mRNA_H-akashiwo_Contig100.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig100.21.1
Unique Name	mRNA_H-akashiwo_Contig100.21.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

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BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot
Match: A0A482RQK8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQK8_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 7.150e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1

Query:   31 APKIYLIGNKIDLIGLRKVSETDHAEWIENHPVAGGFFMSA 153
            AP IYL+GNK+DL  LRKVS  DHA +I  + + GGFF+SA
Sbjct:  142 APHIYLVGNKVDLPHLRKVSADDHAAFIAVNKLQGGFFVSA 182

[Close]

BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot
Match: A0A7S0XCY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCY9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.000e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1

Query:   25 SPAPKIYLIGNKIDLIGLRKVSETDHAEWIENHPVAGGFFMSA 153
            S    IYL+GNKIDLI LR+VSE +H  +IE + + GG F+SA
Sbjct:   19 STCKTIYLVGNKIDLIHLRQVSEYNHKLFIETNNLRGGMFVSA 61

[Close]

BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot
Match: A0A485LH36_9STRA (Aste57867_21294 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH36_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.220e-6
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1

Query:   40 IYLIGNKIDLIGLRKVSETDHAEWIENHPVAGGFFMSA 153
            +Y +GNKIDL+GLR VSE  H  ++  H +AGGF +SA
Sbjct:  124 LYAVGNKIDLVGLRAVSEDAHHAFVATHKLAGGFLLSA 161

[Close]

BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot
Match: W4G3S5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3S5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.370e-6
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1

Query:   40 IYLIGNKIDLIGLRKVSETDHAEWIENHPVAGGFFMSA 153
            +YL+GNKIDL+GLR V    H E+++ H +AG F +SA
Sbjct:  139 VYLVGNKIDLVGLRAVGVAQHDEFVKTHHLAGAFLLSA 176

[Close]

BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot
Match: A0A1V9YKI4_9STRA (Rab28 family GTPase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKI4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.640e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1

Query:   10 AEEANSPAPK---IYLIGNKIDLIGLRKVSETDHAEWIENHPVAGGFFMSA 153
            A + +S  PK   +Y +GNKIDL+ LR VSE  H  ++  H +AGGF +SA
Sbjct:  111 AIDVSSRKPKKRFVYAVGNKIDLVHLRAVSEAQHQAFVVAHQLAGGFLLSA 161

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig100.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A482RQK8_9ARCH	7.150e-7	60.98	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
A0A7S0XCY9_9STRA	6.000e-6	55.81	Hypothetical protein (Fragment) n=1 Tax=Chromulina...	[more]
A0A485LH36_9STRA	6.220e-6	55.26	Aste57867_21294 protein n=1 Tax=Aphanomyces stella...	[more]
W4G3S5_9STRA	9.370e-6	52.63	Uncharacterized protein n=3 Tax=Aphanomyces astaci...	[more]
A0A1V9YKI4_9STRA	1.640e-5	47.06	Rab28 family GTPase n=1 Tax=Achlya hypogyna TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig100	contig	H-akashiwo_Contig100:750096..754497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	157072.XP_008876771.1
Preferred name	RAB40C
PFAMs	Ras,SOCS_box
Model size	153
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07901,ko:K07915,ko:K07928,ko:K07976,ko:K17199
KEGG Pathway	ko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000003,GO:0000131,GO:0000166,GO:0000910,GO:0001411,GO:0001882,GO:0001883,GO:0002790,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007049,GO:0007107,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009306,GO:0009653,GO:0009987,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017157,GO:0019001,GO:0019867,GO:0019953,GO:0022402,GO:0022406,GO:0022413,GO:0022414,GO:0022607,GO:0030133,GO:0030154,GO:0030427,GO:0030435,GO:0030437,GO:0031090,GO:0031321,GO:0031410,GO:0031521,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032502,GO:0032505,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034293,GO:0034613,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0045184,GO:0046903,GO:0048193,GO:0048278,GO:0048284,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051286,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0070887,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:1901265,GO:1901363,GO:1903046,GO:1903530,GO:1990778
Exons	3
Evalue	2.72e-05
EggNOG OGs	KOG0078@1\|root,KOG0078@2759\|Eukaryota
Description	GTPase activity
Cds size	153
COG category	S
BRITE	ko00000,ko00001,ko03036,ko04031,ko04121,ko04131,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387046.0644865-CDS-H-akashiwo_Contig100:750095..750155	1681387046.0644865-CDS-H-akashiwo_Contig100:750095..750155	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig100 750096..750155 +
1681387046.0771298-CDS-H-akashiwo_Contig100:750361..750409	1681387046.0771298-CDS-H-akashiwo_Contig100:750361..750409	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig100 750362..750409 +
1681387046.0910199-CDS-H-akashiwo_Contig100:754452..754497	1681387046.0910199-CDS-H-akashiwo_Contig100:754452..754497	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig100 754453..754497 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig100.21.1	prot_H-akashiwo_Contig100.21.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig100 750096..754497 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig100:750096..754497+
coding sequence from alignment at H-akashiwo_Contig100:750096..754497+

protein sequence of mRNA_H-akashiwo_Contig100.21.1

>prot_H-akashiwo_Contig100.21.1 ID=prot_H-akashiwo_Contig100.21.1|Name=mRNA_H-akashiwo_Contig100.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
FAKAEEANSPAPKIYLIGNKIDLIGLRKVSETDHAEWIENHPVAGGFFMS
A

mRNA from alignment at H-akashiwo_Contig100:750096..754497+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig100.21.1 ID=mRNA_H-akashiwo_Contig100.21.1|Name=mRNA_H-akashiwo_Contig100.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4402bp|location=Sequence derived from alignment at H-akashiwo_Contig100:750096..754497+ (Heterosigma akashiwo CCMP452)
TTTGCCAAGGCAGAAGAGGCAAATTCACCTGCCCCTAAGATCTATCTGAT
CGGTAATAAGGCAAGTAATGGGCTTCAGTGAGCCTTTGATATACTACCTG
TAAATCAGGTTTTGTTTTACGAATGAAAGCTATACAGTAAAGCACACAGC
TCACAAACGTATGTACAAACTCAGAGCATCTGACTGGCTTGGTGATCATT
CCATCTAATGTTTCCTGAAAACTGTTTCTCTCTTTTTTGCCTATTCACCC
CACAACACACTTCAAGATTGACTTGATTGGCCTTCGTAAAGTTTCAGAAA
CTGACCATGCAGAGGTTTGATTGGCTATTAAAATAATAGCTATACATACA
GTCAAGAATTTTACTCCTTTACATGTGTTACAACCAGCATCTTTTCTTCA
TATTATATTCATTTTTTACCTTGCTATGTAGTTACTGTGTCCAGCCCACT
TAGGTATTAGTAAAGGTTGCCAATCAATGCAATGGCCTGGTTTAGTACAA
GGGTGTTAGTAATGCTTTCCATGTACAGTGTATACTGTGGAAGGACCTAT
CAGTAGAGATTCTTCAGTTGCAACTCAAATCAAGTATCACTAATCGAAAA
AAAAAAATAGAAAAAAATTGATGATGATGCAATGTGTTCTAGAAGCAAAA
ACACGGTTTCGAGCAGTTGCCAGGAGTTTCGAGCTGTTCTAGAGTGGTCC
GGATCTGGTGGGTGGCCTCTGGTTTTTGGTTGTGGGTTGGTTGTGGCTCC
AAAAAGCGGTGGGTGATTTTTCCTGCAGCCTGCAGAGAATGGCATTGCAT
AGAATGGCTAGAGGCAAGCTCCTTGCTCTCTGCAAACACCGAAATGGCAG
GTGGAGGCAAGCTCCCTGCGTATCTTGAGCAGATTGAGGCGAGCTCTCCA
CAAACACCAAATATCGAAGCAGGCAGACCTGTATAGTTGAAGGCCACTGA
AATACCAGCACCGCATTTATTACCAGCCCACTGAGCCAGCAACTGATCCA
TTGTTTCTTCGAAAATCTTTGGATTTTTATTGCTGTTGTGGGCAGCAAAA
ATCATTCTTAACTAAACCCCTGTTGCACCCACTATATCTATAGCACATAT
TTCAGCTCTAAACTGTTGCATCACTGATGACTTTCAGAGCTAGATATAAA
GAACGGCCCTTGTTTCCACTGGTCATCAATGAAATCAATTCAAAACATAA
TTAGATAAAAAAGTTATAGCCTGTGTGGCATGTACTGCCAGCTACCAAAG
CGGCACAGCAGCTTTTTCTTAAATTCTGTTGATGCTCGTACGCAGCGTAT
TGTTGTTGTAATAATGATTTAAAACCCTACAAGTTCTTGCTACCCACTAA
ATTAAATTATAATGCCATAGTCCAGCACCCAACTGATGCTTTGATAGGTG
TCATTTTGTCCGCAGAACGGCACATCCATCTGTGCTTTGGCAAGTCAAAG
ATCCATTCTCTTGGTGAAATAATTTCTTCTGGTCTTCAGAAGTGTATCGT
CACAGAAGTAAAAAGGGGCTAAAAAAAAAAAAAAAAAAAAAGACCTTCTG
CTGCTGATAAAGTTCATTGTTTCATCGCAGATCAGCCGTGTTACCGGTGG
CCGTAATTGTGGTAGGGGTATAGCAGTGCGGTAGGGACAGCAGCTTCGTG
TTTATATATATATATATATATATATATATATATATTATATATATACGTTC
TACTTGCAATGCGCCCCTTCACATCCTTAGCCACACAACCACTGTCGATT
TGCAGGCTGCCTTGAGATCTGAGCACTTCTTCGGATCAAGTGTTGCTGCT
GACTAACCGAAGTTCCAGCTGCCCTTAACCCTACATGCTCTATTGCCCTT
GGGTGCAGTTATGCCATGGTGTTTGCAGATGTAATCAACTGTAGCAGGGG
CAGAGAGAGTAAGTATGGTGGAAGCAGTAGGAGGGCCAGCACTAATGGCG
GGCAGCCCACTGCACAATCAGGTTTGGAGGCCGTAAAACCAGTGCTGCCT
GCTAGAAATGATGACGACAGGAGCAGCAGAGCTCGAGCTGTGCTGATAAA
AGAGCCGGCAGGGCCAGCAGAAGAAGAAAGAAGCTACTGGCCTTGTTGTG
CCCTTTTAGTTTTTCTGTAGTCCCCACAGTCATCCCCCTTGGTACTGTTC
CCGCTCCCCCATATATATTTTCCCCTGCAGCTGTTGGGAGGTATATATAT
GTGGGAAAGGTTCAAGATTTGTCACTTTACATATTTGGCTTCTTTTTTAC
GGGGGGGATATATACAAAAGATCTTGTCAGTCTTGGTCAGTCCTGAACTA
TATGGGGAGATCTAGACTATAACCATTCCATGGCTTCTTACTTCAGCTTT
ATTAATGGATGTTGGTATAAATATTGATAGTACAGTGACTCTGCTGCTTC
TGAATATAACAACAAGAAGTATAAGAACAACAGTAGTATTTCTTCATGCT
GCTGATGACCATGCTCCTTCTTCTTGTGCTGATCGCCTCTTCTTCATGCT
GACTCATGACAGACACACTCCATGCTCGTGCCTACAACCAATCAGAAGAG
AGCTTCAACTTCTTCTTCTCTGAGTGTAGAATTAGAAGACAAGCCTGTGT
TGCCAACCAAGATGGTTGTCAACTGGGCTTGAACCCGGGGCCTGTGACTG
GTATAAGCCAAGGGCCTATAGCCGACTGGGCTGTGGTTGCTGTGTGAACG
CACAATGCCGGATCTAAAGCTCCACCATAGCGGACAGGTGAGCACAGCAG
CAGTAGTAGGAGAAAAGAAATCCCCACCACTGGGCAAAGTTGAAGCTGTG
TGAAGAAAAACTCCACCAGAAATTGAACTTCGCCAGAAGTTGAACTCCAC
CAAAAGTAGAACTCCACCAAAGTTGAAAGAAGCTGAATGTTGTCATATCA
CCATCAAAGATCCTGCTTGAGTAGAAACCCTACCAAAGACAAGTAGTATA
GCTTGATGACAGCAGATGAGGAGAGCCCCACTAAACGCCAAAGAGGTTGA
AAAGCGAAGAGCCACTTGAGAGCAAGTGGTAGCCATAGATGCCCTTCTGC
AAGTGGTAGCCATAGATGCCCTTCTGCAAAGAGAGAATCATGCAGCTGCC
TTTGAGGAGGTCAGGAGTAAAAATAAATAAGAGCCAGACACAAAAAAAAA
AAAATCCATTCGAAATTACCTTTGACTTTAGAAGCAGGTACCACTTCATC
TATAACTACACCACCCAAGACAGAGTCGAAGGTCAAGGTGTTCACATGCC
GATTTGAATTCAAGCACAGAAGGAAAAAAGAAACGCCACAATCATCGTTG
ATGTTAGCAGCACCACACATGATTCGAAACAAGGAAAATCGATATTTTCC
GAGCCCTGGCAGTAAAGGGTAACGACTTCTTCACCGATGGATCCAGTGCC
GAGTGAACAGTGTAGCAAGGAAAGTACAAGCACATCACAAGATATCAGCT
GCAGCATGTGCTAATCCAAAGAAATCCCGAAGAAAGAGAATCACTGTCCC
CAAATCACCAAGTGGAGGTGGAAATCCAGGTTGAGCTTATCTCCGATAGC
ACAGGAGATACGGCATGATGTCCATCTCGTACCCAGTGCAGCGTCCAGCG
ACTCTAGGGCGAGTCCCAATCGTCAATGGACGTGGTTTGACTCTAGAAGC
GCAGGATCGCAGCCCAAATTGAGAAGTGCGCACGAGCAGCAGGCTCACTT
TCGCAAACTGACAAGACCTCGCTTCGCGAGCACAGAGGCGTAGCGACACG
GGACCCATATCCAAAACATCTTGTCAGTCTTGGTCAGTCCTGAACTATAT
GGGGAGATCTAGACTAGCCATTCGCTTCTTATTTCAGCTTTATTAATGGA
TGTTGGTATAAATATTGATAGTACAGCGACTCTGCTGCTTCCGAATAACA
ACAAGAAGTATAAGAACAATAGTAGTGTTTCTTCATGCTACTGATGACCA
TGCTCCTTCTTCTTGTGATGATCGCCTCTTCTTCATGCTGACTCATGTCA
GACACACTTCATGCCCGTGCCTACAACCATTCAGAAGATAGCTTCAACTT
CTTCTTCTCTGAGTGTAGAAGAAGTAGGAGACAAACCTGTGTTGACAACC
AAGATGGTTGTCAACTGGGCTCGAACCCGGGGCCTGTGACTGGTATAAGC
CAAGGGCCTATAGCCGACTGGGCTGTGGTTGCTGTGTGAACGGGCAATGC
CAGATCTAAAGATATGTATGCAGTCAGGGCACATAGGTGAAATCCATTTT
GGTGGTCTAAGTGTTGAATTGACAAACATCACAGATTTGACAAATCATAT
ATATATATATATATATATATATATATTGTGTGTGTGTTTGTGTGTTGTTT
CATGCAGTGGATAGAAAATCACCCAGTTGCTGGTGGATTTTTCATGTCTG
CC

Coding sequence (CDS) from alignment at H-akashiwo_Contig100:750096..754497+

>mRNA_H-akashiwo_Contig100.21.1 ID=mRNA_H-akashiwo_Contig100.21.1|Name=mRNA_H-akashiwo_Contig100.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig100:750096..754497+ (Heterosigma akashiwo CCMP452)
TTTGCCAAGGCAGAAGAGGCAAATTCACCTGCCCCTAAGATCTATCTGAT
CGGTAATAAGATTGACTTGATTGGCCTTCGTAAAGTTTCAGAAACTGACC
ATGCAGAGTGGATAGAAAATCACCCAGTTGCTGGTGGATTTTTCATGTCT
GCC