mRNA_H-akashiwo_Contig1028.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1028.4.1
Unique NamemRNA_H-akashiwo_Contig1028.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1028.4.1 vs. uniprot
Match: A0A7S3Y5V7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5V7_HETAK)

HSP 1 Score: 132 bits (332), Expect = 3.060e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   70 PHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW 249
            PHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW
Sbjct:  500 PHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW 559
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BLAST of mRNA_H-akashiwo_Contig1028.4.1 vs. uniprot
Match: A0A7S4DCM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCM9_HETAK)

HSP 1 Score: 120 bits (301), Expect = 4.640e-32
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   70 PHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW 249
            PHDPYLYLVHLVD LEAQPSYDYSFH TLIS+C+IACYPDH+AP+METS+DL++LFRKAW
Sbjct:   78 PHDPYLYLVHLVDCLEAQPSYDYSFHHTLISVCSIACYPDHIAPDMETSQDLYMLFRKAW 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1028.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y5V7_HETAK3.060e-34100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DCM9_HETAK4.640e-3285.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1028contigH-akashiwo_Contig1028:176253..178672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size252
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387055.851199-CDS-H-akashiwo_Contig1028:176252..1763451681387055.851199-CDS-H-akashiwo_Contig1028:176252..176345Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1028 176253..176345 +
1681387055.8605378-CDS-H-akashiwo_Contig1028:178196..1783101681387055.8605378-CDS-H-akashiwo_Contig1028:178196..178310Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1028 178197..178310 +
1681387055.872111-CDS-H-akashiwo_Contig1028:178628..1786701681387055.872111-CDS-H-akashiwo_Contig1028:178628..178670Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1028 178629..178670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1028.4.1prot_H-akashiwo_Contig1028.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1028 176253..178670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1028.4.1

>prot_H-akashiwo_Contig1028.4.1 ID=prot_H-akashiwo_Contig1028.4.1|Name=mRNA_H-akashiwo_Contig1028.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
HGAAPPAPAHGPAAGPPGGDRGRPHDPYLYLVHLVDRLEAQPSYDYSFHR
TLISICTIACYPDHLAPEMETSEDLFLLFRKAW
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mRNA from alignment at H-akashiwo_Contig1028:176253..178672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1028.4.1 ID=mRNA_H-akashiwo_Contig1028.4.1|Name=mRNA_H-akashiwo_Contig1028.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2420bp|location=Sequence derived from alignment at H-akashiwo_Contig1028:176253..178672+ (Heterosigma akashiwo CCMP452)
CACGGGGCTGCTCCCCCCGCACCGGCTCACGGACCTGCTGCTGGACCTCC
CGGAGGAGATCGGGGTCGGCCCCACGACCCCTACCTGTACCTGGTGAGCC
GCCCCCCCCCCCCCCTCCGCCTCCGCCCCTCCTCCCCGTGCTCCGCCCTT
CCCCGGCGCTGTGCCCCGCCCCAACGCCCGCCTGAGCACCTGCGGCCGGC
GGCAGGCCTCCCTCGGCGCTCTGCTGGGTTTTTCTTTGTGTGCTTCCTTT
GTTGCTGTGAAATGGTTATGTACCCTTGTCCAGCATCATTTTAAATGTAG
GTGGTCTTGTCCGATCCCTGGAAGGCCGAGGAGAAAACCAATCCGGTGTG
GGGTGATGGTCACATCCGCCATGCAGTGTGTGGAGGAACTGTGGGTATAA
CCATCGTCCATGACGATGTCCATGGGTAGGTTGGCCTTGCTGGGGGGAAC
TGGGCCAATGTTGCTGCAGCAGTCAGTAGTGCCGCTGCTGTTGATATATA
TTACTCCTCGCCGAAGCGTTGTTGTTGTTATTCTACCAGTTTAGAGGGGG
TGACTTTTCTTTTTAATTTGAAGAACAGAGCAGGCGTATTTTTGAACCCC
TTGCCAGTCCAATGAAGAGTCAGCAAGTTTCCTTTGGATGGGTGCTTAAG
GGTGTACAGACGCTTAGGTATGCAAAATGCCAGCTCTTTAGGGGCCTCCT
GGACAGAGTGCTCAAAATCTGAGCCTTGCCGATCCTCCCTCCGGCCAACG
GGGTTACAGAGGGCTGAAGTTTTGCACAACTGGTCCCCTTTGCACCCCTA
AACATCCACCCAAAGGAAACCTGGTAGCTCCCCAATGGACCAGCAGAAGG
TTGAAAAAAAATGATTTAATTCAAACCTTTTTTCCAAGTTTCAAAACTAC
GCACAGTTTTAAAACTAACCACATTTCAACTTTGAGTGCAACAGATTTTT
TTTCATATGTTTGAGCAACCGTGCAAAATAAATCCAATACACTACTGTTG
TTTCGCACTCGTCGCCCTATGTCTTTGGAGTTGTTTTCTAAGTGGAGTGA
AATTTTTGATGTGTTGTTGATAAGGCACTTCATGGTCGATTTTGTTCCAA
ACTTGAGGAATTCTTACTCTCCAGCTTCTTCTGTAAGTCTCCAGAGAGTT
GCTGTTGTGAACGGGGGCTGGCCTCAGCTGGTGGTGATGTGGTGGCGCCT
TTGCAGCAGCAAGTCGTGCTGATCCCCTAAGAGGTGTTTGGGAGGGGTCC
ATGCACTCCGGTTTCAGCTCATTCACCTGCCCGTGCCCTTCACCATCAAG
CACTTTGACCAATAGACCAACTGCCGCCGCCTCTCTTCTGCGCTCCAGTG
GACACGGCAGGAGGGAGGGCTCTGGGTCATCAAGAAGGGAGATGGCGCTC
TGTTGGACTTTGTCTAGCATCCCAAGATTGGTATTTGCTACCCCCAGTAG
ACTAGCTTGCCATATTCAATTTTAGATCTCACAAAGGCTATGTAGGCCAT
CATGATGCCCTGGTTGTCCAGCAAGTGGGCCACCCTTCTGATAGCCCCAA
GGCTCTTCCTCGCATCTGCTGCTGTTTGTTGGACGTGAAGTGACCAATTG
CCCTTGGGGTCAATGATGAACCCCAAAGCTTTCAGCTGCTCCTTTTCCTC
AACAGTGAAGCCGCCCATGCTCAATGGTCTGTGCTGAGCCTTGGTTTTCT
CGCGCTTGTTTGACTACTCAACAATATTATATACTAGATATCAATAACGA
ATAGTGTATAATGTATCTTTTATGTGCTCTTTTCATTTATAGGTTCATTA
GTTTTATTTTCATATATATCTTTGATGTTCCTCAAAATATGTGCATCTTT
GAGTGCACTTTTCATATATCTTTCATACTTATAGCATTAATGTATCTTTT
ACAACATTGATAAATTCAAATGATGTTCCTCAAAATGAAAAAAGGTTCAT
CTGGTGGATCGTCTGGAGGCTCAACCTTCATATGACTACAGCTTTCATCG
AACACTGATCTCCATATGCACGATTGCCTGCTACCCGGACCATCTGGCTC
CGGAGATGGTGAGTACGATTATCGCTTACATATGACAAGAGGGAGAAAGT
TGGTGTTGGCATTTACAGCTCCCACATGCCTAAATGCAGGTGTAGGGGCA
CTTTTGGGCATTGTATAGCAGCATGAACGTTGGACCAGAAAAGGTTGACA
AGAGTACCAGGATCTGTTGCTGACTGTGTTCACAGTGTCATGATGGAGTG
TGATGCCATTTGAGCATATGCCTCTCGGGCAACTGACACAGGCGGGATGG
AGGGATGATCCCATGTAGGCCCCCAAGCCTTGCACTGATCTTGCCTTCTT
GCTGTATACTTCATATACTCTTTCAGGAGACCTCAGAGGACCTGTTTTTG
CTTTTCCGCAAGGCCTGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1028:176253..178672+

>mRNA_H-akashiwo_Contig1028.4.1 ID=mRNA_H-akashiwo_Contig1028.4.1|Name=mRNA_H-akashiwo_Contig1028.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig1028:176253..178672+ (Heterosigma akashiwo CCMP452)
CACGGGGCTGCTCCCCCCGCACCGGCTCACGGACCTGCTGCTGGACCTCC
CGGAGGAGATCGGGGTCGGCCCCACGACCCCTACCTGTACCTGGTTCATC
TGGTGGATCGTCTGGAGGCTCAACCTTCATATGACTACAGCTTTCATCGA
ACACTGATCTCCATATGCACGATTGCCTGCTACCCGGACCATCTGGCTCC
GGAGATGGAGACCTCAGAGGACCTGTTTTTGCTTTTCCGCAAGGCCTGG
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