mRNA_H-canaliculatus_M_contigs8862.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8862.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8862.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8862.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.530e-25
Identity = 85/298 (28.52%), Postives = 119/298 (39.93%), Query Frame = 1 
Query:   22 SPLYQINCPTEEVDSANASVLRSALIVGLVIWFTQPCSARFICKQVDRGSAIATLLTSVVSCVTCLGSFVVVMLDINYIARCCSLLGDNCEVSNLCTQFVDDCCISNAV-----------------------------------------------------------------------------------------------------------------EDYCETSSYHIGAVSIIFLAFVSTSCMVIMASTIACRCWLDSDPERQAMLMVLTGSPYASPRGGXXXXXXSPRFSP 576
            S +Y   C + EV  AN S+L SALI G+VIW  QP +A  I KQV +  A  TLL+S V  VTC  +F+V++LD+ Y+A CC+ L + CE S+LCT+ +D CCI  +V                                                                                                                 E YCE   Y     S+IF+ F+ST    +MA TI C+CWLD+DPE+QA++MV++ SP+ +          +P F+P
Sbjct:  114 SVIYGDTCASGEVADANDSILHSALIAGVVIWMLQPVAAWAIHKQVGQRGAHCTLLSSCVCAVTCACAFLVILLDMEYVADCCAQLQNECERSDLCTELIDTCCIGASVXXXXXXXXXXXXXXXXXXXXXVVSSSQYLMIEFILKSVVSALHDEYYNRRMYESDENHDSDSRSRCATHCERNRLYRQLMTSCMELVDMCGDEHKHGLIASSLLSLRCLDQQQESYCEDPKYRYAGASMIFVVFISTFAQAMMACTIGCKCWLDADPEKQALMMVVSSSPHFNNGNFNSSTASTPMFTP 411
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8862.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.530e-2528.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8862contigH-canaliculatus_M_contigs8862:62..4096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYN8
PFAMszf-AN1,zf-C2H2_4
Model size1992
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700
Exons6
Evalue6.59e-05
EggNOG OGsKOG3183@1|root,KOG3183@2759|Eukaryota
Descriptionzinc ion binding
Cds size816
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8862.1.1prot_H-canaliculatus_M_contigs8862.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8862 614..3157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854177.319987-UTR-H-canaliculatus_M_contigs8862:61..2171696854177.319987-UTR-H-canaliculatus_M_contigs8862:61..217Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8862 62..217 +
1696854177.3344805-UTR-H-canaliculatus_M_contigs8862:532..6131696854177.3344805-UTR-H-canaliculatus_M_contigs8862:532..613Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8862 533..613 +
1696854177.4074168-UTR-H-canaliculatus_M_contigs8862:3157..40961696854177.4074168-UTR-H-canaliculatus_M_contigs8862:3157..4096Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8862 3158..4096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854177.3447645-CDS-H-canaliculatus_M_contigs8862:613..6701696854177.3447645-CDS-H-canaliculatus_M_contigs8862:613..670Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8862 614..670 +
1696854177.3576212-CDS-H-canaliculatus_M_contigs8862:1173..12501696854177.3576212-CDS-H-canaliculatus_M_contigs8862:1173..1250Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8862 1174..1250 +
1696854177.3691738-CDS-H-canaliculatus_M_contigs8862:1812..19751696854177.3691738-CDS-H-canaliculatus_M_contigs8862:1812..1975Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8862 1813..1975 +
1696854177.382669-CDS-H-canaliculatus_M_contigs8862:2230..25151696854177.382669-CDS-H-canaliculatus_M_contigs8862:2230..2515Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8862 2231..2515 +
1696854177.3962932-CDS-H-canaliculatus_M_contigs8862:2923..31571696854177.3962932-CDS-H-canaliculatus_M_contigs8862:2923..3157Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8862 2924..3157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8862.1.1

>prot_H-canaliculatus_M_contigs8862.1.1 ID=prot_H-canaliculatus_M_contigs8862.1.1|Name=mRNA_H-canaliculatus_M_contigs8862.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=272bp
MLDINYIARCCSLLGDNCEVSNLCTQFVDDCCISNAVEDYCETSSYHIGA
VSIIFLAFVSTSCMVIMASTIACRCWLDSDPERQAMLMVLTGSPYASPRG
GGGGGGGSPRFSPRNTLLSGLLDVGNTTGGATPSTQTKRPPRDPFSAAPA
ERVVEEKTAAESLPFATREQCPQCGAVFGNMGTLLNHVERFHSKGKTMTG
TAPSSRASAASLAAAAESATEYRGGNERDRKGARPRPSLARKGSAYEPDE
GPVLFVRPPGVGVPPGRGPPP*
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mRNA from alignment at H-canaliculatus_M_contigs8862:62..4096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8862.1.1 ID=mRNA_H-canaliculatus_M_contigs8862.1.1|Name=mRNA_H-canaliculatus_M_contigs8862.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4035bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8862:62..4096+ (Hapterophycus canaliculatus Oshoro7m male)
AGGGGTCTGACGGCGCAAGCTAGCCCTCTTTATCAGATCAACTGTCCGAC
AGAGGAGGTAGATAGCGCCAACGCCTCCGTGCTGCGTAGCGCGCTCATCG
TGGGGCTAGTAATCTGGTTCACCCAGCCGTGCTCCGCGCGCTTTATCTGC
AAGCAGGTACATGAAAGACCGACAGATCAGATCTCACGTGTTTCGCCTTA
CATTTATGGATCGGACGGAACGGTGGGGGCGCTACGAGGGAGGAGCTTGA
AAGGGTTGACAGTGAAAAGACGATTCAGACTTGAGTGGCGGCGGCAGCAC
CAAACTACAGCGCCATAACGATCACAGCTGCAGCAGCAGCGACTACAGCA
CCATCAGCAACGATGGAAGCAGGAGTGAATGAAACGAATGACAACAAGAC
GAACCCCCAACCATGGCCGTCCACTTCGTTCGCTCCTATCAAACATATCC
TGTTGGCATTGTTGGCATCAGGTGGACCGAGGGAGTGCGATAGCCACGCT
ACTGACCTCGGTAGTGAGCTGCGTGACATGCCTCGGATCGTTCGTGGTGG
TCATGCTCGACATCAACTACATCGCCCGCTGCTGCTCGCTGCTAGGGGAC
AACTGCGAGGTAAAACCAGCAGGATGCAACTGGCGCAAGAAATGTCCTCT
ACGCAGCTAAGGGAGCTGGTTGGGTCAACAAATGACGACCGGTTAGGCGA
GCGATTCCGGATAGACACATTACACTCGCAGAGTATTGTATGACCAAAGC
ATGGTCCATATCCGGAGCGACATTTTGCACGCCGAAAATGGGAGTCACGA
AGCGGAGAGGCGTATGTTTGTGTAGACAGGACGGGCGTCGATGCTTGCAT
GAAGAGAAAACGTGTGGGAGCAAGTAGTATTTCTTGTGTTCGGCAGATTT
GGTTTTGTTCATCCCATCTATATTTTCTGGCCGCTAGCCTACCTTCTTTC
TCCTCTTCGGCGCACATACACCTTTCGGTATAGGTGCGCGTGCACATTGC
GGTGTATAGTTTCTGTACCACTGACAACACGTACCTCGATTTGCCTCAGA
GCCAACAGAGCCAGAATCCGCGCTTGGATGGTCCTACTTCTGCCATGCAT
TTTGTCTTGCAGGTGTCCAATCTATGCACACAGTTCGTGGACGATTGCTG
TATTAGCAATGCCGTGGAGGACTATTGTGAAACTTCCAGGTGCGAATGCG
TTGAATCTATGCTGGCAAGATTAGCCGGACGAAACACTTTAGTGCTGTGC
GTCGCTTCGTATGGTCACCCTTGTCGGAGGTTTCCGGCGACGACCGCCGC
TTCATAAGCGCTGTCGAATGAGTATGTCGCAGGATAGGGTGCGCTATTTG
AACAAAGCTAGCTCTCCACATCGTGCTGTGCTCGATCTTACGAGGGACTC
GTATGCGTGTGCTTCGATCGTGTAGCGGCCTTTACCGGCGTCTGGAGAAC
ACAACACGTCTCCCGTGTATCTTGCCTTGTCTATCGCTTCCTGGATAACG
GCCTAGCCTTGGGAGTCGCTCCCGGTTGGTCAAAGACGACCCCACCTTCA
CCACGCGCTACAGAAATTCCGAGACAAACCAGGCCGTGTGGCGAGAACGT
CAACGATGGTCGAATTGGTTGCCGTTTCCAAAAACTACGCGGAATCTTGG
ATTATGATACGCCACGCCCCGCTTTTTCGTCATCGACCTTGTGCGACATC
CTCTTCTCTGCCTTCGATGCAAACTCGGGACAAAAACTGGGTTACCTCTA
GCTACCATATAGGAGCCGTGTCGATCATCTTCCTGGCGTTCGTGTCGACA
TCGTGCATGGTCATCATGGCCAGCACCATAGCGTGTCGCTGCTGGCTTGA
CTCGGACCCGGAGAGGCAGGCCATGCTTATGGTACTCACGGGCTCCCCGT
ACGCTTCACCAAGGGTAAGGGTAAGATGTGGGTTGTTGAGATCCATTCCT
GCGTGGCTTCTTTTCTAAAACGGGCTTAGGATTCTGCGGCCCCTCTTGCT
CCTCACAGAAGAACGCTAGATCAAGCAAGCGAACACTTGCCACACGGAAG
GGGTGAGGGTGGGTCACAGATTCTTTCTCGTAGGACTGTTACAATATCAG
CGAGAGCGACGATACGGGAGCAGAAAAAAACGCGCTTGCTCCCGTTACGA
CATCGACCTCCACCACCAGGGCGGCGGTGGCGGCGGCGGTGGCTCTCCCA
GATTTTCTCCGAGAAATACCTTGCTGTCGGGCCTGTTGGATGTGGGAAAT
ACCACCGGCGGAGCCACCCCAAGTACCCAGACGAAGCGACCTCCTCGCGA
TCCGTTTTCAGCAGCACCCGCTGAGAGGGTGGTGGAGGAAAAGACCGCTG
CAGAATCTCTGCCCTTCGCAACAAGGGAGCAGTGTCCTCAGTGTGGGGCC
GTGTTTGGAAACATGGGCACCCTGCTCAACCATGTCGAGCGCTTCCACTC
CAAGGTAAATGGCATACAAATATCAGTGACTTGTATTGTTATGCGGTGTA
CAAATCATGCCATCCTAATCGATATGGGTGGAAGATGTTGCGACGCACGC
GTTGCCGATGGCATTAGCTACATCCTAATCTGACCGAGAATCACGGAGGT
TTGACAAAAGTACACAACCTATATGGTGCGGAGGACGAGGCTAGAGAGAG
GTTCGCTATCACGAGGCGATCGTCGGAAACACGTTTGCTTCCCCCCCAAA
ACTGTATTTGGCCGTCGAGAGGTCGAGAGGGCAGTGACATTTGCGACTCC
ACACGGAAACGGAGCGATATAACTTCTGTAGAGGGATGCGCTGTCGGCAA
GGTAAGCGATGAACGAGACACGCTCCCGCGCCCCATCCATCGGATCATCT
TTGTGCCCCCAGGGCAAGACAATGACGGGAACAGCGCCTTCATCGAGGGC
GTCGGCCGCGTCTTTAGCAGCAGCAGCAGAGTCAGCAACAGAGTATCGCG
GAGGAAACGAACGCGACCGCAAAGGCGCCAGACCAAGGCCATCCCTAGCA
CGTAAAGGTAGCGCTTATGAGCCAGACGAGGGTCCGGTGCTTTTTGTGCG
CCCTCCCGGGGTCGGTGTTCCACCGGGCAGAGGGCCGCCGCCTTAGTCGC
CTCGCTCGGCTTCGCCATTGCTTGGTGGACTAACTTGATAACTTCCCCGA
GCTCTTGGTGTTTTAACTACCCGATCGTTGTTAGTGTTCTTGGCACCGTT
CATTCTTTTGAAGGCGTTGCCTGAGATGGAGTCAGTCGATTTAGAAGCTT
GACAACGTCGTTTTGCGATACTGGTACTTGTAGAAACACCCCTTGTGCGA
TTCTATTCCCGCTTTCGACCTGCTTGGCCAATCACCTCGCCGCGAGCATC
CGTGGTTGCTTGTTTCTAGAGACATTGATGGATCTATCTGACATGTTTCC
ACATCGCCCCTGCGCAACCTGACGCGAACCGGCCTGTGTTAAACCCGGAC
GGAAACGAGGTGTGCTACTGTAGTCCTCAGCCATCAAGCCGTGCGCACTG
ACGTCATCGTGCGATAGCGATGTGTCCTACGCTTCCGTATCACTGAAGCT
CGTATCGTTTCCTGTAGAACACGTCGTTCTGGGCGCCACTGGAATTGCCA
AAGGGCGAAGAAACTGGAGTCTCCTGTACCAGGCAGATAAAACAAATTCG
TCCTACTTTGGTATAGGTTTTCTATCCGCTGTAGATAACGGCACACCGCA
AGGCCAGCCTCGGGCAACTCGTATCCACTTACTGTGGTAAGCGGAGAAAT
CCGTTGAATCACCCGAAGCTTGAAACTAAAGGGATCTTGGTGGGAGATGC
TCGAAGACGAGGCGGGGATTCGTCTTTCGAACCCGTACACAATTTCCTGC
TTGGAGGGAAGTACCCCATTGCAAACCGAGTTCCAGTCCCTGCTCCGTTT
CCGTACTCATGACGAATTTGGCCTCGGGCAAAAGCGTGTGCCGCCTGAAT
TATTCACTTTTTTTCCCTCCTGGTCGAGTGAAACGGTCTGCTCCCGGTTC
TCTGTGACAACATTTGCATGGGAGGTAGTCTAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8862:62..4096+

>mRNA_H-canaliculatus_M_contigs8862.1.1 ID=mRNA_H-canaliculatus_M_contigs8862.1.1|Name=mRNA_H-canaliculatus_M_contigs8862.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8862:62..4096+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCTCGACATCAACTACATCGCCCGCTGCTGCTCGCTGCTAGGGGACAA
CTGCGAGGTGTCCAATCTATGCACACAGTTCGTGGACGATTGCTGTATTA
GCAATGCCGTGGAGGACTATTGTGAAACTTCCAGCTACCATATAGGAGCC
GTGTCGATCATCTTCCTGGCGTTCGTGTCGACATCGTGCATGGTCATCAT
GGCCAGCACCATAGCGTGTCGCTGCTGGCTTGACTCGGACCCGGAGAGGC
AGGCCATGCTTATGGTACTCACGGGCTCCCCGTACGCTTCACCAAGGGGC
GGCGGTGGCGGCGGCGGTGGCTCTCCCAGATTTTCTCCGAGAAATACCTT
GCTGTCGGGCCTGTTGGATGTGGGAAATACCACCGGCGGAGCCACCCCAA
GTACCCAGACGAAGCGACCTCCTCGCGATCCGTTTTCAGCAGCACCCGCT
GAGAGGGTGGTGGAGGAAAAGACCGCTGCAGAATCTCTGCCCTTCGCAAC
AAGGGAGCAGTGTCCTCAGTGTGGGGCCGTGTTTGGAAACATGGGCACCC
TGCTCAACCATGTCGAGCGCTTCCACTCCAAGGGCAAGACAATGACGGGA
ACAGCGCCTTCATCGAGGGCGTCGGCCGCGTCTTTAGCAGCAGCAGCAGA
GTCAGCAACAGAGTATCGCGGAGGAAACGAACGCGACCGCAAAGGCGCCA
GACCAAGGCCATCCCTAGCACGTAAAGGTAGCGCTTATGAGCCAGACGAG
GGTCCGGTGCTTTTTGTGCGCCCTCCCGGGGTCGGTGTTCCACCGGGCAG
AGGGCCGCCGCCTTAG
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