mRNA_H-canaliculatus_M_contigs8001.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Iron-sulfur (cluster assembly protein, similar to nifU n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR5_ECTSI) HSP 1 Score: 231 bits (588), Expect = 1.790e-71 Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1
Query: 4 RGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWASGSKDAQ 402
RGLHDFLYSNEEDHGATASDGSVELFDGT+LYEV +WLKDNAESKHAAVYAVVGKD+ VNFVGVGRNVALS+AAHLA EGE MV++LK FKFPKR+KM+ALK QWIEECGS PVGN+KGSEWA+GSKDAQ
Sbjct: 85 RGLHDFLYSNEEDHGATASDGSVELFDGTQLYEVSKWLKDNAESKHAAVYAVVGKDEKVNFVGVGRNVALSLAAHLAAEGESMVHMLKVR-SFKFPKRDKMEALKAQWIEECGSTPVGNIKGSEWATGSKDAQ 216
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: NifU-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ7_9STRA) HSP 1 Score: 128 bits (321), Expect = 2.180e-32 Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 7 GLHDFLYSNEEDHGATASDGSV--ELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWASGSKDA 399
GLHDFLY ++EDHGAT+ + E F G + Y V +WLK SK AAVY+V+G + + FVG+ RNVA+S+ HL NEG + V L + F++PKR +M+AL+EQW+ +P GN G+EWA KDA
Sbjct: 82 GLHDFLYGDQEDHGATSKGAAAGGEEFIGNRSYSVTEWLKQYGNSKIAAVYSVIGANGKLAFVGMSRNVAISLQCHLQNEGPNKVALARIQ-SFRYPKRSEMEALREQWLAAAEDVPEGNTPGNEWAQTIKDA 213
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=UPI0019BB2B4F) HSP 1 Score: 103 bits (258), Expect = 5.250e-25 Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 4 RGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WA 381
+GLH FLYS++++H TA+ G ++ V +W +K A VYAV+ +D+ + +VG RNV LS++ HLA GED L+ FKFPKRE+M+ L++ WI E SIP+GN + S+ WA
Sbjct: 19 QGLHSFLYSSDDEHTETATSAPNLESQGDEIMSVAEWSAQAVNAKVAGVYAVLDRDRHLQYVGYSRNVPLSLSGHLAQVGEDACAFLRLK-TFKFPKREEMEQLRDAWIAENNSIPLGNGEESDRWA 144
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019E2436A) HSP 1 Score: 103 bits (257), Expect = 7.070e-25 Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 4 RGLHDFLYSNEEDHGATASDGSVEL-FDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WA 381
+GLH FLYS++++H ++D S E FDGT L++V +WLK E K A VYAVV D+ ++G R+V S+ H+A G L+ FKFPKR+ M+AL+++WI E IP+GN E WA
Sbjct: 23 QGLHSFLYSSDDEH---STDSSFETNFDGTNLFKVSEWLKQT-EVKIAGVYAVVDSDRRYQYIGYSRDVLRSLKGHIAQNGSQACTFLRVK-SFKFPKRQAMEALRDEWIAELDYIPLGNTDRQETWA 145
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T1G6R5_9CYAN) HSP 1 Score: 102 bits (254), Expect = 2.170e-24 Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 7 GLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
GLH+FLYS+EE+HGA A+ ++E DGT++ + W +K A VYAV+ ++G RN+ LS+ H+A G + L+ FKFPKRE+M++L++ WI E G IP GN SE WAS
Sbjct: 20 GLHNFLYSSEEEHGAVAAIPALEN-DGTQIMPIAVWRDLATNAKVAGVYAVIDTSHQTQYIGYSRNILLSLNGHIAQNGSENCAFLRVQ-TFKFPKREEMESLRDFWIAEIGIIPPGNGTDSEMWAS 144
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Tychonema TaxID=54312 RepID=A0A2G4F0C0_9CYAN) HSP 1 Score: 101 bits (252), Expect = 4.730e-24 Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 7 GLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
GLH+FLYS++E+HGA + ++E DGT++ + W +K A VYAV+ ++G RN+ LS+ H+A G + L+ FKFPKRE+M+ L++ WI E G+IP GN SE WAS
Sbjct: 25 GLHNFLYSSDEEHGAATAIPALEN-DGTQIISIATWRDLATNAKVAGVYAVINTSHQTQYIGYSRNILLSLNGHIAQNGSENCAFLRVQ-TFKFPKREEMENLRDTWIAELGNIPPGNDADSEMWAS 149
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=1 Tax=Microcoleus sp. SU_5_3 TaxID=2720482 RepID=A0A7X6CBT7_9CYAN) HSP 1 Score: 99.8 bits (247), Expect = 2.400e-23 Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 7 GLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
GLH+FLYS++++H A A+ ++E DGT++ + W +K A VYAV+ +VG RN+ LS+ +H+A G ++ FKFPKRE+M+ L++ WI E GSIP GN SE WAS
Sbjct: 20 GLHNFLYSSDQEHSAVAAIAALEN-DGTQIMPIAAWRDLATNAKVAGVYAVIDTFHQTQYVGYSRNILLSINSHIAQNGSKSCAFMRVQ-TFKFPKREEMENLRDAWIAEIGSIPPGNGADSEMWAS 144
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (nuclease family protein n=1 Tax=Cylindrospermum sp. FACHB-282 TaxID=2692794 RepID=UPI001685537A) HSP 1 Score: 98.2 bits (243), Expect = 9.060e-23 Identity = 50/128 (39.06%), Postives = 77/128 (60.16%), Query Frame = 1
Query: 4 RGLHDFLYSNEEDHGATASDGSVELFD-GTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWAS 384
+GLHDFLYS++++HGAT + + EL + G ++ + W +K A VYAV+ ++ ++G RNV LS+ H+ GE ++ FKFPKR++M+ L++ WI E S P GNV + WAS
Sbjct: 19 QGLHDFLYSSDDEHGATEASITPELANNGMEIIPLEAWRGIGGNAKIAGVYAVLDNNRRTQYIGYSRNVLLSLNGHVTQNGEQKCAFVRVQ-TFKFPKRQEMEDLRDAWIAELESTPPGNVADNMWAS 145
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: GIY-YIG (domain-containing protein n=17 Tax=Nostoc TaxID=1177 RepID=A0A2R5FIN1_NOSCO) HSP 1 Score: 98.2 bits (243), Expect = 9.470e-23 Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 4 RGLHDFLYSNEEDHGATASDGSVELF-DGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSE-WAS 384
RGLH+FLYS++++H AT + EL DGT++ + W +K A VYAV+ ++T ++G RNV LS+ +H++ G+ L+ FKFPKR++M+ L++ WI E S P GN E WAS
Sbjct: 19 RGLHEFLYSSDDEHTATEVSITPELANDGTEIVNLEAWSASAQNAKIAGVYAVLDAERTTQYIGYSRNVLLSLNSHVSQNGQQKCAFLRVQ-AFKFPKRQEMEDLRDAWIAELESTPPGNATDGEMWAS 146
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CR44_9CYAN) HSP 1 Score: 97.8 bits (242), Expect = 1.170e-22 Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 4 RGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVYAVVGKDKTVNFVGVGRNVALSVAAHLANEGEDMVNLLKASFRFKFPKREKMDALKEQWIEECGSIPVGNVKGSEWAS 384
+GLH FLYS+E +H A + ++ FD T++ E+ W + SK A VYAV+ D+ ++G R+V S+ H+ G + + ++ FKFPKR+ M+AL+++W+ E +P GN + WAS
Sbjct: 19 QGLHSFLYSSEGEHSAEDASAIID-FDETEMVEISVWEQQIENSKVAGVYAVLDSDRLYQYIGYSRDVRRSLKGHITQNGTQVCSYIRVK-TFKFPKRQSMEALRDEWLAELNYLPAGNTGDNTWAS 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8001.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8001.1.1 >prot_H-canaliculatus_M_contigs8001.1.1 ID=prot_H-canaliculatus_M_contigs8001.1.1|Name=mRNA_H-canaliculatus_M_contigs8001.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=136bp NRGLHDFLYSNEEDHGATASDGSVELFDGTKLYEVGQWLKDNAESKHAAVback to top mRNA from alignment at H-canaliculatus_M_contigs8001:3713..4984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8001.1.1 ID=mRNA_H-canaliculatus_M_contigs8001.1.1|Name=mRNA_H-canaliculatus_M_contigs8001.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8001:3713..4984+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8001:3713..4984+ >mRNA_H-canaliculatus_M_contigs8001.1.1 ID=mRNA_H-canaliculatus_M_contigs8001.1.1|Name=mRNA_H-canaliculatus_M_contigs8001.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8001:3713..4984+ (Hapterophycus canaliculatus Oshoro7m male)back to top |