mRNA_H-akashiwo_Contig1038.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1038.4.1
Unique NamemRNA_H-akashiwo_Contig1038.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1038.4.1 vs. uniprot
Match: A0A7S3YK38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK38_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 4.320e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:    3 VSSGRHGRQTGAGNHQQANAGYQVPQQQFRRPNNHQQATRSPQYQASS 146
            VSSGRHGRQTGAGNHQQANAGYQVPQQQFRRPNNHQQATRSPQYQASS
Sbjct:   19 VSSGRHGRQTGAGNHQQANAGYQVPQQQFRRPNNHQQATRSPQYQASS 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1038.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YK38_HETAK4.320e-22100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1038contigH-akashiwo_Contig1038:214085..214713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size148
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.0355515-UTR-H-akashiwo_Contig1038:214084..2141021681387059.0355515-UTR-H-akashiwo_Contig1038:214084..214102Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1038 214085..214102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.0458794-CDS-H-akashiwo_Contig1038:214102..2141971681387059.0458794-CDS-H-akashiwo_Contig1038:214102..214197Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 214103..214197 +
1681387059.056881-CDS-H-akashiwo_Contig1038:214679..2147131681387059.056881-CDS-H-akashiwo_Contig1038:214679..214713Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 214680..214713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1038.4.1prot_H-akashiwo_Contig1038.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1038 214103..214713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1038.4.1

>prot_H-akashiwo_Contig1038.4.1 ID=prot_H-akashiwo_Contig1038.4.1|Name=mRNA_H-akashiwo_Contig1038.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=43bp
MAGKPAPGTTSRLMLATKYPSSSSDAQITISRLLVAHSTKLPP
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mRNA from alignment at H-akashiwo_Contig1038:214085..214713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1038.4.1 ID=mRNA_H-akashiwo_Contig1038.4.1|Name=mRNA_H-akashiwo_Contig1038.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=629bp|location=Sequence derived from alignment at H-akashiwo_Contig1038:214085..214713+ (Heterosigma akashiwo CCMP452)
GGGTCTCCTCTGGCCGGCATGGCCGGCAAACCGGCGCCGGGAACCACCAG
CAGGCTAATGCTGGCTACCAAGTACCCCAGCAGCAGTTCAGACGCCCAAA
TAACCATCAGCAGGTGATATCCAATGCATATGTATCTCCCCCACCACTAA
ACAATGGTCAAATCCCAAATCTAGGTGCCCCCAAACCCCATTTTAAATAT
GCTACACCCTCTCTGTAGTCTCTCTATTTCAGCCCTACCTTCCTACACTT
TATGACTTTTCAAAAAGAAGTGGAACCAATGTGCATGAAACCCAGCAGAA
CTTCTCCACTGCCACATACACCGCCCCTCCCATTTTTATCGCCATTTGAA
CCAACTGGCACTGCCATTCCTGCCAAAGCCATTCAAACGACCCCTCCGAT
AACTGGTACTAGCCCATTTCGTCCACAAACGTGGCGAAGAAGATCCGCTC
TTCCCTCACGCTGCAGACCCCACGAGAATGGAAGATTGGAGATGAAGTGG
GTTTGAGCTGCAATGCCCCCCTATCTACCACGCAGCACTAGATGCAACAA
CATTTAAATAGAATCTGATTTTCATATTTGACGCATACTTTTCAGGCTAC
TCGTAGCCCACAGTACCAAGCTTCCTCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1038:214085..214713+

>mRNA_H-akashiwo_Contig1038.4.1 ID=mRNA_H-akashiwo_Contig1038.4.1|Name=mRNA_H-akashiwo_Contig1038.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=129bp|location=Sequence derived from alignment at H-akashiwo_Contig1038:214085..214713+ (Heterosigma akashiwo CCMP452)
ATGGCCGGCAAACCGGCGCCGGGAACCACCAGCAGGCTAATGCTGGCTAC
CAAGTACCCCAGCAGCAGTTCAGACGCCCAAATAACCATCAGCAGGCTAC
TCGTAGCCCACAGTACCAAGCTTCCTCCG
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