mRNA_H-akashiwo_Contig1004.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1004.1.1
Unique NamemRNA_H-akashiwo_Contig1004.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A6V1V4J2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V4J2_HETAK)

HSP 1 Score: 333 bits (854), Expect = 1.870e-112
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYP 468
            IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRK+THTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYP
Sbjct:  207 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKETHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYP 362          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: UPI000CD7D1A2 (uncharacterized protein LOC111867609 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7D1A2)

HSP 1 Score: 139 bits (350), Expect = 3.090e-39
Identity = 68/156 (43.59%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYP 468
            +G S+S  ++ I++  FE+  + S   +HKP+LW+R  DD F++W HG E LQ+ LSH+N     IQFTME E    +AFLD+   R    V T VYRK THT+RYL++ SNHP   K+G+++ L +RA   C   +DL  E+G  +     NGYP
Sbjct:    3 MGSSLSRIVSNIFIENFEKSSLQS--AQHKPSLWLRYIDDTFVVWPHGPEWLQDFLSHLNSLRPSIQFTMEIESESAIAFLDVVALRREATVATKVYRKPTHTYRYLNFNSNHPPLAKMGLIQSLHNRASTACQELQDLVKEIGSPRSDLQLNGYP 156          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A6L2P9Y1_COPFO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2P9Y1_COPFO)

HSP 1 Score: 132 bits (331), Expect = 2.220e-35
Identity = 65/153 (42.48%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISN 459
            +G S+S  ++ IY+ +FE   ++      KP+LW+R  DD FIIW HG + LQ LL +++   K I+F+ME E NG L FL++ + + G+ + ++VYRK THT RYLH+ SNHP   K GV++ L++RA+ LC  E+DL+ E+  ++   +SN
Sbjct:   79 MGSSLSPVVSNIYMEFFETLSLHG--WDMKPSLWLRYVDDTFIIWKHGVKYLQSLLDYLSSLRKSIKFSMEVESNGSLLFLNVFVTKKGDILHSAVYRKPTHTGRYLHFDSNHPVHVKRGVVESLVNRANVLCQNEQDLKAEMYTVRKGLLSN 229          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A2J7Q207_9NEOP (Reverse transcriptase domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7Q207_9NEOP)

HSP 1 Score: 137 bits (346), Expect = 4.560e-35
Identity = 66/156 (42.31%), Postives = 97/156 (62.18%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYP 468
            +G S+S  ++ I++  FEE  I  D  ++KP  W+R  DD F+IW +G E+LQ+ L H+N     I+FTME E N  L FLD+ + + G K+ T VYRK THT RYLH++SNHP   K GV+  LI+RA  +C  ++D   E+  ++   + + YP
Sbjct:  242 MGNSLSPVVSNIFMEHFEE--IAIDTAEYKPAKWLRYVDDTFVIWPYGPEELQKFLQHINNIRPTIKFTMEVEVNNALPFLDVLVMKQGPKLTTKVYRKPTHTGRYLHFKSNHPHHVKRGVVHSLINRAKVICQNKKDFSKEIRNIRHDLMLSEYP 395          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A6J2YRR7_SITOR (uncharacterized protein LOC115889567 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YRR7_SITOR)

HSP 1 Score: 130 bits (327), Expect = 9.140e-34
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGY 465
            +G  IS  IA  ++  FEE+ + S   K  P +W R  DD F++W HG + L + L H+N Q   I+FTME E N  LAFLD+ ++R G+ +  +VYRK THT RYLH  SNH    K G++  L +RA R+CD E  ++ E   L   F++NGY
Sbjct:    1 MGSPISPIIANFFMERFEEKALESSVLK--PAVWFRYVDDTFVVWKHGRDSLDDFLHHLNSQSPSIKFTMETEVNNQLAFLDVLVKRNGDLLDHTVYRKPTHTDRYLHKLSNHHPSQKQGIIGTLANRARRICDNEH-IQEEPSLLNKAFLANGY 152          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A6J2X6M1_SITOR (uncharacterized protein LOC115875367 n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X6M1_SITOR)

HSP 1 Score: 129 bits (325), Expect = 2.800e-33
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGY 465
            +G  IS  IA  ++  FEE+ + S   K  P +W R  DD F++W HG + L + L H+N Q   I+FTME E+N  LAFLD+ ++R G+ +  +VYRK THT RYLH  SNH    K G++  L +RA R+C ++  ++ EL  L   F++NGY
Sbjct:    1 MGSPISPIIANFFMERFEEKALESSVLK--PAVWFRYVDDTFVVWKHGRDSLDDFLHHLNTQSPSIKFTMETEENNQLAFLDVLVKRNGDHLDHTVYRKPTHTDRYLHKLSNHHPSQKHGIIGTLANRARRICAKDH-IQEELSHLNKAFLANGY 152          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A7S3XWS7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWS7_HETAK)

HSP 1 Score: 122 bits (306), Expect = 4.740e-33
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 213
            IGKSISGPIAGIYLNWF+E+FIYS+RCK+KPTLW RMR     IWDHGEEKLQELL HVN QE+R+QFT+E
Sbjct:   53 IGKSISGPIAGIYLNWFDEEFIYSERCKNKPTLWKRMRG----IWDHGEEKLQELLGHVNEQEERVQFTIE 119          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 131 bits (330), Expect = 6.570e-33
Identity = 70/156 (44.87%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVT-SVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGY 465
            +G  +S   A +YL+ FEE+ I S   K  PT W R  DD F+IW HG +KL+E L H+N     I+FTME E+NG + FLD+ ++R  E  ++ +VYRK THT RYLH  S+H  K K G++  L HR+  + D++  LR EL  L+    SNGY
Sbjct:  277 MGSPVSPAAANLYLSSFEEEAINSSTLK--PTHWYRYIDDTFVIWPHGRQKLEEFLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKTTHTDRYLHAESHHHPKQKRGILHTLAHRSKTISDKQH-LREELQHLQQALASNGY 429          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: A0A6J2YSK0_SITOR (uncharacterized protein LOC115889824 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YSK0_SITOR)

HSP 1 Score: 127 bits (320), Expect = 6.730e-33
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGY 465
            +G  IS  IA  ++  FEE+ + S   K  P +W R  DD F++W HG + L + L H+N Q   I+FTME E N  LAFLD+ ++R G+ +  +VYRK THT RYLH  SNH    K G++  L +RA  +C  E  ++ EL  L   F++NGY
Sbjct:   58 MGSPISPIIANFFMERFEEKALESSVLK--PAVWFRYVDDTFVVWKHGRDSLDDFLHHLNSQSPSIKFTMETEVNNQLAFLDVLVKRNGDLLDHTVYRKPTHTDRYLHKLSNHHPSQKQGIIGTLANRARHICANEH-IQEELSHLNKAFLANGY 209          
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Match: UPI000CD7B128 (uncharacterized protein LOC111868932 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7B128)

HSP 1 Score: 127 bits (320), Expect = 1.330e-32
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = 1
Query:    1 IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKDTHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYP 468
            +G S+S  +  +Y+  FE+  +  D    KP+ W R  DD F+IW HG   LQ  L H+N     IQFTME E N  + FLD+ + +      T VYRK THT RYL++ SNHP   K G+++ L  RA  +C  + D   E+  L+ +F++NGYP
Sbjct:   14 MGNSLSPIVCDLYMVHFEKLAL--DSALFKPSCWFRYVDDTFVIWPHGPNTLQNFLIHLNSIRPTIQFTMETEVNNTIPFLDVLVTKTDATFSTKVYRKPTHTGRYLNFESNHPPHIKKGLIRGLQKRAITICQDQNDQHKEISHLRREFLTNGYP 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1004.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1V4J2_HETAK1.870e-11299.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000CD7D1A23.090e-3943.59uncharacterized protein LOC111867609 n=1 Tax=Crypt... [more]
A0A6L2P9Y1_COPFO2.220e-3542.48Reverse transcriptase domain-containing protein (F... [more]
A0A2J7Q207_9NEOP4.560e-3542.31Reverse transcriptase domain-containing protein n=... [more]
A0A6J2YRR7_SITOR9.140e-3443.23uncharacterized protein LOC115889567 n=1 Tax=Sitop... [more]
A0A6J2X6M1_SITOR2.800e-3342.58uncharacterized protein LOC115875367 n=2 Tax=Sitop... [more]
A0A7S3XWS7_HETAK4.740e-3378.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A401QI04_SCYTO6.570e-3344.87Reverse transcriptase domain-containing protein (F... [more]
A0A6J2YSK0_SITOR6.730e-3342.58uncharacterized protein LOC115889824 n=1 Tax=Sitop... [more]
UPI000CD7B1281.330e-3240.38uncharacterized protein LOC111868932 n=1 Tax=Crypt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1004contigH-akashiwo_Contig1004:19084..19560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size477
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.99e-32
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.8217983-CDS-H-akashiwo_Contig1004:19083..195601681387047.8217983-CDS-H-akashiwo_Contig1004:19083..19560Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 19084..19560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1004.1.1prot_H-akashiwo_Contig1004.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1004 19084..19560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1004.1.1

>prot_H-akashiwo_Contig1004.1.1 ID=prot_H-akashiwo_Contig1004.1.1|Name=mRNA_H-akashiwo_Contig1004.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=159bp
IGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEE
KLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKD
THTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQF
ISNGYPCA*
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mRNA from alignment at H-akashiwo_Contig1004:19084..19560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1004.1.1 ID=mRNA_H-akashiwo_Contig1004.1.1|Name=mRNA_H-akashiwo_Contig1004.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:19084..19560+ (Heterosigma akashiwo CCMP452)
ATCGGCAAGTCCATCTCCGGTCCCATTGCAGGTATATATTTGAACTGGTT CGAAGAACAGTTCATCTATAGTGACAGGTGCAAGCACAAGCCCACCCTGT GGGTGAGGATGAGGGATGATGTGTTCATCATTTGGGACCATGGGGAGGAG AAGCTACAGGAGCTGTTGAGCCATGTGAATGGCCAGGAGAAGCGGATCCA ATTCACGATGGAGAGAGAGAAGAATGGGGTGCTTGCTTTTCTGGACCTGA AGATGGAGAGGGTGGGGGAGAAGGTGGTGACCAGCGTGTATCGGAAGGAC ACGCACACCTTTCGGTACCTGCATTGGAGGTCAAATCATCCCAAGAAGAC CAAGCTGGGGGTGATGAAGTGCCTCATCCATCGAGCCCATCGGCTGTGCG ACCGGGAGGAGGATCTGAGGTGGGAGCTGGGTTTTCTCAAGGACCAGTTC ATCTCAAATGGATACCCCTGTGCGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1004:19084..19560+

>mRNA_H-akashiwo_Contig1004.1.1 ID=mRNA_H-akashiwo_Contig1004.1.1|Name=mRNA_H-akashiwo_Contig1004.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:19084..19560+ (Heterosigma akashiwo CCMP452)
ATCGGCAAGTCCATCTCCGGTCCCATTGCAGGTATATATTTGAACTGGTT
CGAAGAACAGTTCATCTATAGTGACAGGTGCAAGCACAAGCCCACCCTGT
GGGTGAGGATGAGGGATGATGTGTTCATCATTTGGGACCATGGGGAGGAG
AAGCTACAGGAGCTGTTGAGCCATGTGAATGGCCAGGAGAAGCGGATCCA
ATTCACGATGGAGAGAGAGAAGAATGGGGTGCTTGCTTTTCTGGACCTGA
AGATGGAGAGGGTGGGGGAGAAGGTGGTGACCAGCGTGTATCGGAAGGAC
ACGCACACCTTTCGGTACCTGCATTGGAGGTCAAATCATCCCAAGAAGAC
CAAGCTGGGGGTGATGAAGTGCCTCATCCATCGAGCCCATCGGCTGTGCG
ACCGGGAGGAGGATCTGAGGTGGGAGCTGGGTTTTCTCAAGGACCAGTTC
ATCTCAAATGGATACCCCTGTGCGTGA
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