mRNA_H-akashiwo_Contig1056.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1056.5.1
Unique NamemRNA_H-akashiwo_Contig1056.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6V1P5X7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P5X7_HETAK)

HSP 1 Score: 350 bits (897), Expect = 8.030e-115
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 516
            PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV
Sbjct:   91 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 262          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5KGV1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.220e-36
Identity = 66/172 (38.37%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 516
            PS W   ++  LFK  D  D  NYRGI+LL+ +GK+FC ++N+ +   +E  H +S+ Q GFR+KRGC +  F +   ++   +R G+  +C F+D +KAYD+V  + LWK+L   G+  K+  +L+ + +  +  V  D +LS  F  + GV QGC LSP +F +FI++L+
Sbjct:  142 PSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLL 312          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: UPI001E1E1F32 (uncharacterized protein LOC123553993 isoform X1 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1F32)

HSP 1 Score: 141 bits (356), Expect = 8.300e-36
Identity = 66/172 (38.37%), Postives = 110/172 (63.95%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCRE-QSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDEL 513
            P +W   +I PLFK +DP+D NNYRGI+L+SC  K+F  ++N+ +   +ES +++SD Q GFR+  GC    +  +L+A+++       R  CAF+DF KA+DS+  + LW +L  LG+      ++R +Y KV+  +R     SD F   +G++QG ++SP++F+LF+++L
Sbjct:  366 PDSWMEGIIVPLFKKNDPSDVNNYRGITLVSCFSKIFTGVLNKRISNWIESNNIISDAQFGFRK--GCSTVDAIFVLNAIISKVLSENGRLACAFIDFSKAFDSIYRNGLWYKLHQLGITGNTLRIIRDMYSKVKACIRGCKSYSDFFECSMGLKQGEVISPLLFSLFLEDL 535          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: UPI0007381EC2 (uncharacterized protein LOC107046505 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007381EC2)

HSP 1 Score: 141 bits (356), Expect = 8.370e-36
Identity = 64/171 (37.43%), Postives = 108/171 (63.16%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDEL 513
            P +W+ V ++ ++K  D  D  NYRGI+L++C+ KLF +++   +    E   ++ + Q GFRRK+GC++  + L SA+    R   R  +  FVD++KA+DSV H +LW++L  LG+  K+  +++S+YD+    V+ D+QL+D      GV QG ILSP++F LF+ ++
Sbjct:  757 PESWSQVTLTMIYKKGDERDPANYRGIALVNCIAKLFTTVLKNRLELWEEKLKIIPEYQAGFRRKKGCQDNIYTLFSAIHLQLRLTKRSVYGLFVDYQKAFDSVSHDILWRKLHELGVSAKMLRIIKSLYDRASMKVKMDSQLTDPIAITQGVLQGEILSPLLFILFVHDI 927          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5JMB0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB0_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 9.960e-36
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFID 507
            PS W   ++  LFK  D  D  NYRGI+LL+ +GK+FC ++N+ +   +E  H +S+ Q GFR+KRGC +  F +   ++   +R G+  +C F+D +KAYD+V  + LWK+L   G+  K+  +L+ + +  +  V  D +LS  F  + GV QGC LSP +F +FI+
Sbjct:  190 PSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFIN 357          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5KYR3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR3_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.140e-35
Identity = 65/172 (37.79%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 516
            PS W   ++  LFK  D  D  NYRGI+LL+ +GK+FC ++N+ +   +E  H +S+ Q GFR+KRGC +  F +   ++   +R G+  +C F+D +KAYD+V  + LWK+L   G+   +  +L+ + + ++  V  D +LS  F  + GV QGC LSP +F +FI++L+
Sbjct:  201 PSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGTMWRVLKKMTECMKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLL 371          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5GUJ7_9HEMI (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GUJ7_9HEMI)

HSP 1 Score: 135 bits (341), Expect = 1.370e-35
Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDE 510
            P+ W  +    LFK  DP++  NYRGISLL+CL K+F  I+ E +   VES  L+ + Q GFR+ RGC +  F+L S +    R + R+  CAFVDF +A+D+V H VLW +L+ LG+ P+   ++R++Y+    +VR     +  F    G+ QG ILSP++F L + +
Sbjct:   23 PAEWGSIKTFLLFKKGDPSNVANYRGISLLNCLAKIFTRILYERLVVFVESKSLIPETQNGFRKGRGCADNVFVLSSLVNINTRLKRRKVFCAFVDFFRAFDAVSHPVLWGKLEWLGVSPRFISVIRALYEGASFSVRVGAASTRPFRLSQGILQGDILSPLLFALLLAD 192          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5JUL8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.870e-35
Identity = 66/172 (38.37%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 516
            PS W   ++  LFK  D  D  NYRGI+LL+ +GK+FC ++N+ +   +E  H +S+ Q GFR+KRGC +  F +   ++   +R G+  +C F+D +KAYD+V  + LWK+L   G+  K+  +L+ + +  +  V  D +LS  F  + GV QGC LSP +F +FI++L+
Sbjct:  111 PSRWREEVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLL 281          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5KXP1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.910e-35
Identity = 66/172 (38.37%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 516
            PS W   +   LFK  D  D  NYRGI+LL+ +GK+FC ++N+ +   +E  H +S+ Q GFR+KRGC +  F +   ++   +R G+  +C F+D RKAY++V  + LWK+L   G+  K+  +L+ + +  +  V  D +LS  F  + GV QGC LSP +F +FI++L+
Sbjct:   26 PSRWREGVAVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVRKAYNTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLL 196          
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Match: A0A6H5JCP6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.160e-35
Identity = 66/172 (38.37%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    1 PSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELV 516
            PS W   ++  LFK  D  D  NYRGI+LL+ +GK+FC ++N+ +   +E  H +S+ Q GFR+KRGC +  F +   ++   +R G+  +C F+D +KAYD+V  + LWK+L   G+  K+  +L+ + +  +  V  D +LS  F  + GV QGC LSP +F +FI++L+
Sbjct:  214 PSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLL 384          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1056.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P5X7_HETAK8.030e-115100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KGV1_9PHAE2.220e-3638.37Reverse transcriptase domain-containing protein n=... [more]
UPI001E1E1F328.300e-3638.37uncharacterized protein LOC123553993 isoform X1 n=... [more]
UPI0007381EC28.370e-3637.43uncharacterized protein LOC107046505 n=1 Tax=Diach... [more]
A0A6H5JMB0_9PHAE9.960e-3638.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYR3_9PHAE1.140e-3537.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5GUJ7_9HEMI1.370e-3540.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUL8_9PHAE2.870e-3538.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KXP1_9PHAE3.910e-3538.37Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCP6_9PHAE4.160e-3538.37Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1056contigH-akashiwo_Contig1056:203291..203806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7668.SPU_013001-tr
PFAMsRVT_1
Model size516
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.78e-30
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39N4Q@33154|Opisthokonta,3BSEH@33208|Metazoa,3D91U@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size495
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387064.963898-UTR-H-akashiwo_Contig1056:203290..2033111681387064.963898-UTR-H-akashiwo_Contig1056:203290..203311Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1056 203291..203311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387064.9757802-CDS-H-akashiwo_Contig1056:203311..2038061681387064.9757802-CDS-H-akashiwo_Contig1056:203311..203806Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1056 203312..203806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1056.5.1prot_H-akashiwo_Contig1056.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1056 203312..203806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1056.5.1

>prot_H-akashiwo_Contig1056.5.1 ID=prot_H-akashiwo_Contig1056.5.1|Name=mRNA_H-akashiwo_Contig1056.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=165bp
MISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSD
LQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDSVKHS
VLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGC
ILSPIIFNLFIDELV
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mRNA from alignment at H-akashiwo_Contig1056:203291..203806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1056.5.1 ID=mRNA_H-akashiwo_Contig1056.5.1|Name=mRNA_H-akashiwo_Contig1056.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=516bp|location=Sequence derived from alignment at H-akashiwo_Contig1056:203291..203806+ (Heterosigma akashiwo CCMP452)
CCTTCAACGTGGAATGTTGTTATGATCTCTCCGTTATTTAAAAGCGATGA TCCAAATGATACCAACAATTATCGGGGAATATCGCTGCTATCTTGTCTGG GCAAGCTATTTTGCTCAATAATAAACGAGTTTGTTTACACCCAGGTTGAG TCGGCCCATTTGTTGTCAGACTTACAGGGCGGTTTTAGGAGAAAAAGGGG ATGCCGCGAACAAAGCTTTCTACTGCTTAGTGCATTGTTAACAGCAAATA GAAGGAGGGGTAGACGTGCACACTGTGCGTTTGTTGATTTTCGAAAGGCA TATGACTCCGTCAAACATAGTGTATTATGGAAGCGGCTTGACTCGTTGGG TCTGGGTCCAAAACTAACTGAACTTCTCCGTAGCATTTACGATAAAGTCA GATGTACTGTGAGAAAAGATAATCAACTGTCCGACTTGTTTCCTTATGAT ATCGGGGTCCGGCAAGGATGTATTCTATCCCCAATCATTTTTAATTTATT TATTGACGAACTTGTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1056:203291..203806+

>mRNA_H-akashiwo_Contig1056.5.1 ID=mRNA_H-akashiwo_Contig1056.5.1|Name=mRNA_H-akashiwo_Contig1056.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=495bp|location=Sequence derived from alignment at H-akashiwo_Contig1056:203291..203806+ (Heterosigma akashiwo CCMP452)
ATGATCTCTCCGTTATTTAAAAGCGATGATCCAAATGATACCAACAATTA
TCGGGGAATATCGCTGCTATCTTGTCTGGGCAAGCTATTTTGCTCAATAA
TAAACGAGTTTGTTTACACCCAGGTTGAGTCGGCCCATTTGTTGTCAGAC
TTACAGGGCGGTTTTAGGAGAAAAAGGGGATGCCGCGAACAAAGCTTTCT
ACTGCTTAGTGCATTGTTAACAGCAAATAGAAGGAGGGGTAGACGTGCAC
ACTGTGCGTTTGTTGATTTTCGAAAGGCATATGACTCCGTCAAACATAGT
GTATTATGGAAGCGGCTTGACTCGTTGGGTCTGGGTCCAAAACTAACTGA
ACTTCTCCGTAGCATTTACGATAAAGTCAGATGTACTGTGAGAAAAGATA
ATCAACTGTCCGACTTGTTTCCTTATGATATCGGGGTCCGGCAAGGATGT
ATTCTATCCCCAATCATTTTTAATTTATTTATTGACGAACTTGTC
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