mRNA_H-akashiwo_Contig100.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.18.1
Unique NamemRNA_H-akashiwo_Contig100.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 474 bits (1221), Expect = 5.670e-164
Identity = 227/303 (74.92%), Postives = 262/303 (86.47%), Query Frame = 2
Query:  410 SVVSNLKTSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFDRHQHVLHNG 1318
            +VVS  K S  S++S+TD G LT ILGIKV RD  NKCF+LSQ SFI+DA++KFGLD+LPAC+TP+    DLTPTPGFKA L DAN YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYLKGTQSE LRLGGDLVLRA++D+DFC DR+DGKSVTGY++ LGD+PIVW+SKLQ AVTTSTVEAEYLALR+ +KDIMWLR LL ++ CPQ EPTPV+EDNSAC+EWA DM+V+++ RHFHVSYHLA+EQV LGTI+M Y K+ DQ+ADI TKALNA  F+RHQ VLH+G
Sbjct:   48 AVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFERHQRVLHHG 350          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 324 bits (830), Expect = 5.200e-104
Identity = 177/229 (77.29%), Postives = 187/229 (81.66%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDG-AFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRSD-SSPAFT------------------LAKILNIPSVVSNLKTSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDAN 667
            L+  GFT REGVDFS TYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDG  +VKQPPGFVDKDHPHK WKLKKAL     SP+ +  +LHEFLLQQNFVRSD  S  +T                  L    NIPSVVS+LK+SFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASF+RDAISKFGLD+LPACRTPMT ATDLTPTPGFKASLPDAN
Sbjct:  181 LVAQGFTQREGVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 296 bits (758), Expect = 3.670e-95
Identity = 157/266 (59.02%), Postives = 189/266 (71.05%), Query Frame = 2
Query:   74 GVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDI-DGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRS----------DSSPAFTLAKILN-------IPSVVSNLKTSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYL 814
            G+DF  TYSPV+ A SLRL+L+I+ANKG+AV++LDISTAFLN  + D  +V+QPP +VD  HP+K WKL KAL     SP+ + M LH+ L    F RS          D      +A  ++         ++VS  K S  S++++TD G LT ILGIKV RD  NKCF+LSQ SFI+DA++KFGLD+LPAC+TP+    DLTPTPGFKA L DAN YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYL
Sbjct:    3 GIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 293 bits (749), Expect = 3.940e-86
Identity = 171/446 (38.34%), Postives = 258/446 (57.85%), Query Frame = 2
Query:   56 GFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDID-GAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRS----------DSSPAFTLAKILNIPSVVSNLKTSFVSR--------FSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATD--LTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEV-FDRHQHVLHNGLS 1324
            G++  EGVD++ T+SPV+++ SLR +L+IAA++   +  +DI TAFL+  ++   ++KQP G+      HK  KLKK+L     +P+ +  +L+ FLLQQ + R+           S+   TL  +     V+++   S +SR        ++++D+G + SILGIKV RD T +   LSQ SFI +A  KF +        P+    D  +      + S  +A ++RS+VGT+ W+A WT PE+A+++H L +   +P      A+    RYL  T+ + + LGG L L AY DADFC +R  G+S +G+ I LG SPI+W+S++Q  VT +T EAEY++LR  + D+MWL+ LL  L   Q    P+ EDN ACI WA D  VS+  RH HVSYH  +E V+   I++ Y  +  Q+AD+FTK L+    F +   VLH  LS
Sbjct:  555 GYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNNGFKKFSRVLHGKLS 999          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A5BCL1_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5BCL1_VITVI)

HSP 1 Score: 242 bits (617), Expect = 2.510e-71
Identity = 152/437 (34.78%), Postives = 243/437 (55.61%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDI-DGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRSDSSPA-----------FTLAKILNIPSVVSNLKTS--FVS----RFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSE--RLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFD 1291
            L+  GF  R G+D+S T+SPVI   ++RL+LS+A ++G ++  LD++ AFL   + +  F+ QPPGF+D+DHPH   KL+KA+     +P+ +   L +FLLQ  F+ S +  +           + L  + +I    +N++ +  F+     RFS+ DLGPLT  LG++V+  HTN  F LSQ  +I D +++  +       TP+ T+  LT   G    L D   YR++VG+L +++  TRP++A+TV+KL ++ + P   H+ A +R  RYL GT      LR    L L A++D+D+  ++ D  S + Y+I LG +PI W+SK Q  V  S+ EAEY ++ +   +I W+  LL +L     +   +  DN        + V   + +H  + YH   EQV+ G +++ +  +SDQLAD  TK L    FD
Sbjct:   22 LVAKGFHQRPGIDYSETFSPVIKPTTVRLVLSLAVSQGWSLRQLDVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELCQFLLQFGFINSIADTSLFIFNNHDTILYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVEVT-SHTNGLF-LSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSG--TPLSDPTEYRTVVGSLQYLS-LTRPDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHDITLRRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISASDQLADALTKPLARPQFD 453          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A2N9GZS2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GZS2_FAGSY)

HSP 1 Score: 249 bits (636), Expect = 7.210e-70
Identity = 152/437 (34.78%), Postives = 238/437 (54.46%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDI-DGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRSDSSPA---FTLAKIL--------------NIPSVVSNLKTSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSERLRLG-GDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFDR 1294
            L+  GF  + G+DF  T+SPV+  P++R++LS+AA     +  LDIS AFL+  + +  F+ QPPGF   D+P+   KL K+L     +P+ +       LL   F  S + P+   F    IL              N  + +++L T   + F + DLGPL   LG+++  ++ + C ++ Q  +I D +SKF +    A  TP + +  L P+   KA L D   YRS+VG L + A +TRP++ + V+++ +Y + P   HF  A+R  +YL+GT S  +R   G  VL A+TD+D+  D  D +S TG  + LG++PI W SK Q  V+ S+ EAEY AL  G+ ++ WLR +L DL         +  DN++ I  A + +   +T+H  V YH   E+V  G + + +  + DQLAD+FTK L+ + F R
Sbjct:  639 LVAKGFHQQPGLDFDETFSPVVKPPTVRIVLSLAAQHQWPLRQLDISNAFLHGFLKEDVFMLQPPGFAHSDYPNHVCKLHKSLYILKQAPRAWFERFTSHLLTIGFTASTADPSLFVFRQGSILLHLLLYVDDIILTGNSIAAITSLITQLAATFELKDLGPLRYFLGLQI--EYGSDCLFVHQRKYITDLLSKFNMPTCKAASTPFSISHKLQPST--KALLSDPTPYRSLVGALQY-ATFTRPDITYAVNQVCQYMHKPTATHFAVAKRILQYLQGTLSLGIRFKTGSPVLIAFTDSDWAGDPYDRRSTTGITVFLGNNPITWISKKQHTVSRSSTEAEYKALAFGVAELAWLRQVLCDLGVVLPNAPTMWCDNTSAIALASNPIFHSRTKHIEVDYHFVRERVVRGDLHLQFISTDDQLADLFTKPLSTQRFQR 1070          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: W1QI12_OGAPD (Polyprotein (Gag/pol) of Ty1/Copia retrotransposon n=4 Tax=Ogataea TaxID=461281 RepID=W1QI12_OGAPD)

HSP 1 Score: 237 bits (604), Expect = 1.160e-69
Identity = 146/444 (32.88%), Postives = 238/444 (53.60%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSD-IDGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVR---------SDSSPAFTLAKILNIPSVVS-------NLKTSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFL-PACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSERLRLG--GDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFDRHQHVLH 1312
            L+  GF+   G+D++ T+SPVI   SLRL+L++AA+   +V  +D++TAFLN + ++  +++QPPGF+  DHP +  +L K+L     +P  +  ++ + L+Q NF R         S SSP   +A  ++   ++S       ++++   S+F + DLGP+T+ LG+ + +  T +   LS +S++   +  FGLD   P  R   TTA            L D   +RSMV  L + AN  RP++ FTV KL RY   P   H   A+   RYLKGT  + +       + L+ + DAD+     D  S TGY+ ML + PI W SK Q ++ TST EAEY+A+   +K+++WL+ L+ +LS        +  DN++ I  A+     ++T+H  + YH   + +  G +Q+ Y  S   +AD+ TK L  E  +  +  +H
Sbjct:   14 LVAQGFSQIHGIDYNETFSPVIRYDSLRLLLALAASHSLSVYQMDVTTAFLNGNLVEELYMRQPPGFISTDHPQRVCRLHKSLYGLKQAPLCWNHTIDQVLVQANFTRIKSDYGIYVSHSSPPTYVALYVDDLLILSKSLTQIKSVQSLLSSKFQMKDLGPVTTFLGLNIRQ--TPQSITLSLSSYLTSILQDFGLDTCNPVTRVSTTTAW----ISDHDVPLTDPTLFRSMVEKLLFAANTARPDITFTVAKLSRYLKQPSQNHLTIAKHVLRYLKGTIDDGITYTRTSSVELKGFCDADWGGILEDRTSTTGYIFMLANGPISWKSKKQNSIATSTTEAEYMAMSDAVKELLWLKQLMKELSVLGSYVPILFGDNTSSISLAKHPTQHQRTKHIDIRYHFIRDHILKGDLQIEYVDSQSNIADLLTKQLVREKLNSLKKKMH 451          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A438BWW2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BWW2_VITVI)

HSP 1 Score: 243 bits (620), Expect = 7.170e-69
Identity = 152/437 (34.78%), Postives = 243/437 (55.61%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDI-DGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRSDSSPA-----------FTLAKILNIPSVVSNLKTS--FVS----RFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSE--RLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFD 1291
            L+  GF  R G+D+S T+SPVI   ++RL+LS+A ++G ++  LD++ AFL   + +  F+ QPPGF+D+DHPH   KL+KA+     +P+ +   L +FLLQ  F+ S +  +           + L  + +I    +N++ +  F+     RFS+ DLGPLT  LG++V+  HTN  F LSQ  +I D +++  +       TP+ T+  LT   G    L D   YR++VG+L +++  TRP++A+TV+KL ++ + P   H+ A +R  RYL GT      LR    L L A++D+D+  ++ D  S + Y+I LG +PI W+SK Q  V  S+ EAEY ++ +   +I W+  LL +L     +   +  DN        + V   + +H  + YH   EQV+ G +++ +  +SDQLAD  TK L    FD
Sbjct:  354 LVAKGFHQRPGIDYSETFSPVIKPTTVRLVLSLAVSQGWSLRQLDVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELRQFLLQFGFINSIADTSLFIFNNHGTILYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVEVT-SHTNGLF-LSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSG--TPLSDPTEYRTVVGSLQYLS-LTRPDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISASDQLADALTKPLARPQFD 785          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A438GGH7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GGH7_VITVI)

HSP 1 Score: 236 bits (601), Expect = 1.130e-68
Identity = 149/437 (34.10%), Postives = 241/437 (55.15%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDI-DGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRSDSSPA-----------FTLAKILNIPSVVSNLKTS--FVS----RFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSERLRL--GGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFD 1291
            L+  GF    G+D+S T+SPVI   ++RL+LS+A ++G ++  LD++  FL   + +  F+ QPPGF+D+DHPH   KL+KA+     +P+ +   LH+FLLQ  F+ S +  +           + L  + +I    +N++ +  F+     RFS+ DLGPLT  LG++V+  HTN  F LSQ  +I D +++  +        P+ T+  LT   G    L D   YR+MVG+L +++  TRP++A+ V+KL ++ + P   H+ A +R  RYL GT    + L     L L A++D+D+  ++ D  S + Y+I LG +PI W+SK Q  V  S++EAEY ++ +   +I W+  LL +L     +   +  DN        + V   + +H  + YH   EQV+ G +++ +  +SDQLAD  TK L    FD
Sbjct:   49 LVAKGFHQCPGIDYSETFSPVIKPTTVRLVLSLAVSQGWSLRQLDVNNTFLQGTLTEDLFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELHQFLLQFGFINSIADTSLFIFNNHGTILYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVEVT-SHTNGLF-LSQRKYIADLLNRTHMTEAKPAPIPLATSPILTLQSG--TLLSDPTEYRTMVGSLQYLS-LTRPDIAYKVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLCRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQQTVARSSIEAEYRSVASIAAEIRWICSLLNELGVTLPQQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISTSDQLADALTKPLARPQFD 480          
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Match: A0A2N9FIJ5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FIJ5_FAGSY)

HSP 1 Score: 245 bits (625), Expect = 1.920e-68
Identity = 151/437 (34.55%), Postives = 233/437 (53.32%), Query Frame = 2
Query:   44 LLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDI-DGAFVKQPPGFVDKDHPHKAWKLKKALSAYA-SPQDYGMSLHEFLLQQNFVRSDSSPAF-------TLAKIL----------NIPSVVSNLKTSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRYQNNPEPKHFEAAQRAFRYLKGTQSERLRL-GGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHLLVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVELGTIQMHYAKSSDQLADIFTKALNAEVFDR 1294
            L+  GF  + G+DF  T+SPV+  P++R++LS+AA     +  LDIS AFL+  + +  ++ QPPGFVD  HP    KL+K+L     +P+ +       LL   FV S + P+        T+  +L          N  S V++L       F + DLGPL   LG+++  + T    ++ Q  +I D + KF +       TP + +  L P+      LPD  +YRS+VG L + A +TRP++ + V+++ +Y + P   H  AA+R  RYL+GT    +R   G   L A+TD+D+  D  D +S TG  + LG++PI W SK Q  V+ S+ EAEY AL  G  ++ WLR +L DL         +  DN++ I  A + V   +T+H  V YH   E+V  G + +H+  + DQLAD+FTK L  + F++
Sbjct:  608 LVAKGFHQQAGLDFDETFSPVVKPPTVRIVLSLAAQHQWPLRQLDISNAFLHGFLKEDVYMIQPPGFVDPTHPDHVCKLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTGNSSSAVASLIAQLAETFELKDLGPLRFFLGLQIDYNRTG--LFVHQRKYISDLLLKFNMTNCKPASTPFSISQKLQPSTD--DVLPDPTQYRSLVGALQY-ATFTRPDITYAVNQVCQYMHKPNSTHLVAAKRILRYLQGTLHLGIRFQSGSSSLTAFTDSDWAGDPYDRRSTTGITVFLGNNPITWVSKKQHTVSRSSTEAEYRALATGAAELAWLRQVLCDLGVYLPTAPTMWCDNTSAIALASNPVFHSRTKHIEVDYHFVRERVVRGDLHLHFISTEDQLADLFTKPLTTQRFNQ 1039          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.670e-16474.92Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK5.200e-10477.29Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y6S2_HETAK3.670e-9559.02Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK3.940e-8638.34Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A5BCL1_VITVI2.510e-7134.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GZS2_FAGSY7.210e-7034.78Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
W1QI12_OGAPD1.160e-6932.88Polyprotein (Gag/pol) of Ty1/Copia retrotransposon... [more]
A0A438BWW2_VITVI7.170e-6934.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GGH7_VITVI1.130e-6834.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FIJ5_FAGSY1.920e-6834.55Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:614486..615875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1005962.W1QLJ8
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1333
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.59e-71
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes
Descriptionretrotransposon
Cds size1326
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.8678174-UTR-H-akashiwo_Contig100:614485..6144921681387046.8678174-UTR-H-akashiwo_Contig100:614485..614492Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 614486..614492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.8788636-CDS-H-akashiwo_Contig100:614492..6148841681387046.8788636-CDS-H-akashiwo_Contig100:614492..614884Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 614493..614884 +
1681387046.8879418-CDS-H-akashiwo_Contig100:614941..6158751681387046.8879418-CDS-H-akashiwo_Contig100:614941..615875Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 614942..615875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.18.1prot_H-akashiwo_Contig100.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 614493..615875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.18.1

>prot_H-akashiwo_Contig100.18.1 ID=prot_H-akashiwo_Contig100.18.1|Name=mRNA_H-akashiwo_Contig100.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=442bp
MQMAISRNIRLDLLRGGFTWREGVDFSMTYSPVIAAPSLRLMLSIAANKG
HAVEALDISTAFLNSDIDGAFVKQPPGFVDKDHPHKAWKLKKALSAYASP
QDYGMSLHEFLLQQNFVRSDSSPAFTLAKILNIPSVVSNLKTSFVSRFSI
TDLGPLTSILGIKVSRDHTNKCFYLSQASFIRDAISKFGLDFLPACRTPM
TTATDLTPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFTVHKLQRY
QNNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDG
KSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRAGLKDIMWLRHL
LVDLSCPQVEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAEEQVEL
GTIQMHYAKSSDQLADIFTKALNAEVFDRHQHVLHNGLSCA*
back to top

mRNA from alignment at H-akashiwo_Contig100:614486..615875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.18.1 ID=mRNA_H-akashiwo_Contig100.18.1|Name=mRNA_H-akashiwo_Contig100.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-akashiwo_Contig100:614486..615875+ (Heterosigma akashiwo CCMP452)
AAGTTCGATGCAGATGGCAATCTCCAGAAATATAAGGCTAGACTTGTTGC GCGGGGGCTTTACATGGCGTGAGGGTGTCGATTTCTCTATGACCTACAGT CCCGTCATTGCAGCCCCCAGCCTCAGGCTGATGCTCTCTATTGCTGCCAA CAAAGGCCACGCCGTGGAAGCGTTGGATATATCGACAGCGTTCTTGAACA GTGACATAGATGGGGCGTTCGTGAAACAGCCGCCTGGTTTTGTCGACAAG GATCATCCCCACAAGGCCTGGAAGCTTAAAAAGGCACTGTCGGCTTACGC CAGTCCCCAAGATTATGGTATGTCGTTGCATGAGTTTCTTCTTCAGCAAA ACTTCGTTCGCAGTGACTCGAGTCCTGCCTTTACACTTGCAAAAATTCTG TGACTGGGGAAGACACTATGATCGCGGTGTCGCGTGGATGATCTGGTGCT CAGCAGTAACATCCCTTCTGTAGTTAGTAATCTCAAAACCTCCTTTGTTT CGCGTTTCAGCATCACTGATCTTGGTCCTCTTACTTCTATTCTCGGCATC AAGGTTTCTCGGGACCATACCAATAAGTGTTTCTACCTCAGCCAAGCCTC CTTCATCAGGGACGCCATCTCTAAGTTCGGTCTGGACTTTCTGCCTGCTT GTCGCACCCCAATGACCACTGCTACCGATTTGACCCCCACGCCTGGCTTC AAGGCCTCCTTGCCTGATGCCAACAGGTATAGGTCGATGGTTGGCACTCT TGCCTGGGTTGCCAACTGGACTCGGCCTGAGCTTGCTTTTACTGTGCACA AGCTTCAACGGTATCAAAATAACCCTGAGCCCAAGCATTTTGAGGCTGCC CAACGAGCATTCAGGTATCTCAAAGGCACTCAGTCTGAGAGGCTACGGCT TGGGGGGGACCTGGTCCTGCGTGCATATACTGATGCTGACTTCTGTCAGG ACAGGATTGATGGCAAATCTGTCACAGGCTATGTCATTATGCTTGGGGAC TCACCTATTGTGTGGGCCTCAAAGCTTCAGACTGCGGTCACTACATCCAC TGTGGAGGCTGAATATTTGGCACTGAGGGCTGGGCTCAAGGATATCATGT GGCTGAGACATCTTCTTGTGGATCTTTCATGCCCTCAAGTGGAGCCTACA CCAGTCATTGAGGATAACTCTGCCTGTATAGAGTGGGCCAGGGACATGGT TGTCTCAAGAAAGACCAGGCATTTTCATGTTTCTTATCACCTGGCTGAAG AACAAGTGGAGCTTGGGACCATACAGATGCACTATGCCAAGTCAAGTGAT CAGTTGGCAGACATCTTCACTAAGGCTTTGAATGCAGAGGTTTTTGATAG GCACCAGCATGTGCTTCATAATGGCCTCAGTTGTGCATAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig100:614486..615875+

>mRNA_H-akashiwo_Contig100.18.1 ID=mRNA_H-akashiwo_Contig100.18.1|Name=mRNA_H-akashiwo_Contig100.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1326bp|location=Sequence derived from alignment at H-akashiwo_Contig100:614486..615875+ (Heterosigma akashiwo CCMP452)
ATGCAGATGGCAATCTCCAGAAATATAAGGCTAGACTTGTTGCGCGGGGG
CTTTACATGGCGTGAGGGTGTCGATTTCTCTATGACCTACAGTCCCGTCA
TTGCAGCCCCCAGCCTCAGGCTGATGCTCTCTATTGCTGCCAACAAAGGC
CACGCCGTGGAAGCGTTGGATATATCGACAGCGTTCTTGAACAGTGACAT
AGATGGGGCGTTCGTGAAACAGCCGCCTGGTTTTGTCGACAAGGATCATC
CCCACAAGGCCTGGAAGCTTAAAAAGGCACTGTCGGCTTACGCCAGTCCC
CAAGATTATGGTATGTCGTTGCATGAGTTTCTTCTTCAGCAAAACTTCGT
TCGCAGTGACTCGAGTCCTGCCTTTACACTTGCAAAAATTCTTAACATCC
CTTCTGTAGTTAGTAATCTCAAAACCTCCTTTGTTTCGCGTTTCAGCATC
ACTGATCTTGGTCCTCTTACTTCTATTCTCGGCATCAAGGTTTCTCGGGA
CCATACCAATAAGTGTTTCTACCTCAGCCAAGCCTCCTTCATCAGGGACG
CCATCTCTAAGTTCGGTCTGGACTTTCTGCCTGCTTGTCGCACCCCAATG
ACCACTGCTACCGATTTGACCCCCACGCCTGGCTTCAAGGCCTCCTTGCC
TGATGCCAACAGGTATAGGTCGATGGTTGGCACTCTTGCCTGGGTTGCCA
ACTGGACTCGGCCTGAGCTTGCTTTTACTGTGCACAAGCTTCAACGGTAT
CAAAATAACCCTGAGCCCAAGCATTTTGAGGCTGCCCAACGAGCATTCAG
GTATCTCAAAGGCACTCAGTCTGAGAGGCTACGGCTTGGGGGGGACCTGG
TCCTGCGTGCATATACTGATGCTGACTTCTGTCAGGACAGGATTGATGGC
AAATCTGTCACAGGCTATGTCATTATGCTTGGGGACTCACCTATTGTGTG
GGCCTCAAAGCTTCAGACTGCGGTCACTACATCCACTGTGGAGGCTGAAT
ATTTGGCACTGAGGGCTGGGCTCAAGGATATCATGTGGCTGAGACATCTT
CTTGTGGATCTTTCATGCCCTCAAGTGGAGCCTACACCAGTCATTGAGGA
TAACTCTGCCTGTATAGAGTGGGCCAGGGACATGGTTGTCTCAAGAAAGA
CCAGGCATTTTCATGTTTCTTATCACCTGGCTGAAGAACAAGTGGAGCTT
GGGACCATACAGATGCACTATGCCAAGTCAAGTGATCAGTTGGCAGACAT
CTTCACTAAGGCTTTGAATGCAGAGGTTTTTGATAGGCACCAGCATGTGC
TTCATAATGGCCTCAGTTGTGCATAA
back to top