mRNA_H-canaliculatus_M_contigs8001.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8001.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8001.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Iron-sulfur (cluster assembly protein, similar to nifU n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR5_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 1.790e-71
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1
Query:    4 RGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWASGSKDAQ 402
            RGLHDFLYSNEEDHGATASDGSVELFDGT+LYEV +WLKDNAESKHAAVYAVVGKD+ VNFVGVGRNVALS+AAHLA EGE MV++LK    FKFPKR+KM+ALK QWIEECGS PVGN+KGSEWA+GSKDAQ
Sbjct:   85 RGLHDFLYSNEEDHGATASDGSVELFDGTQLYEVSKWLKDNAESKHAAVYAVVGKDEKVNFVGVGRNVALSLAAHLAAEGESMVHMLKVR-SFKFPKRDKMEALKAQWIEECGSTPVGNIKGSEWATGSKDAQ 216          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: NifU-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.180e-32
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    7 GLHDFLYSNEEDHGATASDGSV--ELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWASGSKDA 399
            GLHDFLY ++EDHGAT+   +   E F G + Y V +WLK    SK AAVY+V+G +  + FVG+ RNVA+S+  HL NEG + V L +    F++PKR +M+AL+EQW+     +P GN  G+EWA   KDA
Sbjct:   82 GLHDFLYGDQEDHGATSKGAAAGGEEFIGNRSYSVTEWLKQYGNSKIAAVYSVIGANGKLAFVGMSRNVAISLQCHLQNEGPNKVALARIQ-SFRYPKRSEMEALREQWLAAAEDVPEGNTPGNEWAQTIKDA 213          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=UPI0019BB2B4F)

HSP 1 Score: 103 bits (258), Expect = 5.250e-25
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 RGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WA 381
            +GLH FLYS++++H  TA+        G ++  V +W      +K A VYAV+ +D+ + +VG  RNV LS++ HLA  GED    L+    FKFPKRE+M+ L++ WI E  SIP+GN + S+ WA
Sbjct:   19 QGLHSFLYSSDDEHTETATSAPNLESQGDEIMSVAEWSAQAVNAKVAGVYAVLDRDRHLQYVGYSRNVPLSLSGHLAQVGEDACAFLRLK-TFKFPKREEMEQLRDAWIAENNSIPLGNGEESDRWA 144          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019E2436A)

HSP 1 Score: 103 bits (257), Expect = 7.070e-25
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 RGLHDFLYSNEEDHGATASDGSVEL-FDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WA 381
            +GLH FLYS++++H   ++D S E  FDGT L++V +WLK   E K A VYAVV  D+   ++G  R+V  S+  H+A  G      L+    FKFPKR+ M+AL+++WI E   IP+GN    E WA
Sbjct:   23 QGLHSFLYSSDDEH---STDSSFETNFDGTNLFKVSEWLKQT-EVKIAGVYAVVDSDRRYQYIGYSRDVLRSLKGHIAQNGSQACTFLRVK-SFKFPKRQAMEALRDEWIAELDYIPLGNTDRQETWA 145          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T1G6R5_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 2.170e-24
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    7 GLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
            GLH+FLYS+EE+HGA A+  ++E  DGT++  +  W      +K A VYAV+       ++G  RN+ LS+  H+A  G +    L+    FKFPKRE+M++L++ WI E G IP GN   SE WAS
Sbjct:   20 GLHNFLYSSEEEHGAVAAIPALEN-DGTQIMPIAVWRDLATNAKVAGVYAVIDTSHQTQYIGYSRNILLSLNGHIAQNGSENCAFLRVQ-TFKFPKREEMESLRDFWIAEIGIIPPGNGTDSEMWAS 144          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Tychonema TaxID=54312 RepID=A0A2G4F0C0_9CYAN)

HSP 1 Score: 101 bits (252), Expect = 4.730e-24
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 GLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
            GLH+FLYS++E+HGA  +  ++E  DGT++  +  W      +K A VYAV+       ++G  RN+ LS+  H+A  G +    L+    FKFPKRE+M+ L++ WI E G+IP GN   SE WAS
Sbjct:   25 GLHNFLYSSDEEHGAATAIPALEN-DGTQIISIATWRDLATNAKVAGVYAVINTSHQTQYIGYSRNILLSLNGHIAQNGSENCAFLRVQ-TFKFPKREEMENLRDTWIAELGNIPPGNDADSEMWAS 149          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=1 Tax=Microcoleus sp. SU_5_3 TaxID=2720482 RepID=A0A7X6CBT7_9CYAN)

HSP 1 Score: 99.8 bits (247), Expect = 2.400e-23
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 GLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
            GLH+FLYS++++H A A+  ++E  DGT++  +  W      +K A VYAV+       +VG  RN+ LS+ +H+A  G      ++    FKFPKRE+M+ L++ WI E GSIP GN   SE WAS
Sbjct:   20 GLHNFLYSSDQEHSAVAAIAALEN-DGTQIMPIAAWRDLATNAKVAGVYAVIDTFHQTQYVGYSRNILLSINSHIAQNGSKSCAFMRVQ-TFKFPKREEMENLRDAWIAEIGSIPPGNGADSEMWAS 144          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=1 Tax=Cylindrospermum sp. FACHB-282 TaxID=2692794 RepID=UPI001685537A)

HSP 1 Score: 98.2 bits (243), Expect = 9.060e-23
Identity = 50/128 (39.06%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    4 RGLHDFLYSNEEDHGATASDGSVELFD-GTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWAS 384
            +GLHDFLYS++++HGAT +  + EL + G ++  +  W      +K A VYAV+  ++   ++G  RNV LS+  H+   GE     ++    FKFPKR++M+ L++ WI E  S P GNV  + WAS
Sbjct:   19 QGLHDFLYSSDDEHGATEASITPELANNGMEIIPLEAWRGIGGNAKIAGVYAVLDNNRRTQYIGYSRNVLLSLNGHVTQNGEQKCAFVRVQ-TFKFPKRQEMEDLRDAWIAELESTPPGNVADNMWAS 145          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (domain-containing protein n=17 Tax=Nostoc TaxID=1177 RepID=A0A2R5FIN1_NOSCO)

HSP 1 Score: 98.2 bits (243), Expect = 9.470e-23
Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    4 RGLHDFLYSNEEDHGATASDGSVELF-DGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
            RGLH+FLYS++++H AT    + EL  DGT++  +  W      +K A VYAV+  ++T  ++G  RNV LS+ +H++  G+     L+    FKFPKR++M+ L++ WI E  S P GN    E WAS
Sbjct:   19 RGLHEFLYSSDDEHTATEVSITPELANDGTEIVNLEAWSASAQNAKIAGVYAVLDAERTTQYIGYSRNVLLSLNSHVSQNGQQKCAFLRVQ-AFKFPKRQEMEDLRDAWIAELESTPPGNATDGEMWAS 146          
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CR44_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.170e-22
Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    4 RGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWAS 384
            +GLH FLYS+E +H A  +   ++ FD T++ E+  W +    SK A VYAV+  D+   ++G  R+V  S+  H+   G  + + ++    FKFPKR+ M+AL+++W+ E   +P GN   + WAS
Sbjct:   19 QGLHSFLYSSEGEHSAEDASAIID-FDETEMVEISVWEQQIENSKVAGVYAVLDSDRLYQYIGYSRDVRRSLKGHITQNGTQVCSYIRVK-TFKFPKRQSMEALRDEWLAELNYLPAGNTGDNTWAS 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Iron-sulfur1.790e-7184.96cluster assembly protein, similar to nifU n=1 Tax=... [more]
NifU-like2.180e-3248.12domain-containing protein n=1 Tax=Tribonema minus ... [more]
GIY-YIG5.250e-2542.52nuclease family protein n=2 Tax=Leptolyngbyaceae T... [more]
GIY-YIG7.070e-2543.75nuclease family protein n=1 Tax=Pleurocapsales cya... [more]
Uncharacterized2.170e-2443.31protein n=2 Tax=unclassified Cyanobacteria TaxID=1... [more]
Uncharacterized4.730e-2441.73protein n=2 Tax=Tychonema TaxID=54312 RepID=A0A2G4... [more]
GIY-YIG2.400e-2341.73nuclease family protein n=1 Tax=Microcoleus sp. SU... [more]
GIY-YIG9.060e-2339.06nuclease family protein n=1 Tax=Cylindrospermum sp... [more]
GIY-YIG9.470e-2340.31domain-containing protein n=17 Tax=Nostoc TaxID=11... [more]
Uncharacterized1.170e-2236.22protein n=2 Tax=Pleurocapsa sp. CCALA 161 TaxID=21... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8001contigH-canaliculatus_M_contigs8001:3713..4984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKR5
PFAMsNifU
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K22074
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons3
Evalue2.93e-72
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
DescriptionNFU1 iron-sulfur cluster scaffold
Cds size408
COG categoryO
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.0630984-CDS-H-canaliculatus_M_contigs8001:3712..38141696854130.0630984-CDS-H-canaliculatus_M_contigs8001:3712..3814Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8001 3713..3814 +
1696854130.0748794-CDS-H-canaliculatus_M_contigs8001:4342..45181696854130.0748794-CDS-H-canaliculatus_M_contigs8001:4342..4518Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8001 4343..4518 +
1696854130.0881107-CDS-H-canaliculatus_M_contigs8001:4854..49841696854130.0881107-CDS-H-canaliculatus_M_contigs8001:4854..4984Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8001 4855..4984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8001.1.1prot_H-canaliculatus_M_contigs8001.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8001 3713..4984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8001.1.1

>prot_H-canaliculatus_M_contigs8001.1.1 ID=prot_H-canaliculatus_M_contigs8001.1.1|Name=mRNA_H-canaliculatus_M_contigs8001.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=136bp
NRGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAV
YAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKRE
KMDALKEQWIEECGSIPVGNVKGSEWASGSKDAQVR
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mRNA from alignment at H-canaliculatus_M_contigs8001:3713..4984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8001.1.1 ID=mRNA_H-canaliculatus_M_contigs8001.1.1|Name=mRNA_H-canaliculatus_M_contigs8001.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8001:3713..4984+ (Hapterophycus canaliculatus Oshoro7m male)
AACAGAGGACTGCATGACTTCTTGTACAGCAACGAGGAAGATCACGGAGC GACCGCTAGCGACGGTTCGGTAGAACTTTTCGATGGCACCAAGCTTTATG AGGTACGGTGGATGGTTGGTTCAAGCTTACGTTTTCGGCGACCTCAAAAA CTTCTCGACCTTTGCTTTTTTTTTTTGTGATGCGGTTTCCTCCACGTGTG CAGTGCAGCATAGTCTCAGGCATAATTTGCGCACCAGGACCGTTTTTTCT CAGTACAATTCGGGCACAAGCAGCTCGGAGTGATCAGGCACTTCATTCAG ACACGGCTGCATCCCAATCCCGGCCACACCGCAAACGTGTCTTGGCCTCG TAAAAGTGTTGATGCGCTATCCTGTTTTCGAGATAAGCACATGTCACCGT TAAAATTCGAGGTTACGTTATCGTCGACGTTCATCAATGCACCGCGAAAT GAAACGCTGCAAGCCCACAGGTACAGTTACCCAGTAAGCTGTTGTCGGGT GAGTATGTCGAGCGCTTCAGTGGGAAGACTCGTGAAATGCGCCGAATGTT CGGTGACCTTGTGCCCGCGTTGCACGTCGATCTGCTTACGATTTATCCTG ATTTACCTTAAAAAAAACTTCCACGTACAGGTAGGGCAGTGGCTGAAAGA CAACGCGGAATCCAAGCATGCCGCAGTGTATGCCGTGGTGGGGAAAGACA AGACCGTCAACTTCGTTGGCGTCGGCCGTAACGTCGCATTATCGGTGGCC GCCCACCTCGCAAACGAGGGCGAAGACATGGTGAACTTGCTCAAGGCAAG TTTCCGGTATGCCGGCCAAAATTACCACGGGACTGCATGTGCTTGTCTAT GTGTCATGTCATAATCCACTTTTGTGCGCAGCACAAGCCTCTTCCGACAT TACCTCAGAAGGTCGTAAATAGTCGAGTGAGGGCGGCCTTATAGGTGTAA AGCTGTCAGTCATGCTCACAGCAAGTGGCTCATCGTGAAGTGCTCCACAC CTCTTCCCGAAGGCCCGTCTTCCACGTATTGCCGCCGGTATTGTTGGGCT GCACCTTCTGCTGCACGTTCGAACTTGCTTTGGGGATAAATTATGTCCCT CACATCGCCAAAAATATATGTTGTAACTCATCAGGTGAGAAGTTTCAAGT TTCCGAAGCGCGAGAAAATGGATGCGCTCAAAGAACAGTGGATCGAGGAA TGCGGTTCAATACCCGTTGGCAACGTCAAGGGCAGCGAATGGGCAAGCGG TTCGAAGGACGCACAGGTGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8001:3713..4984+

>mRNA_H-canaliculatus_M_contigs8001.1.1 ID=mRNA_H-canaliculatus_M_contigs8001.1.1|Name=mRNA_H-canaliculatus_M_contigs8001.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8001:3713..4984+ (Hapterophycus canaliculatus Oshoro7m male)
AACAGAGGACTGCATGACTTCTTGTACAGCAACGAGGAAGATCACGGAGC
GACCGCTAGCGACGGTTCGGTAGAACTTTTCGATGGCACCAAGCTTTATG
AGGTAGGGCAGTGGCTGAAAGACAACGCGGAATCCAAGCATGCCGCAGTG
TATGCCGTGGTGGGGAAAGACAAGACCGTCAACTTCGTTGGCGTCGGCCG
TAACGTCGCATTATCGGTGGCCGCCCACCTCGCAAACGAGGGCGAAGACA
TGGTGAACTTGCTCAAGGCAAGTTTCCGTTTCAAGTTTCCGAAGCGCGAG
AAAATGGATGCGCTCAAAGAACAGTGGATCGAGGAATGCGGTTCAATACC
CGTTGGCAACGTCAAGGGCAGCGAATGGGCAAGCGGTTCGAAGGACGCAC
AGGTGAGA
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