRNA_H-akashiwo_Contig108.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=606bp|location=Sequence derived from alignment at H-akashiwo_Contig108:1174775..1175622+ (Heterosigma akashiwo CCMP452)
ATGGCTGACAACGGAGGATGGATGCGTGGGCCCTATACTGTCAGCCGCGC
GACAGAAACGTCATTTGATGTTCTCATCAAGGTTGTGGGAGAAAAATCAA
AGCGCTTTGCTTCTGCCCAGCCTGGAACAGCCCTCAGGTTTGGTGGTAAA
TTTAAGGTGCCCATCATTGAGGGAGTCAAAGGTAATGATGTGGACAGGGT
TGTTTTCATCTCAACAGGTGTTGGTGCTGGGCCATGTGTGGGCGCCATTG
AGACCGCATTAACAAAGAAAAGTCCCTTTCCTCCGATTCAACTGGTAGCA
AGCTACAGACACAATGCAGAAGTTTTGTACAAAGACCATTTGGACGCACT
CAGCATGGAGTATCCAGAGAGTTTTGTGTGGACGCCGATTGTAACAAGTG
AGGTTGGCAGGGTTTCTGCAAATGAGGAAAATCTGAAAAGCATCACGCTC
TCTCCTTTTGGAGAAGCATGTTGTCTTGGTGCTACCCACTATCACTTGAT
TGGAAACGGACAACTTGTCAATGAATTTAAAGCAGGGCTAGCAAAAGCTG
GAGTGCCTGATGAGAGAGTCACAACGAATCATACTTCAATCACCAGGCAC
CAGTGA
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